Wall clock time and date at job start Tue Mar 31 2020 16:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46774 * 2 1 4 4 C 1.38256 * 120.00325 * 89.99999 * 3 2 1 5 5 C 1.38211 * 120.00062 * 180.25725 * 4 3 2 6 6 C 1.38258 * 119.99779 * 359.50247 * 5 4 3 7 7 C 1.38211 * 120.00163 * 0.44980 * 6 5 4 8 8 C 1.50697 * 120.00242 * 179.82927 * 7 6 5 9 9 C 1.50701 * 109.47602 * 269.97916 * 8 7 6 10 10 O 1.21281 * 119.99224 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63418 * 359.72649 * 11 9 8 13 13 C 1.52763 * 109.00795 * 233.58199 * 12 11 9 14 14 C 1.53040 * 109.38095 * 305.58315 * 13 12 11 15 15 H 1.08997 * 109.45962 * 301.22354 * 14 13 12 16 16 N 1.46505 * 109.45760 * 181.25900 * 14 13 12 17 17 C 1.36940 * 119.99394 * 84.93543 * 16 14 13 18 18 H 1.07989 * 120.00245 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99495 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00585 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46820 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47077 * 120.00015 * 21 19 17 24 24 H 1.48497 * 109.46818 * 239.99832 * 21 19 17 25 25 C 1.53047 * 109.53685 * 61.24217 * 14 13 12 26 26 H 1.08997 * 109.49560 * 58.58751 * 25 14 13 27 27 C 1.52992 * 109.49694 * 178.68164 * 25 14 13 28 28 C 1.46931 * 120.62800 * 180.02562 * 11 9 8 29 29 C 1.38215 * 119.99534 * 269.97013 * 3 2 1 30 30 H 1.08999 * 109.47352 * 300.00741 * 1 2 3 31 31 H 1.09003 * 109.47116 * 60.00528 * 1 2 3 32 32 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47638 * 239.99521 * 2 1 3 34 34 H 1.08998 * 109.46675 * 119.99316 * 2 1 3 35 35 H 1.08002 * 119.99676 * 359.97122 * 4 3 2 36 36 H 1.07998 * 120.00348 * 179.72205 * 5 4 3 37 37 H 1.08004 * 120.00379 * 180.28376 * 6 5 4 38 38 H 1.09008 * 109.47044 * 29.98298 * 8 7 6 39 39 H 1.08996 * 109.47325 * 149.97679 * 8 7 6 40 40 H 1.09005 * 109.58148 * 353.41263 * 12 11 9 41 41 H 1.08998 * 109.58576 * 113.83826 * 12 11 9 42 42 H 1.08996 * 109.56303 * 185.54974 * 13 12 11 43 43 H 1.09002 * 109.38657 * 65.50944 * 13 12 11 44 44 H 0.96999 * 120.00416 * 264.93274 * 16 14 13 45 45 H 0.96993 * 120.00180 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47181 * 179.83908 * 27 25 14 47 47 H 1.09001 * 109.47120 * 299.83924 * 27 25 14 48 48 H 1.08998 * 109.47500 * 59.83826 * 27 25 14 49 49 H 1.09000 * 109.58392 * 246.15686 * 28 11 9 50 50 H 1.08995 * 109.58593 * 6.58439 * 28 11 9 51 51 H 1.07996 * 120.00479 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0727 1.1973 5 6 2.7183 3.3776 1.1972 6 6 2.9534 4.0276 -0.0001 7 6 2.7240 3.3757 -1.1971 8 6 2.9766 4.0855 -2.5022 9 6 1.7212 4.7957 -2.9391 10 8 0.7202 4.7320 -2.2573 11 7 1.7114 5.5023 -4.0867 12 6 2.9182 5.5944 -4.9195 13 6 3.2318 7.0667 -5.1799 14 6 2.0005 7.7499 -5.7793 15 1 1.7223 7.2487 -6.7064 16 7 2.3089 9.1548 -6.0576 17 6 2.9144 9.5024 -7.2356 18 1 3.1649 8.7409 -7.9592 19 6 3.2062 10.8335 -7.4996 20 7 2.9013 11.7616 -6.6174 21 14 4.0328 11.3077 -9.1062 22 1 4.2692 10.0883 -9.9200 23 1 3.1557 12.2413 -9.8575 24 1 5.3301 11.9707 -8.8185 25 6 0.8374 7.6700 -4.7877 26 1 1.1238 8.1493 -3.8517 27 6 -0.3833 8.3818 -5.3741 28 6 0.4953 6.2005 -4.5254 29 6 2.2632 2.0721 -1.1970 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8900 35 1 2.0823 1.5637 2.1326 36 1 2.8940 3.8883 2.1325 37 1 3.3137 5.0457 -0.0003 38 1 3.7784 4.8122 -2.3713 39 1 3.2656 3.3585 -3.2612 40 1 3.7567 5.1300 -4.4004 41 1 2.7468 5.0867 -5.8687 42 1 4.0663 7.1444 -5.8768 43 1 3.4959 7.5521 -4.2403 44 1 2.0842 9.8387 -5.4075 45 1 3.1048 12.6918 -6.8021 46 1 -1.2123 8.3222 -4.6688 47 1 -0.1393 9.4277 -5.5604 48 1 -0.6681 7.9028 -6.3108 49 1 0.1220 5.7433 -5.4418 50 1 -0.2644 6.1357 -3.7465 51 1 2.0841 1.5627 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036082267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:00 Heat of formation + Delta-G solvation = -19.202375 kcal Electronic energy + Delta-G solvation = -28213.059980 eV Core-core repulsion = 24497.488626 eV Total energy + Delta-G solvation = -3715.571354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38247 -39.34985 -37.60839 -34.62765 -34.60439 -33.06486 -32.33325 -31.47971 -29.71008 -29.35644 -28.14800 -25.99680 -24.84501 -24.12311 -22.85711 -22.18865 -21.66216 -20.81803 -19.72419 -18.77407 -17.15965 -17.00739 -16.65090 -15.98055 -15.78271 -15.09464 -15.02183 -14.92896 -14.15368 -14.01298 -13.88919 -13.75752 -13.59781 -13.35743 -13.22520 -13.15998 -13.00809 -12.49813 -12.30029 -12.19391 -12.01016 -11.90026 -11.75018 -11.58385 -11.44743 -11.19087 -10.98869 -10.96824 -10.92168 -10.82633 -10.64121 -10.41448 -10.18519 -9.79718 -9.70928 -9.63518 -8.93834 -8.87188 -8.69491 -8.45618 -6.98939 -5.80148 -3.08920 1.23203 1.30964 2.71363 3.10191 3.39989 3.45674 3.48034 3.68283 4.46459 4.54278 4.55101 4.66991 4.71424 4.91686 4.98621 5.04992 5.10763 5.12566 5.25046 5.27966 5.29130 5.33603 5.36166 5.40408 5.47453 5.51311 5.59778 5.64835 5.67888 5.68360 5.78726 5.92269 5.96305 5.96733 6.01153 6.07849 6.14050 6.28849 6.36073 6.38119 6.42446 6.45937 6.51128 6.53054 6.63132 6.79676 6.90584 6.91871 7.03771 7.53614 7.66519 8.27645 8.38056 9.49544 10.07130 10.41901 11.42353 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.002238 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.608875 B =12505.637234 C =12771.234558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.058 4.058 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.608 5.608 12 C 0.106 3.894 13 C -0.153 4.153 14 C 0.184 3.816 15 H 0.048 0.952 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.110 4.110 26 H 0.068 0.932 27 C -0.136 4.136 28 C 0.120 3.880 29 C -0.103 4.103 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -21.962 12.267 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.418 6.418 11 N -0.341 5.341 12 C -0.017 4.017 13 C -0.194 4.194 14 C 0.074 3.926 15 H 0.066 0.934 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.130 4.130 26 H 0.087 0.913 27 C -0.194 4.194 28 C -0.002 4.002 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.446 -21.970 12.431 25.285 hybrid contribution 0.589 0.782 -0.760 1.240 sum -0.856 -21.188 11.671 24.205 Atomic orbital electron populations 1.21750 0.94689 1.01499 1.02522 1.20525 0.96270 0.92669 1.02592 1.19818 0.99190 0.96251 0.93108 1.20968 1.00547 0.95078 0.97329 1.21065 0.99616 0.94875 0.97851 1.20986 1.00234 0.99487 0.92000 1.19292 0.98929 0.93939 0.93705 1.20724 0.97272 1.00311 0.96000 1.20432 0.89799 0.79055 0.80338 1.90695 1.35331 1.62250 1.53480 1.48183 1.13309 1.50071 1.22508 1.21794 0.86199 0.99022 0.94673 1.22615 1.01952 0.92857 1.01995 1.20191 0.90397 0.87404 0.94649 0.93436 1.42424 1.71884 1.01197 1.20609 1.19254 1.30914 0.91836 0.94828 0.91180 1.24740 1.02039 0.95901 0.98281 1.69668 1.53079 1.00215 1.35030 0.86153 0.78855 0.78121 0.83261 1.20592 1.21927 1.21941 1.21729 0.97231 0.94056 0.99951 0.91320 1.21656 0.95833 1.02261 0.99635 1.21680 0.86698 0.91814 1.00026 1.20810 0.99425 0.94345 0.97524 0.92567 0.92360 0.92531 0.91161 0.91204 0.86420 0.86151 0.86247 0.87842 0.88094 0.90478 0.91465 0.90515 0.92212 0.78221 0.93565 0.93845 0.90768 0.93067 0.91714 0.89465 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.85 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.14 16 8 C -0.10 -1.10 4.18 -29.04 -0.12 -1.22 16 9 C 0.52 7.30 7.69 -10.99 -0.08 7.22 16 10 O -0.54 -9.56 15.45 5.56 0.09 -9.48 16 11 N -0.61 -8.35 2.98 -173.06 -0.52 -8.86 16 12 C 0.11 1.31 6.31 -3.93 -0.02 1.28 16 13 C -0.15 -2.45 5.64 -26.83 -0.15 -2.60 16 14 C 0.18 3.41 2.20 -67.88 -0.15 3.26 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 N -0.72 -17.07 4.41 -53.38 -0.24 -17.31 16 17 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 21 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C -0.11 -1.80 2.46 -90.52 -0.22 -2.02 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 C -0.14 -2.22 9.02 37.15 0.34 -1.89 16 28 C 0.12 1.76 5.72 -3.73 -0.02 1.74 16 29 C -0.10 -1.14 9.36 -39.58 -0.37 -1.51 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.10 0.96 7.62 -51.92 -0.40 0.57 16 39 H 0.10 0.85 7.90 -51.93 -0.41 0.44 16 40 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.38 9.87 7.50 -40.82 -0.31 9.56 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -31.60 407.05 -10.74 -42.34 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.89 Total: 8.69 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.02 Total: -11.59 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.03 Total: -52.93 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.60 -10.74 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.134 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds