Wall clock time and date at job start Tue Mar 31 2020 16:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46774 * 2 1 4 4 C 1.38256 * 120.00325 * 89.99999 * 3 2 1 5 5 C 1.38211 * 120.00062 * 180.25725 * 4 3 2 6 6 C 1.38258 * 119.99779 * 359.50247 * 5 4 3 7 7 C 1.38211 * 120.00163 * 0.44980 * 6 5 4 8 8 C 1.50697 * 120.00242 * 179.82927 * 7 6 5 9 9 C 1.50701 * 109.47602 * 269.97916 * 8 7 6 10 10 O 1.21281 * 119.99224 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00141 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63418 * 359.72649 * 11 9 8 13 13 C 1.52763 * 109.00795 * 233.58199 * 12 11 9 14 14 C 1.53040 * 109.38095 * 305.58315 * 13 12 11 15 15 H 1.08997 * 109.45962 * 301.22354 * 14 13 12 16 16 N 1.46505 * 109.45760 * 181.25900 * 14 13 12 17 17 C 1.36940 * 119.99394 * 84.93543 * 16 14 13 18 18 H 1.07989 * 120.00245 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99495 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00585 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46820 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47077 * 120.00015 * 21 19 17 24 24 H 1.48497 * 109.46818 * 239.99832 * 21 19 17 25 25 C 1.53047 * 109.53685 * 61.24217 * 14 13 12 26 26 H 1.08997 * 109.49560 * 58.58751 * 25 14 13 27 27 C 1.52992 * 109.49694 * 178.68164 * 25 14 13 28 28 C 1.46931 * 120.62800 * 180.02562 * 11 9 8 29 29 C 1.38215 * 119.99534 * 269.97013 * 3 2 1 30 30 H 1.08999 * 109.47352 * 300.00741 * 1 2 3 31 31 H 1.09003 * 109.47116 * 60.00528 * 1 2 3 32 32 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47638 * 239.99521 * 2 1 3 34 34 H 1.08998 * 109.46675 * 119.99316 * 2 1 3 35 35 H 1.08002 * 119.99676 * 359.97122 * 4 3 2 36 36 H 1.07998 * 120.00348 * 179.72205 * 5 4 3 37 37 H 1.08004 * 120.00379 * 180.28376 * 6 5 4 38 38 H 1.09008 * 109.47044 * 29.98298 * 8 7 6 39 39 H 1.08996 * 109.47325 * 149.97679 * 8 7 6 40 40 H 1.09005 * 109.58148 * 353.41263 * 12 11 9 41 41 H 1.08998 * 109.58576 * 113.83826 * 12 11 9 42 42 H 1.08996 * 109.56303 * 185.54974 * 13 12 11 43 43 H 1.09002 * 109.38657 * 65.50944 * 13 12 11 44 44 H 0.96999 * 120.00416 * 264.93274 * 16 14 13 45 45 H 0.96993 * 120.00180 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47181 * 179.83908 * 27 25 14 47 47 H 1.09001 * 109.47120 * 299.83924 * 27 25 14 48 48 H 1.08998 * 109.47500 * 59.83826 * 27 25 14 49 49 H 1.09000 * 109.58392 * 246.15686 * 28 11 9 50 50 H 1.08995 * 109.58593 * 6.58439 * 28 11 9 51 51 H 1.07996 * 120.00479 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0727 1.1973 5 6 2.7183 3.3776 1.1972 6 6 2.9534 4.0276 -0.0001 7 6 2.7240 3.3757 -1.1971 8 6 2.9766 4.0855 -2.5022 9 6 1.7212 4.7957 -2.9391 10 8 0.7202 4.7320 -2.2573 11 7 1.7114 5.5023 -4.0867 12 6 2.9182 5.5944 -4.9195 13 6 3.2318 7.0667 -5.1799 14 6 2.0005 7.7499 -5.7793 15 1 1.7223 7.2487 -6.7064 16 7 2.3089 9.1548 -6.0576 17 6 2.9144 9.5024 -7.2356 18 1 3.1649 8.7409 -7.9592 19 6 3.2062 10.8335 -7.4996 20 7 2.9013 11.7616 -6.6174 21 14 4.0328 11.3077 -9.1062 22 1 4.2692 10.0883 -9.9200 23 1 3.1557 12.2413 -9.8575 24 1 5.3301 11.9707 -8.8185 25 6 0.8374 7.6700 -4.7877 26 1 1.1238 8.1493 -3.8517 27 6 -0.3833 8.3818 -5.3741 28 6 0.4953 6.2005 -4.5254 29 6 2.2632 2.0721 -1.1970 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8900 35 1 2.0823 1.5637 2.1326 36 1 2.8940 3.8883 2.1325 37 1 3.3137 5.0457 -0.0003 38 1 3.7784 4.8122 -2.3713 39 1 3.2656 3.3585 -3.2612 40 1 3.7567 5.1300 -4.4004 41 1 2.7468 5.0867 -5.8687 42 1 4.0663 7.1444 -5.8768 43 1 3.4959 7.5521 -4.2403 44 1 2.0842 9.8387 -5.4075 45 1 3.1048 12.6918 -6.8021 46 1 -1.2123 8.3222 -4.6688 47 1 -0.1393 9.4277 -5.5604 48 1 -0.6681 7.9028 -6.3108 49 1 0.1220 5.7433 -5.4418 50 1 -0.2644 6.1357 -3.7465 51 1 2.0841 1.5627 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036082267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:59 Heat of formation + Delta-G solvation = -35.267423 kcal Electronic energy + Delta-G solvation = -28213.756613 eV Core-core repulsion = 24497.488626 eV Total energy + Delta-G solvation = -3716.267987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44491 -40.23998 -38.90612 -36.15202 -35.34966 -34.50651 -33.33794 -32.94879 -31.03781 -30.40898 -29.09958 -27.25734 -26.43340 -24.79450 -24.38326 -23.10366 -22.94119 -21.71952 -20.99235 -19.89634 -19.02200 -18.16651 -17.45371 -16.83433 -16.82956 -16.75122 -16.01074 -15.84565 -15.68730 -15.46093 -15.00505 -14.80151 -14.73035 -14.46033 -14.30208 -13.99829 -13.93528 -13.89918 -13.55920 -13.13768 -13.03284 -12.92685 -12.88237 -12.81022 -12.74921 -12.58929 -12.45115 -12.11800 -12.07795 -12.02705 -11.84137 -11.67702 -11.64963 -11.61395 -11.14402 -10.96180 -10.78498 -9.66272 -9.63468 -9.47935 -8.95718 -7.90690 -5.18241 0.43961 0.52891 1.48760 1.49278 1.58754 1.63656 2.04999 2.58312 2.87407 3.42762 3.63172 3.70020 3.79695 3.85026 3.93690 4.01832 4.05702 4.12172 4.24707 4.29463 4.33208 4.37846 4.41357 4.51511 4.52218 4.57950 4.59928 4.68115 4.70967 4.78845 4.79923 4.82734 4.85052 4.98184 5.03005 5.03045 5.08151 5.18720 5.21875 5.24816 5.33268 5.38763 5.40494 5.52373 5.57532 5.59403 5.65912 5.69023 5.74973 6.15877 6.30837 6.45575 7.18780 7.37235 8.13661 8.36534 9.33106 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.002238 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.608875 B =12505.637234 C =12771.234558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.097 4.097 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.608 5.608 12 C 0.114 3.886 13 C -0.144 4.144 14 C 0.178 3.822 15 H 0.048 0.952 16 N -0.733 5.733 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.299 1.299 24 H -0.298 1.298 25 C -0.099 4.099 26 H 0.050 0.950 27 C -0.130 4.130 28 C 0.127 3.873 29 C -0.117 4.117 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.248 0.752 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -24.929 11.985 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.075 4.075 8 C -0.136 4.136 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.185 4.185 14 C 0.070 3.930 15 H 0.067 0.933 16 N -0.372 5.372 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.227 1.227 24 H -0.225 1.225 25 C -0.119 4.119 26 H 0.068 0.932 27 C -0.188 4.188 28 C 0.004 3.996 29 C -0.135 4.135 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.201 0.799 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.727 -25.004 12.134 27.802 hybrid contribution 0.307 1.638 -0.603 1.772 sum -0.420 -23.366 11.531 26.060 Atomic orbital electron populations 1.21736 0.94827 1.02293 1.01455 1.20570 0.96014 0.91460 1.03804 1.20160 0.98595 0.97390 0.92958 1.21281 1.00061 0.95056 0.98269 1.21352 0.99374 0.95353 0.98293 1.21192 1.01123 0.99854 0.92680 1.19483 0.99467 0.94419 0.94113 1.20771 0.95595 1.00912 0.96369 1.21042 0.90397 0.78570 0.79576 1.90679 1.37127 1.63709 1.54528 1.48256 1.13339 1.49727 1.22733 1.21859 0.86717 0.96339 0.95967 1.22409 1.00040 0.95322 1.00736 1.20441 0.92252 0.84894 0.95404 0.93349 1.42623 1.71754 1.03147 1.19643 1.19636 1.28914 0.91874 0.95410 0.90290 1.25506 1.03960 0.96228 1.01457 1.69829 1.55372 1.00096 1.37033 0.85144 0.77228 0.77980 0.79868 1.18714 1.22669 1.22525 1.21590 0.96428 0.95549 0.98371 0.93179 1.21576 0.96504 1.00136 1.00605 1.21525 0.87177 0.90390 1.00486 1.21048 0.99628 0.94454 0.98389 0.93126 0.93910 0.90822 0.90248 0.89713 0.84455 0.84583 0.86151 0.86310 0.85218 0.87022 0.89478 0.91226 0.93656 0.79880 0.94344 0.91969 0.94112 0.92249 0.90047 0.90332 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.09 -1.70 5.13 -19.86 -0.10 -1.80 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 6 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 7 C -0.07 -1.63 4.37 -19.87 -0.09 -1.72 16 8 C -0.10 -1.82 4.18 29.10 0.12 -1.70 16 9 C 0.51 13.64 7.69 87.66 0.67 14.32 16 10 O -0.58 -20.18 15.45 -3.03 -0.05 -20.23 16 11 N -0.61 -15.38 2.98 -819.83 -2.44 -17.82 16 12 C 0.11 2.42 6.31 86.22 0.54 2.96 16 13 C -0.14 -4.40 5.64 30.53 0.17 -4.23 16 14 C 0.18 6.49 2.20 45.02 0.10 6.59 16 15 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 16 N -0.73 -35.17 4.41 -322.80 -1.42 -36.59 16 17 C -0.23 -11.96 9.93 84.03 0.83 -11.13 16 18 H 0.08 3.96 7.83 -2.92 -0.02 3.94 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 21 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 C -0.10 -3.24 2.46 -10.73 -0.03 -3.27 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 C -0.13 -4.27 9.02 71.98 0.65 -3.62 16 28 C 0.13 3.54 5.72 86.35 0.49 4.03 16 29 C -0.12 -2.41 9.36 22.27 0.21 -2.20 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.12 1.86 7.62 -2.38 -0.02 1.85 16 39 H 0.13 1.67 7.90 -2.39 -0.02 1.65 16 40 H 0.11 1.68 5.93 -2.38 -0.01 1.66 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.37 19.69 7.50 -92.71 -0.70 18.99 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 51 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -69.91 407.05 4.19 -65.72 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.20 Total: 35.38 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.60 Total: -15.09 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.58 Total: -113.07 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.91 4.19 -65.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.452 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds