Wall clock time and date at job start Tue Mar 31 2020 16:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 C 1.38228 * 120.00177 * 90.00264 * 3 2 1 5 5 C 1.38235 * 120.00275 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99711 * 359.95330 * 5 4 3 7 7 C 1.50699 * 120.00066 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47285 * 89.99855 * 7 6 5 9 9 O 1.21282 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99930 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.63529 * 359.97438 * 10 8 7 12 12 C 1.53196 * 108.77653 * 126.36769 * 11 10 8 13 13 C 1.53039 * 109.31095 * 54.64295 * 12 11 10 14 14 H 1.09008 * 109.46242 * 58.63444 * 13 12 11 15 15 N 1.46496 * 109.46257 * 178.61500 * 13 12 11 16 16 C 1.36945 * 119.99718 * 274.99801 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53040 * 109.53726 * 298.63329 * 13 12 11 25 25 H 1.09008 * 109.49787 * 301.41446 * 24 13 12 26 26 C 1.53005 * 109.50042 * 181.31724 * 24 13 12 27 27 C 1.46930 * 120.63362 * 179.97438 * 10 8 7 28 28 C 1.38231 * 120.00030 * 0.27543 * 6 5 4 29 29 C 1.38234 * 119.99827 * 270.01925 * 3 2 1 30 30 H 1.09001 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47134 * 300.00185 * 1 2 3 32 32 H 1.09000 * 109.47238 * 60.00025 * 1 2 3 33 33 H 1.09002 * 109.47238 * 239.99269 * 2 1 3 34 34 H 1.09000 * 109.46725 * 119.99856 * 2 1 3 35 35 H 1.07999 * 120.00485 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00275 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47155 * 329.99446 * 7 6 5 38 38 H 1.09004 * 109.47102 * 210.00207 * 7 6 5 39 39 H 1.09000 * 109.58074 * 6.58761 * 11 10 8 40 40 H 1.08997 * 109.70590 * 246.23292 * 11 10 8 41 41 H 1.08997 * 109.49638 * 294.68972 * 12 11 10 42 42 H 1.08999 * 109.49394 * 174.58804 * 12 11 10 43 43 H 0.96996 * 120.00499 * 94.99531 * 15 13 12 44 44 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.46613 * 60.00054 * 26 24 13 46 46 H 1.08999 * 109.46921 * 179.97438 * 26 24 13 47 47 H 1.08997 * 109.46827 * 299.99734 * 26 24 13 48 48 H 1.09002 * 109.58562 * 353.41282 * 27 10 8 49 49 H 1.09003 * 109.58981 * 113.69506 * 27 10 8 50 50 H 1.07998 * 120.00036 * 179.72874 * 28 6 5 51 51 H 1.08005 * 119.99831 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3759 1.1971 6 6 2.9537 4.0274 -0.0001 7 6 3.4560 5.4482 -0.0002 8 6 4.9629 5.4483 0.0003 9 8 5.5694 4.3980 0.0002 10 7 5.6367 6.6155 0.0009 11 6 4.9161 7.8960 0.0004 12 6 5.4230 8.7474 1.1688 13 6 6.9445 8.8825 1.0739 14 1 7.2097 9.3402 0.1207 15 7 7.4292 9.7237 2.1710 16 6 7.4314 11.0867 2.0391 17 1 7.0762 11.5415 1.1263 18 6 7.8902 11.8838 3.0788 19 7 8.3236 11.3295 4.1912 20 14 7.8939 13.7431 2.8988 21 1 8.4270 14.3596 4.1401 22 1 8.7497 14.1272 1.7477 23 1 6.5072 14.2206 2.6657 24 6 7.5883 7.4975 1.1705 25 1 7.3034 7.0288 2.1126 26 6 9.1108 7.6365 1.1085 27 6 7.1059 6.6319 0.0019 28 6 2.7187 3.3774 -1.1972 29 6 2.2622 2.0726 -1.1972 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.0824 1.5636 2.1324 36 1 2.9026 3.8852 2.1323 37 1 3.0923 5.9622 0.8896 38 1 3.0928 5.9620 -0.8903 39 1 3.8478 7.7140 0.1175 40 1 5.0970 8.4191 -0.9385 41 1 5.1585 8.2669 2.1107 42 1 4.9665 9.7361 1.1232 43 1 7.7486 9.3152 2.9907 44 1 8.6446 11.8865 4.9176 45 1 9.4531 8.2548 1.9383 46 1 9.5688 6.6499 1.1779 47 1 9.3948 8.1039 0.1657 48 1 7.4825 5.6158 0.1199 49 1 7.4674 7.0487 -0.9382 50 1 2.8948 3.8878 -2.1325 51 1 2.0815 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036207580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:06 Heat of formation + Delta-G solvation = -19.041067 kcal Electronic energy + Delta-G solvation = -28013.777455 eV Core-core repulsion = 24298.213095 eV Total energy + Delta-G solvation = -3715.564360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36705 -39.34862 -37.60991 -34.82057 -34.60140 -32.93835 -31.55377 -31.29836 -31.02306 -29.32882 -27.83444 -26.01121 -24.89264 -23.43053 -22.85356 -22.71369 -21.66077 -20.85490 -19.82011 -18.84872 -17.15952 -17.00574 -16.43486 -16.01373 -15.67166 -15.10130 -15.00001 -14.93261 -14.14704 -13.96271 -13.95472 -13.78633 -13.63186 -13.49409 -13.31634 -13.16212 -12.94641 -12.49162 -12.35304 -12.21122 -12.03209 -11.86705 -11.70696 -11.57517 -11.42216 -11.18847 -10.98518 -10.97588 -10.94170 -10.81838 -10.63578 -10.40757 -10.24582 -9.78843 -9.69635 -9.62836 -8.98759 -8.92090 -8.60914 -8.45025 -6.98567 -5.79384 -3.08242 1.20424 1.33916 2.71891 3.10487 3.40987 3.45846 3.46869 3.68250 4.47267 4.55529 4.59823 4.64241 4.70564 4.83693 4.89576 5.06176 5.08052 5.15194 5.25770 5.26122 5.29161 5.32366 5.36239 5.40426 5.48168 5.51676 5.59208 5.61164 5.68237 5.68973 5.78617 5.85123 5.96250 5.97215 5.97942 6.08360 6.14441 6.28853 6.30754 6.38542 6.42955 6.49320 6.50762 6.53448 6.63674 6.80172 6.90768 6.92233 7.04253 7.54111 7.65969 8.28169 8.38849 9.50127 10.07750 10.42561 11.42952 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002120 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.145035 B =13202.284928 C =13488.981597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.065 4.065 7 C -0.103 4.103 8 C 0.516 3.484 9 O -0.541 6.541 10 N -0.608 5.608 11 C 0.106 3.894 12 C -0.152 4.152 13 C 0.184 3.816 14 H 0.048 0.952 15 N -0.720 5.720 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.287 1.287 24 C -0.109 4.109 25 H 0.068 0.932 26 C -0.136 4.136 27 C 0.120 3.880 28 C -0.103 4.103 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -18.275 -10.622 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.304 3.696 9 O -0.418 6.418 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.073 3.927 14 H 0.066 0.934 15 N -0.361 5.361 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.129 4.129 25 H 0.087 0.913 26 C -0.194 4.194 27 C -0.002 4.002 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.724 -18.631 -10.658 25.476 hybrid contribution 0.106 1.200 0.315 1.245 sum -13.617 -17.431 -10.343 24.418 Atomic orbital electron populations 1.21746 0.94809 1.01563 1.02215 1.20532 0.96073 0.92836 1.02772 1.19854 0.99427 0.96091 0.93270 1.20947 1.00303 0.94758 0.97457 1.20981 0.98600 0.94878 0.97473 1.19295 0.98938 0.94776 0.93574 1.20718 0.93004 0.95385 1.05152 1.20447 0.89561 0.83385 0.76255 1.90695 1.70146 1.30961 1.50004 1.48183 1.07261 1.05918 1.72717 1.21880 0.95915 0.83820 1.00117 1.22690 1.00658 0.99330 0.96664 1.20191 0.90207 0.89240 0.93029 0.93443 1.42403 1.75605 1.02734 1.15326 1.19168 1.35570 0.82607 0.99672 0.91290 1.24733 1.01902 0.97840 0.96398 1.69651 1.48655 1.34196 1.05515 0.86295 0.77598 0.85735 0.76696 1.21755 1.21318 1.21336 1.21744 0.96489 0.96764 0.97944 0.91314 1.21658 0.94102 1.00603 1.03028 1.21694 0.78596 1.01448 0.98484 1.20935 0.98971 0.94876 0.97306 1.20926 1.00507 0.94743 0.97399 0.92521 0.92553 0.92591 0.91155 0.91117 0.86260 0.86194 0.87884 0.88103 0.90489 0.91442 0.92195 0.90560 0.78218 0.93467 0.90764 0.93850 0.93071 0.89486 0.91720 0.86348 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.57 16 2 C -0.08 -0.63 6.06 -27.89 -0.17 -0.80 16 3 C -0.09 -0.86 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16 5 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.76 4.37 -104.63 -0.46 -1.22 16 7 C -0.10 -1.09 4.18 -29.04 -0.12 -1.22 16 8 C 0.52 7.32 7.69 -10.99 -0.08 7.23 16 9 O -0.54 -9.62 15.45 5.56 0.09 -9.53 16 10 N -0.61 -8.37 2.97 -172.74 -0.51 -8.89 16 11 C 0.11 1.30 6.34 -3.71 -0.02 1.28 16 12 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 13 C 0.18 3.41 2.19 -67.89 -0.15 3.26 16 14 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 15 N -0.72 -17.07 4.41 -53.39 -0.24 -17.31 16 16 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.11 -1.80 2.46 -90.48 -0.22 -2.02 16 25 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 26 C -0.14 -2.23 9.03 37.16 0.34 -1.89 16 27 C 0.12 1.76 5.72 -3.69 -0.02 1.74 16 28 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 29 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.10 0.96 7.64 -51.93 -0.40 0.56 16 38 H 0.10 0.84 7.88 -51.93 -0.41 0.44 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.38 9.87 7.51 -40.82 -0.31 9.56 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 407.09 15.07 6.13 6.13 Total: -1.00 -31.58 407.09 -10.73 -42.31 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.89 Total: 8.55 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -3.01 Total: -11.35 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.02 Total: -52.95 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.58 -10.73 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds