Wall clock time and date at job start Tue Mar 31 2020 16:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47320 * 2 1 4 4 C 1.38232 * 120.00119 * 89.99635 * 3 2 1 5 5 C 1.38233 * 120.00207 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99889 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46754 * 90.00774 * 7 6 5 9 9 O 1.21284 * 120.00255 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99568 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63459 * 359.97243 * 10 8 7 12 12 C 1.53186 * 108.77784 * 126.41444 * 11 10 8 13 13 C 1.53046 * 109.31216 * 54.63720 * 12 11 10 14 14 H 1.08998 * 109.44528 * 178.62064 * 13 12 11 15 15 N 1.46496 * 109.45966 * 58.65191 * 13 12 11 16 16 C 1.36945 * 119.99718 * 84.93473 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.53040 * 109.53260 * 298.63315 * 13 12 11 25 25 H 1.08994 * 109.50376 * 301.40924 * 24 13 12 26 26 C 1.53004 * 109.49449 * 181.34701 * 24 13 12 27 27 C 1.46932 * 120.62702 * 179.97438 * 10 8 7 28 28 C 1.38232 * 120.00041 * 0.25633 * 6 5 4 29 29 C 1.38239 * 119.99825 * 270.02304 * 3 2 1 30 30 H 1.08998 * 109.47237 * 300.00519 * 1 2 3 31 31 H 1.09003 * 109.46637 * 60.00067 * 1 2 3 32 32 H 1.09004 * 109.46816 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47263 * 239.99922 * 2 1 3 34 34 H 1.09000 * 109.47364 * 119.99896 * 2 1 3 35 35 H 1.07997 * 120.00183 * 0.02562 * 4 3 2 36 36 H 1.07998 * 120.00414 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47478 * 330.00198 * 7 6 5 38 38 H 1.09005 * 109.46858 * 210.00140 * 7 6 5 39 39 H 1.09000 * 109.58765 * 246.20698 * 11 10 8 40 40 H 1.09002 * 109.58532 * 6.48110 * 11 10 8 41 41 H 1.09002 * 109.49818 * 294.68368 * 12 11 10 42 42 H 1.08997 * 109.50005 * 174.58815 * 12 11 10 43 43 H 0.96996 * 120.00499 * 264.93203 * 15 13 12 44 44 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.46741 * 60.00019 * 26 24 13 46 46 H 1.08998 * 109.47250 * 180.02562 * 26 24 13 47 47 H 1.09000 * 109.47190 * 300.00489 * 26 24 13 48 48 H 1.08997 * 109.58545 * 113.79871 * 27 10 8 49 49 H 1.08995 * 109.58591 * 353.36973 * 27 10 8 50 50 H 1.07995 * 120.00543 * 179.72417 * 28 6 5 51 51 H 1.08000 * 120.00192 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9535 4.0275 0.0000 7 6 3.4548 5.4487 0.0000 8 6 4.9618 5.4497 0.0005 9 8 5.5690 4.3998 0.0013 10 7 5.6348 6.6175 0.0012 11 6 4.9134 7.8974 0.0007 12 6 5.4204 8.7496 1.1684 13 6 6.9418 8.8856 1.0725 14 1 7.3022 9.5120 1.8885 15 7 7.2970 9.5008 -0.2087 16 6 7.2971 10.8643 -0.3368 17 1 7.0349 11.4859 0.5065 18 6 7.6342 11.4472 -1.5506 19 7 7.9533 10.6896 -2.5785 20 14 7.6337 13.3070 -1.7256 21 1 6.2897 13.7627 -2.1630 22 1 7.9653 13.9274 -0.4178 23 1 8.6456 13.7094 -2.7352 24 6 7.5864 7.5010 1.1694 25 1 7.3024 7.0326 2.1117 26 6 9.1088 7.6411 1.1073 27 6 7.1041 6.6346 0.0023 28 6 2.7187 3.3775 -1.1972 29 6 2.2623 2.0725 -1.1972 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9026 3.8852 2.1324 37 1 3.0907 5.9624 0.8897 38 1 3.0915 5.9621 -0.8903 39 1 5.0956 8.4192 -0.9387 40 1 3.8450 7.7146 0.1158 41 1 5.1567 8.2693 2.1107 42 1 4.9632 9.7380 1.1228 43 1 7.5321 8.9425 -0.9662 44 1 8.1885 11.0970 -3.4268 45 1 9.4508 8.2599 1.9370 46 1 9.5675 6.6547 1.1759 47 1 9.3924 8.1086 0.1644 48 1 7.4653 7.0534 -0.9370 49 1 7.4813 5.6190 0.1210 50 1 2.8945 3.8880 -2.1325 51 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036207577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:03 Heat of formation + Delta-G solvation = -16.762468 kcal Electronic energy + Delta-G solvation = -28430.027777 eV Core-core repulsion = 24714.562225 eV Total energy + Delta-G solvation = -3715.465552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26257 -39.30038 -37.62628 -34.74655 -34.24913 -32.89879 -31.47641 -31.22323 -30.95873 -29.17563 -27.77272 -25.92625 -24.79759 -23.51468 -23.20569 -22.78614 -21.64617 -20.80530 -19.47363 -18.13546 -17.39475 -16.82696 -16.32962 -15.93931 -15.55285 -15.03219 -14.99092 -14.55296 -14.29988 -13.97811 -13.90620 -13.89206 -13.48317 -13.40292 -13.28194 -13.09501 -12.86037 -12.52525 -12.22743 -12.20237 -12.00951 -11.80165 -11.51318 -11.37142 -11.36253 -11.18706 -10.93035 -10.92121 -10.91500 -10.79408 -10.49140 -10.45194 -10.20214 -9.84489 -9.57245 -9.54451 -8.94780 -8.92348 -8.53479 -8.19033 -6.99405 -5.80868 -3.09373 1.27481 1.40282 2.88173 3.28390 3.39754 3.45847 3.47239 3.77052 4.54217 4.55653 4.65665 4.73364 4.84474 4.90394 4.95898 5.11859 5.21702 5.23058 5.30933 5.33582 5.37477 5.40363 5.48999 5.52620 5.54609 5.58679 5.63575 5.72654 5.74190 5.81803 5.88872 5.93601 6.02847 6.04301 6.07818 6.09780 6.25628 6.31053 6.37248 6.41327 6.50491 6.55114 6.58448 6.64420 6.68108 6.76654 6.93153 6.97573 7.01825 7.66717 7.75839 8.37673 8.45105 9.49265 10.06180 10.41249 11.41456 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002365 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.208291 B =11838.275826 C =12288.353293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.063 4.063 7 C -0.103 4.103 8 C 0.514 3.486 9 O -0.546 6.546 10 N -0.602 5.602 11 C 0.113 3.887 12 C -0.150 4.150 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.283 1.283 23 H -0.293 1.293 24 C -0.108 4.108 25 H 0.064 0.936 26 C -0.137 4.137 27 C 0.120 3.880 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.992 -16.419 6.913 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.063 4.063 7 C -0.142 4.142 8 C 0.302 3.698 9 O -0.424 6.424 10 N -0.335 5.335 11 C -0.010 4.010 12 C -0.191 4.191 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.361 5.361 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.209 1.209 23 H -0.219 1.219 24 C -0.128 4.128 25 H 0.083 0.917 26 C -0.195 4.195 27 C -0.003 4.003 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.653 -16.773 6.915 22.119 hybrid contribution 0.090 1.163 -0.427 1.242 sum -12.562 -15.610 6.487 21.061 Atomic orbital electron populations 1.21748 0.94849 1.01515 1.02212 1.20527 0.96039 0.92877 1.02729 1.19841 0.99594 0.96065 0.93281 1.20918 1.00513 0.94769 0.97374 1.20943 0.98884 0.94870 0.97368 1.19318 0.98642 0.94833 0.93535 1.20715 0.93252 0.95187 1.05095 1.20404 0.89465 0.83458 0.76503 1.90681 1.70106 1.31058 1.50530 1.48143 1.07261 1.05939 1.72138 1.21742 0.94637 0.83263 1.01341 1.22520 1.00842 0.99543 0.96185 1.20214 0.90914 0.91310 0.90780 0.93170 1.42479 1.81518 1.04015 1.08077 1.19215 1.38639 0.83003 0.95970 0.91263 1.24710 1.02454 0.97530 0.96139 1.69652 1.52906 1.33658 1.01825 0.86234 0.77206 0.85762 0.77217 1.21844 1.20870 1.21900 1.21689 0.96423 0.96925 0.97747 0.91728 1.21668 0.94131 1.00357 1.03362 1.21613 0.78698 1.00716 0.99233 1.20977 0.98704 0.94861 0.97471 1.20938 1.00417 0.94742 0.97406 0.92593 0.92563 0.92556 0.91155 0.91181 0.86369 0.86343 0.88126 0.88039 0.89702 0.91212 0.93344 0.90753 0.78085 0.93533 0.92836 0.93800 0.91051 0.90772 0.89915 0.86223 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.92 5.13 -104.63 -0.54 -1.46 16 4 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 5 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 6 C -0.06 -0.79 4.37 -104.62 -0.46 -1.25 16 7 C -0.10 -1.24 4.18 -29.03 -0.12 -1.36 16 8 C 0.51 8.14 7.69 -10.98 -0.08 8.05 16 9 O -0.55 -10.46 15.45 5.55 0.09 -10.38 16 10 N -0.60 -9.62 2.97 -172.79 -0.51 -10.14 16 11 C 0.11 1.72 6.08 -3.72 -0.02 1.69 16 12 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 13 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 N -0.72 -16.29 3.64 -53.39 -0.19 -16.48 16 16 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 17 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 20 Si 0.90 21.61 29.55 -169.99 -5.02 16.58 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 C -0.11 -1.77 2.67 -90.52 -0.24 -2.01 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 C -0.14 -2.22 9.05 37.16 0.34 -1.89 16 27 C 0.12 2.05 5.42 -3.73 -0.02 2.03 16 28 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 29 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.10 1.02 7.64 -51.93 -0.40 0.62 16 38 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 39 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 40 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.38 9.38 5.93 -40.82 -0.24 9.14 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.34 7.54 -51.93 -0.39 0.94 16 48 H 0.07 1.41 6.64 -51.93 -0.34 1.06 16 49 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 50 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 51 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -30.48 403.15 -10.64 -41.12 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -8.74 Total: 9.75 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.06 Total: -10.38 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.02 Total: -52.77 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.48 -10.64 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.354 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds