Wall clock time and date at job start Tue Mar 31 2020 16:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 C 1.38228 * 120.00177 * 90.00264 * 3 2 1 5 5 C 1.38235 * 120.00275 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99711 * 359.95330 * 5 4 3 7 7 C 1.50699 * 120.00066 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47285 * 89.99855 * 7 6 5 9 9 O 1.21282 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99930 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.63529 * 359.97438 * 10 8 7 12 12 C 1.53196 * 108.77653 * 126.36769 * 11 10 8 13 13 C 1.53039 * 109.31095 * 54.64295 * 12 11 10 14 14 H 1.09008 * 109.46242 * 58.63444 * 13 12 11 15 15 N 1.46496 * 109.46257 * 178.61500 * 13 12 11 16 16 C 1.36945 * 119.99718 * 274.99801 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53040 * 109.53726 * 298.63329 * 13 12 11 25 25 H 1.09008 * 109.49787 * 301.41446 * 24 13 12 26 26 C 1.53005 * 109.50042 * 181.31724 * 24 13 12 27 27 C 1.46930 * 120.63362 * 179.97438 * 10 8 7 28 28 C 1.38231 * 120.00030 * 0.27543 * 6 5 4 29 29 C 1.38234 * 119.99827 * 270.01925 * 3 2 1 30 30 H 1.09001 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47134 * 300.00185 * 1 2 3 32 32 H 1.09000 * 109.47238 * 60.00025 * 1 2 3 33 33 H 1.09002 * 109.47238 * 239.99269 * 2 1 3 34 34 H 1.09000 * 109.46725 * 119.99856 * 2 1 3 35 35 H 1.07999 * 120.00485 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00275 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47155 * 329.99446 * 7 6 5 38 38 H 1.09004 * 109.47102 * 210.00207 * 7 6 5 39 39 H 1.09000 * 109.58074 * 6.58761 * 11 10 8 40 40 H 1.08997 * 109.70590 * 246.23292 * 11 10 8 41 41 H 1.08997 * 109.49638 * 294.68972 * 12 11 10 42 42 H 1.08999 * 109.49394 * 174.58804 * 12 11 10 43 43 H 0.96996 * 120.00499 * 94.99531 * 15 13 12 44 44 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.46613 * 60.00054 * 26 24 13 46 46 H 1.08999 * 109.46921 * 179.97438 * 26 24 13 47 47 H 1.08997 * 109.46827 * 299.99734 * 26 24 13 48 48 H 1.09002 * 109.58562 * 353.41282 * 27 10 8 49 49 H 1.09003 * 109.58981 * 113.69506 * 27 10 8 50 50 H 1.07998 * 120.00036 * 179.72874 * 28 6 5 51 51 H 1.08005 * 119.99831 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3759 1.1971 6 6 2.9537 4.0274 -0.0001 7 6 3.4560 5.4482 -0.0002 8 6 4.9629 5.4483 0.0003 9 8 5.5694 4.3980 0.0002 10 7 5.6367 6.6155 0.0009 11 6 4.9161 7.8960 0.0004 12 6 5.4230 8.7474 1.1688 13 6 6.9445 8.8825 1.0739 14 1 7.2097 9.3402 0.1207 15 7 7.4292 9.7237 2.1710 16 6 7.4314 11.0867 2.0391 17 1 7.0762 11.5415 1.1263 18 6 7.8902 11.8838 3.0788 19 7 8.3236 11.3295 4.1912 20 14 7.8939 13.7431 2.8988 21 1 8.4270 14.3596 4.1401 22 1 8.7497 14.1272 1.7477 23 1 6.5072 14.2206 2.6657 24 6 7.5883 7.4975 1.1705 25 1 7.3034 7.0288 2.1126 26 6 9.1108 7.6365 1.1085 27 6 7.1059 6.6319 0.0019 28 6 2.7187 3.3774 -1.1972 29 6 2.2622 2.0726 -1.1972 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.0824 1.5636 2.1324 36 1 2.9026 3.8852 2.1323 37 1 3.0923 5.9622 0.8896 38 1 3.0928 5.9620 -0.8903 39 1 3.8478 7.7140 0.1175 40 1 5.0970 8.4191 -0.9385 41 1 5.1585 8.2669 2.1107 42 1 4.9665 9.7361 1.1232 43 1 7.7486 9.3152 2.9907 44 1 8.6446 11.8865 4.9176 45 1 9.4531 8.2548 1.9383 46 1 9.5688 6.6499 1.1779 47 1 9.3948 8.1039 0.1657 48 1 7.4825 5.6158 0.1199 49 1 7.4674 7.0487 -0.9382 50 1 2.8948 3.8878 -2.1325 51 1 2.0815 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036207580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:05 Heat of formation + Delta-G solvation = -35.049583 kcal Electronic energy + Delta-G solvation = -28014.471636 eV Core-core repulsion = 24298.213095 eV Total energy + Delta-G solvation = -3716.258541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43040 -40.23344 -38.90729 -36.14692 -35.54048 -34.46778 -33.06630 -32.13753 -31.78703 -30.98503 -28.74395 -27.22418 -26.43996 -24.52913 -23.87062 -23.62281 -23.05035 -21.68013 -21.11438 -20.01316 -19.01593 -18.16662 -17.32705 -16.85461 -16.74490 -16.58898 -15.99496 -15.92492 -15.68689 -15.44995 -14.97353 -14.79903 -14.59597 -14.56468 -14.35250 -14.19180 -13.96153 -13.79228 -13.53445 -13.14266 -13.06250 -12.96577 -12.82184 -12.80473 -12.70924 -12.49854 -12.42717 -12.19426 -12.05512 -12.01588 -11.83737 -11.68112 -11.64175 -11.63720 -11.14135 -10.94134 -10.76475 -9.77436 -9.63046 -9.39021 -8.95139 -7.89919 -5.17541 0.41771 0.55162 1.49270 1.51354 1.57221 1.64234 2.05340 2.58940 2.87370 3.43130 3.64125 3.72042 3.80278 3.90477 3.92685 3.99517 4.06107 4.12412 4.16907 4.20968 4.33382 4.41651 4.47374 4.51214 4.53343 4.59178 4.61432 4.68272 4.74981 4.78155 4.80198 4.82966 4.85570 4.99558 5.03249 5.06756 5.09781 5.16792 5.22221 5.24925 5.33607 5.39776 5.40778 5.52177 5.54182 5.57974 5.66455 5.70637 5.75765 6.15683 6.31212 6.46126 7.19328 7.37728 8.14364 8.37305 9.33404 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002120 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.145035 B =13202.284928 C =13488.981597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.096 4.096 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.113 3.887 12 C -0.144 4.144 13 C 0.178 3.822 14 H 0.048 0.952 15 N -0.732 5.732 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.969 3.031 21 H -0.302 1.302 22 H -0.280 1.280 23 H -0.277 1.277 24 C -0.099 4.099 25 H 0.050 0.950 26 C -0.130 4.130 27 C 0.127 3.873 28 C -0.114 4.114 29 C -0.127 4.127 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.040 0.960 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -18.698 -12.889 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.136 4.136 8 C 0.304 3.696 9 O -0.461 6.461 10 N -0.341 5.341 11 C -0.009 4.009 12 C -0.184 4.184 13 C 0.070 3.930 14 H 0.066 0.934 15 N -0.371 5.371 16 C -0.362 4.362 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.228 1.228 22 H -0.206 1.206 23 H -0.203 1.203 24 C -0.119 4.119 25 H 0.068 0.932 26 C -0.188 4.188 27 C 0.004 3.996 28 C -0.132 4.132 29 C -0.145 4.145 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.150 0.850 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.569 -19.057 -12.980 27.822 hybrid contribution 0.667 1.225 0.980 1.705 sum -14.902 -17.832 -12.000 26.154 Atomic orbital electron populations 1.21720 0.93939 1.02392 1.01948 1.20581 0.96753 0.91435 1.03382 1.20182 0.98778 0.97198 0.93046 1.21196 1.00371 0.94736 0.98439 1.21183 0.99312 0.95569 0.97786 1.19480 0.99575 0.95472 0.93835 1.20762 0.90032 0.95542 1.07222 1.21067 0.90966 0.82606 0.74971 1.90678 1.71266 1.32368 1.51809 1.48257 1.06854 1.06567 1.72394 1.21944 0.97471 0.82468 0.99016 1.22481 0.98293 0.99736 0.97932 1.20443 0.91991 0.89403 0.91199 0.93366 1.42596 1.75975 1.02496 1.16046 1.19570 1.33279 0.83936 0.99420 0.90346 1.25503 1.03020 1.01993 0.96514 1.69820 1.50837 1.35270 1.06335 0.85277 0.77849 0.80877 0.76154 1.22823 1.20584 1.20330 1.21606 0.96399 0.95798 0.98123 0.93172 1.21577 0.94227 1.01083 1.01935 1.21538 0.79618 1.00402 0.98023 1.21204 0.98919 0.95387 0.97697 1.21236 1.00139 0.94769 0.98322 0.91153 0.93000 0.92674 0.90344 0.90731 0.85096 0.86127 0.86402 0.85149 0.87018 0.89436 0.93650 0.91313 0.79883 0.94338 0.94112 0.91972 0.92259 0.90350 0.90045 0.85009 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.86 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.94 16 3 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 5 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 6 C -0.08 -1.81 4.37 -19.87 -0.09 -1.90 16 7 C -0.10 -1.79 4.18 29.10 0.12 -1.67 16 8 C 0.51 13.61 7.69 87.66 0.67 14.29 16 9 O -0.58 -20.21 15.45 -3.04 -0.05 -20.26 16 10 N -0.61 -15.38 2.97 -818.83 -2.43 -17.81 16 11 C 0.11 2.42 6.34 86.36 0.55 2.96 16 12 C -0.14 -4.40 5.66 30.67 0.17 -4.22 16 13 C 0.18 6.49 2.19 45.02 0.10 6.59 16 14 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 15 N -0.73 -35.18 4.41 -322.82 -1.42 -36.61 16 16 C -0.23 -12.19 9.93 84.03 0.83 -11.35 16 17 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 20 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.10 -3.24 2.46 -10.70 -0.03 -3.27 16 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 26 C -0.13 -4.27 9.03 71.98 0.65 -3.62 16 27 C 0.13 3.54 5.72 86.37 0.49 4.04 16 28 C -0.11 -2.30 9.70 22.27 0.22 -2.08 16 29 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 35 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.12 1.85 7.64 -2.39 -0.02 1.83 16 38 H 0.13 1.64 7.88 -2.38 -0.02 1.62 16 39 H 0.11 1.67 5.93 -2.39 -0.01 1.66 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.37 19.70 7.51 -92.71 -0.70 19.01 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 45 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.08 2.37 7.01 -2.39 -0.02 2.35 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 51 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.72 407.09 4.21 -65.51 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.20 Total: 35.30 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.60 Total: -14.81 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -3.57 Total: -113.02 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.72 4.21 -65.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.458 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds