Wall clock time and date at job start Tue Mar 31 2020 16:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38233 * 120.00099 * 269.72808 * 3 2 1 5 5 C 1.38234 * 119.99979 * 179.81297 * 4 3 2 6 6 C 1.38237 * 119.99884 * 0.39168 * 5 4 3 7 7 C 1.50702 * 120.00143 * 179.83552 * 6 5 4 8 8 C 1.50699 * 109.47351 * 270.02618 * 7 6 5 9 9 O 1.21285 * 119.99665 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00035 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63091 * 359.72050 * 10 8 7 12 12 C 1.52756 * 109.00621 * 233.58117 * 11 10 8 13 13 C 1.53041 * 109.38491 * 305.58744 * 12 11 10 14 14 H 1.09008 * 109.46054 * 181.26301 * 13 12 11 15 15 N 1.46494 * 109.45064 * 301.22614 * 13 12 11 16 16 C 1.36938 * 120.00514 * 275.06316 * 15 13 12 17 17 H 1.08007 * 119.99686 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00411 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99815 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.46882 * 90.00235 * 20 18 16 22 22 H 1.48497 * 109.47210 * 210.00240 * 20 18 16 23 23 H 1.48500 * 109.47033 * 330.00430 * 20 18 16 24 24 C 1.53040 * 109.53678 * 61.24450 * 13 12 11 25 25 H 1.08993 * 109.49806 * 58.58589 * 24 13 12 26 26 C 1.53005 * 109.49536 * 178.68219 * 24 13 12 27 27 C 1.46932 * 120.62970 * 179.97438 * 10 8 7 28 28 C 1.38238 * 120.00065 * 359.86304 * 6 5 4 29 29 C 1.38234 * 120.00093 * 359.94982 * 28 6 5 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.08003 * 119.99927 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00482 * 180.23135 * 5 4 3 37 37 H 1.09009 * 109.46761 * 30.02385 * 7 6 5 38 38 H 1.09003 * 109.47364 * 150.02273 * 7 6 5 39 39 H 1.08989 * 109.58563 * 353.41773 * 11 10 8 40 40 H 1.08998 * 109.58546 * 113.84495 * 11 10 8 41 41 H 1.09006 * 109.56458 * 185.55477 * 12 11 10 42 42 H 1.08999 * 109.36450 * 65.50113 * 12 11 10 43 43 H 0.97002 * 120.00317 * 95.06213 * 15 13 12 44 44 H 0.97003 * 119.99349 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46556 * 179.83128 * 26 24 13 46 46 H 1.08992 * 109.47074 * 299.83372 * 26 24 13 47 47 H 1.09004 * 109.46840 * 59.83955 * 26 24 13 48 48 H 1.09001 * 109.58392 * 246.15993 * 27 10 8 49 49 H 1.08999 * 109.58356 * 6.43887 * 27 10 8 50 50 H 1.08004 * 119.99911 * 179.97438 * 28 6 5 51 51 H 1.07995 * 119.99943 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3751 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4562 5.4482 0.0002 8 6 4.9631 5.4488 0.0009 9 8 5.5699 4.3986 0.0018 10 7 5.6366 6.6162 0.0006 11 6 4.9155 7.8963 -0.0067 12 6 5.4240 8.7471 -1.1691 13 6 6.9453 8.8827 -1.0719 14 1 7.3070 9.5082 -1.8881 15 7 7.2993 9.4991 0.2090 16 6 7.2998 10.8625 0.3360 17 1 7.0396 11.4836 -0.5085 18 6 7.6358 11.4466 1.5495 19 7 7.6367 12.7572 1.6712 20 14 8.0865 10.3726 3.0099 21 1 9.5504 10.1232 3.0078 22 1 7.7036 11.0619 4.2682 23 1 7.3639 9.0787 2.9146 24 6 7.5896 7.4978 -1.1668 25 1 7.3063 7.0285 -2.1088 26 6 9.1120 7.6374 -1.1025 27 6 7.1058 6.6328 0.0019 28 6 2.7235 3.3757 1.1973 29 6 2.2627 2.0724 1.1973 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0927 1.5598 -2.1324 36 1 2.9059 3.8841 -2.1323 37 1 3.0931 5.9618 -0.8902 38 1 3.0922 5.9621 0.8899 39 1 3.8480 7.7137 -0.1289 40 1 5.0935 8.4212 0.9319 41 1 4.9671 9.7358 -1.1250 42 1 5.1611 8.2660 -2.1111 43 1 7.5334 8.9414 0.9674 44 1 7.8711 13.1652 2.5195 45 1 9.5703 6.6505 -1.1671 46 1 9.4557 8.2528 -1.9338 47 1 9.3942 8.1081 -0.1608 48 1 7.4656 7.0528 0.9412 49 1 7.4828 5.6165 -0.1121 50 1 2.9029 3.8850 2.1326 51 1 2.0821 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036207582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:08 Heat of formation + Delta-G solvation = -28.638354 kcal Electronic energy + Delta-G solvation = -28552.613735 eV Core-core repulsion = 24836.633206 eV Total energy + Delta-G solvation = -3715.980529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51773 -40.30665 -39.06684 -35.93610 -35.54824 -34.52428 -33.18022 -32.14346 -31.79675 -31.45318 -28.76890 -27.31967 -26.27486 -24.96990 -24.01957 -23.63033 -23.02355 -21.68083 -20.78413 -19.86901 -19.50608 -18.15253 -17.33650 -16.93856 -16.65434 -16.54495 -16.19768 -15.93161 -15.79739 -15.43943 -15.10046 -14.81012 -14.58909 -14.57243 -14.47425 -14.36819 -14.13295 -13.75204 -13.65132 -13.31515 -13.13367 -13.00919 -12.96421 -12.82443 -12.65786 -12.51764 -12.44775 -12.06188 -12.04945 -11.96949 -11.92408 -11.68639 -11.66625 -11.64451 -11.20156 -10.98268 -10.80608 -9.78289 -9.63102 -9.39991 -9.22970 -7.98250 -5.28747 0.40783 0.54330 1.35781 1.37653 1.44326 1.62527 2.02559 2.48747 2.86268 3.33943 3.61701 3.62168 3.70205 3.88825 3.91226 3.98385 3.99873 4.02907 4.15637 4.19535 4.28850 4.34824 4.46422 4.48562 4.52133 4.58504 4.60636 4.62231 4.69119 4.74488 4.77413 4.80495 4.95765 5.00716 5.06088 5.09237 5.12185 5.15317 5.21026 5.24124 5.26770 5.29407 5.39312 5.42831 5.52982 5.63369 5.69834 5.74882 5.84678 6.14724 6.26008 6.45621 7.12690 7.16829 7.89871 8.07849 9.23570 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002543 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.193556 B =11008.639158 C =11361.719317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.082 4.082 7 C -0.097 4.097 8 C 0.515 3.485 9 O -0.579 6.579 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.143 4.143 13 C 0.175 3.825 14 H 0.050 0.950 15 N -0.742 5.742 16 C -0.210 4.210 17 H 0.063 0.937 18 C -0.061 4.061 19 N -0.984 5.984 20 Si 0.939 3.061 21 H -0.284 1.284 22 H -0.300 1.300 23 H -0.258 1.258 24 C -0.099 4.099 25 H 0.090 0.910 26 C -0.137 4.137 27 C 0.120 3.880 28 C -0.119 4.119 29 C -0.129 4.129 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.361 0.639 44 H 0.254 0.746 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.123 0.877 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 -23.786 -6.074 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.136 4.136 8 C 0.305 3.695 9 O -0.459 6.459 10 N -0.338 5.338 11 C -0.008 4.008 12 C -0.184 4.184 13 C 0.067 3.933 14 H 0.068 0.932 15 N -0.386 5.386 16 C -0.341 4.341 17 H 0.081 0.919 18 C -0.252 4.252 19 N -0.635 5.635 20 Si 0.769 3.231 21 H -0.211 1.211 22 H -0.227 1.227 23 H -0.183 1.183 24 C -0.119 4.119 25 H 0.108 0.892 26 C -0.195 4.195 27 C -0.003 4.003 28 C -0.137 4.137 29 C -0.147 4.147 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.195 0.805 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.102 0.898 50 H 0.141 0.859 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.540 -24.121 -6.133 28.333 hybrid contribution 0.769 0.392 1.317 1.574 sum -12.771 -23.729 -4.816 27.374 Atomic orbital electron populations 1.21720 0.93958 1.02398 1.01947 1.20582 0.96739 0.91400 1.03405 1.20188 0.98745 0.97218 0.93031 1.21230 1.00137 0.94740 0.98379 1.21195 0.98968 0.95411 0.97690 1.19459 0.99613 0.95291 0.93903 1.20757 0.90053 0.95658 1.07123 1.21045 0.90945 0.82491 0.75035 1.90670 1.71207 1.32176 1.51878 1.48214 1.06704 1.06488 1.72346 1.21677 0.97116 0.82510 0.99449 1.22297 0.97955 0.99866 0.98250 1.20440 0.93116 0.92039 0.87684 0.93213 1.42811 1.83263 1.02511 1.10023 1.19001 1.35829 0.82874 0.96390 0.91927 1.25295 1.03425 0.96236 1.00246 1.69858 1.57928 1.10020 1.25714 0.85648 0.78274 0.79085 0.80118 1.21105 1.22739 1.18258 1.21659 0.96376 0.95209 0.98682 0.89192 1.21661 0.94092 1.01674 1.02031 1.21523 0.79972 1.00735 0.98118 1.21182 0.99284 0.95548 0.97726 1.21204 1.00310 0.94711 0.98441 0.91137 0.92937 0.92758 0.90394 0.90621 0.84571 0.85249 0.85504 0.86373 0.87023 0.92688 0.91496 0.90102 0.80454 0.93665 0.91454 0.92066 0.93951 0.93291 0.89758 0.85929 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.08 -1.10 6.07 29.85 0.18 -0.92 16 3 C -0.09 -1.70 5.13 -19.86 -0.10 -1.80 16 4 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 5 C -0.11 -2.38 9.70 22.27 0.22 -2.17 16 6 C -0.08 -1.82 4.37 -19.86 -0.09 -1.91 16 7 C -0.10 -1.91 4.18 29.10 0.12 -1.79 16 8 C 0.51 14.19 7.69 87.66 0.67 14.87 16 9 O -0.58 -20.27 15.45 -3.05 -0.05 -20.32 16 10 N -0.61 -16.76 2.98 -819.67 -2.44 -19.20 16 11 C 0.11 2.98 6.06 86.22 0.52 3.51 16 12 C -0.14 -4.02 5.76 30.53 0.18 -3.85 16 13 C 0.18 5.89 2.53 45.02 0.11 6.00 16 14 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 15 N -0.74 -31.40 3.45 -322.81 -1.11 -32.52 16 16 C -0.21 -11.10 10.41 84.03 0.87 -10.23 16 17 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 18 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 19 N -0.98 -61.43 13.97 21.65 0.30 -61.12 16 20 Si 0.94 44.81 27.74 68.60 1.90 46.71 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.26 -11.20 6.52 99.48 0.65 -10.55 16 24 C -0.10 -2.84 2.67 -10.70 -0.03 -2.87 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 C -0.14 -3.87 9.06 71.98 0.65 -3.22 16 27 C 0.12 3.60 5.43 86.37 0.47 4.07 16 28 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 29 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.13 1.86 7.62 -2.38 -0.02 1.85 16 38 H 0.12 1.94 7.90 -2.39 -0.02 1.93 16 39 H 0.11 2.07 5.93 -2.39 -0.01 2.06 16 40 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 41 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.36 15.32 3.78 -92.71 -0.35 14.96 16 44 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 48 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 49 H 0.08 2.60 7.00 -2.39 -0.02 2.58 16 50 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 51 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -69.80 400.00 4.70 -65.10 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.49 Total: 32.44 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.61 Total: -11.09 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -3.25 Total: -112.84 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Total: -69.80 4.70 -65.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.457 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds