Wall clock time and date at job start Tue Mar 31 2020 16:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47320 * 2 1 4 4 C 1.38232 * 120.00119 * 89.99635 * 3 2 1 5 5 C 1.38233 * 120.00207 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99889 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46754 * 90.00774 * 7 6 5 9 9 O 1.21284 * 120.00255 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99568 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63459 * 359.97243 * 10 8 7 12 12 C 1.53186 * 108.77784 * 126.41444 * 11 10 8 13 13 C 1.53046 * 109.31216 * 54.63720 * 12 11 10 14 14 H 1.08998 * 109.44528 * 178.62064 * 13 12 11 15 15 N 1.46496 * 109.45966 * 58.65191 * 13 12 11 16 16 C 1.36945 * 119.99718 * 84.93473 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.53040 * 109.53260 * 298.63315 * 13 12 11 25 25 H 1.08994 * 109.50376 * 301.40924 * 24 13 12 26 26 C 1.53004 * 109.49449 * 181.34701 * 24 13 12 27 27 C 1.46932 * 120.62702 * 179.97438 * 10 8 7 28 28 C 1.38232 * 120.00041 * 0.25633 * 6 5 4 29 29 C 1.38239 * 119.99825 * 270.02304 * 3 2 1 30 30 H 1.08998 * 109.47237 * 300.00519 * 1 2 3 31 31 H 1.09003 * 109.46637 * 60.00067 * 1 2 3 32 32 H 1.09004 * 109.46816 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47263 * 239.99922 * 2 1 3 34 34 H 1.09000 * 109.47364 * 119.99896 * 2 1 3 35 35 H 1.07997 * 120.00183 * 0.02562 * 4 3 2 36 36 H 1.07998 * 120.00414 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47478 * 330.00198 * 7 6 5 38 38 H 1.09005 * 109.46858 * 210.00140 * 7 6 5 39 39 H 1.09000 * 109.58765 * 246.20698 * 11 10 8 40 40 H 1.09002 * 109.58532 * 6.48110 * 11 10 8 41 41 H 1.09002 * 109.49818 * 294.68368 * 12 11 10 42 42 H 1.08997 * 109.50005 * 174.58815 * 12 11 10 43 43 H 0.96996 * 120.00499 * 264.93203 * 15 13 12 44 44 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 45 45 H 1.09006 * 109.46741 * 60.00019 * 26 24 13 46 46 H 1.08998 * 109.47250 * 180.02562 * 26 24 13 47 47 H 1.09000 * 109.47190 * 300.00489 * 26 24 13 48 48 H 1.08997 * 109.58545 * 113.79871 * 27 10 8 49 49 H 1.08995 * 109.58591 * 353.36973 * 27 10 8 50 50 H 1.07995 * 120.00543 * 179.72417 * 28 6 5 51 51 H 1.08000 * 120.00192 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9535 4.0275 0.0000 7 6 3.4548 5.4487 0.0000 8 6 4.9618 5.4497 0.0005 9 8 5.5690 4.3998 0.0013 10 7 5.6348 6.6175 0.0012 11 6 4.9134 7.8974 0.0007 12 6 5.4204 8.7496 1.1684 13 6 6.9418 8.8856 1.0725 14 1 7.3022 9.5120 1.8885 15 7 7.2970 9.5008 -0.2087 16 6 7.2971 10.8643 -0.3368 17 1 7.0349 11.4859 0.5065 18 6 7.6342 11.4472 -1.5506 19 7 7.9533 10.6896 -2.5785 20 14 7.6337 13.3070 -1.7256 21 1 6.2897 13.7627 -2.1630 22 1 7.9653 13.9274 -0.4178 23 1 8.6456 13.7094 -2.7352 24 6 7.5864 7.5010 1.1694 25 1 7.3024 7.0326 2.1117 26 6 9.1088 7.6411 1.1073 27 6 7.1041 6.6346 0.0023 28 6 2.7187 3.3775 -1.1972 29 6 2.2623 2.0725 -1.1972 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9026 3.8852 2.1324 37 1 3.0907 5.9624 0.8897 38 1 3.0915 5.9621 -0.8903 39 1 5.0956 8.4192 -0.9387 40 1 3.8450 7.7146 0.1158 41 1 5.1567 8.2693 2.1107 42 1 4.9632 9.7380 1.1228 43 1 7.5321 8.9425 -0.9662 44 1 8.1885 11.0970 -3.4268 45 1 9.4508 8.2599 1.9370 46 1 9.5675 6.6547 1.1759 47 1 9.3924 8.1086 0.1644 48 1 7.4653 7.0534 -0.9370 49 1 7.4813 5.6190 0.1210 50 1 2.8945 3.8880 -2.1325 51 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036207577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:02 Heat of formation + Delta-G solvation = -31.321366 kcal Electronic energy + Delta-G solvation = -28430.659098 eV Core-core repulsion = 24714.562225 eV Total energy + Delta-G solvation = -3716.096873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46237 -40.26937 -38.97824 -35.83167 -35.53598 -34.47769 -32.99004 -32.12476 -31.78740 -30.88913 -28.74581 -27.22777 -26.21468 -25.24545 -24.00251 -23.62058 -23.02689 -21.65798 -20.71004 -19.56518 -19.22140 -18.11661 -17.31105 -16.92029 -16.59699 -16.50552 -15.99393 -15.90358 -15.86256 -15.51919 -14.88365 -14.77743 -14.58650 -14.56276 -14.38717 -14.21649 -14.10063 -13.71874 -13.58076 -13.10971 -12.98576 -12.97090 -12.84526 -12.80444 -12.62168 -12.49659 -12.37277 -12.10236 -12.04990 -11.95296 -11.87589 -11.66855 -11.63413 -11.56342 -11.14504 -10.91795 -10.76026 -9.77321 -9.55922 -9.38882 -8.90618 -7.87501 -5.13567 0.41850 0.55221 1.50196 1.50884 1.58564 1.65338 2.07177 2.60702 2.87583 3.46313 3.65210 3.72159 3.88000 3.91591 3.94694 4.01122 4.08125 4.12752 4.16760 4.20727 4.34277 4.42102 4.47575 4.51573 4.56223 4.59867 4.61822 4.68556 4.73013 4.75589 4.78450 4.86772 4.98083 5.05910 5.07126 5.10182 5.14768 5.17903 5.25028 5.26034 5.31090 5.33530 5.40352 5.49019 5.54017 5.61854 5.67705 5.71134 5.75656 6.15820 6.34326 6.51028 7.19995 7.41774 8.18615 8.41827 9.35745 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.002365 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.208291 B =11838.275826 C =12288.353293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.082 4.082 7 C -0.095 4.095 8 C 0.513 3.487 9 O -0.582 6.582 10 N -0.603 5.603 11 C 0.118 3.882 12 C -0.142 4.142 13 C 0.171 3.829 14 H 0.047 0.953 15 N -0.725 5.725 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.964 3.036 21 H -0.290 1.290 22 H -0.272 1.272 23 H -0.304 1.304 24 C -0.097 4.097 25 H 0.085 0.915 26 C -0.132 4.132 27 C 0.125 3.875 28 C -0.120 4.120 29 C -0.128 4.128 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.373 0.627 44 H 0.247 0.753 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.121 0.879 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 -17.153 8.919 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.134 4.134 8 C 0.303 3.697 9 O -0.463 6.463 10 N -0.334 5.334 11 C -0.004 4.004 12 C -0.183 4.183 13 C 0.062 3.938 14 H 0.065 0.935 15 N -0.366 5.366 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.621 5.621 20 Si 0.795 3.205 21 H -0.217 1.217 22 H -0.197 1.197 23 H -0.231 1.231 24 C -0.117 4.117 25 H 0.103 0.897 26 C -0.190 4.190 27 C 0.002 3.998 28 C -0.138 4.138 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.206 0.794 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.139 0.861 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.525 -17.500 8.978 24.451 hybrid contribution 0.663 1.281 -0.986 1.747 sum -13.862 -16.219 7.992 22.784 Atomic orbital electron populations 1.21722 0.93919 1.02406 1.01952 1.20581 0.96762 0.91348 1.03416 1.20190 0.98759 0.97233 0.92999 1.21228 1.00110 0.94681 0.98397 1.21193 0.98958 0.95474 0.97632 1.19461 0.99561 0.95287 0.93965 1.20741 0.89989 0.95695 1.07015 1.21074 0.90993 0.82517 0.75133 1.90662 1.71232 1.32264 1.52105 1.48192 1.06690 1.06502 1.72060 1.21714 0.96743 0.82509 0.99449 1.22392 0.98288 0.99770 0.97805 1.20461 0.92932 0.91937 0.88470 0.93505 1.42596 1.81562 1.03065 1.09353 1.19570 1.35891 0.84490 0.95646 0.90608 1.25396 1.03875 1.01149 0.96320 1.69810 1.55310 1.34938 1.02041 0.85271 0.76629 0.81580 0.77056 1.21733 1.19695 1.23125 1.21605 0.96240 0.95654 0.98196 0.89662 1.21607 0.94321 1.01263 1.01813 1.21420 0.79922 1.00217 0.98271 1.21184 0.99335 0.95616 0.97703 1.21203 1.00322 0.94607 0.98486 0.92726 0.92955 0.91104 0.90638 0.90358 0.84472 0.85220 0.85478 0.86560 0.93072 0.87288 0.90382 0.91312 0.79377 0.94462 0.92138 0.91930 0.94236 0.93518 0.90377 0.86058 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.08 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.09 -1.79 5.13 -19.87 -0.10 -1.90 16 4 C -0.13 -2.52 9.70 22.27 0.22 -2.31 16 5 C -0.11 -2.53 9.70 22.27 0.22 -2.31 16 6 C -0.08 -1.96 4.37 -19.86 -0.09 -2.05 16 7 C -0.10 -2.08 4.18 29.10 0.12 -1.96 16 8 C 0.51 15.58 7.69 87.66 0.67 16.26 16 9 O -0.58 -22.07 15.45 -3.04 -0.05 -22.12 16 10 N -0.60 -18.62 2.97 -818.98 -2.43 -21.05 16 11 C 0.12 3.40 6.08 86.36 0.53 3.93 16 12 C -0.14 -4.19 5.78 30.67 0.18 -4.01 16 13 C 0.17 6.08 2.53 45.02 0.11 6.19 16 14 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 15 N -0.72 -33.18 3.64 -322.82 -1.18 -34.35 16 16 C -0.22 -11.54 9.93 84.03 0.83 -10.70 16 17 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 18 C -0.08 -4.15 5.50 84.86 0.47 -3.68 16 19 N -0.97 -57.59 13.06 21.65 0.28 -57.31 16 20 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 24 C -0.10 -3.08 2.67 -10.73 -0.03 -3.11 16 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 26 C -0.13 -4.23 9.05 71.98 0.65 -3.57 16 27 C 0.12 4.28 5.42 86.35 0.47 4.74 16 28 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 29 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.13 2.09 7.64 -2.39 -0.02 2.07 16 38 H 0.12 2.20 7.88 -2.38 -0.02 2.18 16 39 H 0.05 1.85 7.74 -2.39 -0.02 1.83 16 40 H 0.11 2.28 5.93 -2.39 -0.01 2.27 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.37 18.85 5.93 -92.71 -0.55 18.30 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 48 H 0.05 1.85 6.64 -2.39 -0.02 1.84 16 49 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 50 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 51 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -66.93 403.15 4.58 -62.36 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.35 Total: 37.11 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.57 Total: -11.58 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.33 Total: -112.72 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.93 4.58 -62.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.034 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds