Wall clock time and date at job start Tue Mar 31 2020 16:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38233 * 120.00099 * 269.72808 * 3 2 1 5 5 C 1.38234 * 119.99979 * 179.81297 * 4 3 2 6 6 C 1.38239 * 119.99981 * 0.41408 * 5 4 3 7 7 C 1.50697 * 119.99970 * 179.79499 * 6 5 4 8 8 C 1.50708 * 109.47009 * 270.01814 * 7 6 5 9 9 O 1.21284 * 119.99719 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99899 * 179.97438 * 8 7 6 11 11 C 1.46928 * 120.63290 * 359.73207 * 10 8 7 12 12 C 1.52767 * 109.00549 * 233.57874 * 11 10 8 13 13 C 1.53036 * 109.37986 * 305.58674 * 12 11 10 14 14 H 1.09000 * 109.45018 * 301.22159 * 13 12 11 15 15 N 1.46505 * 109.45508 * 181.26493 * 13 12 11 16 16 C 1.36935 * 120.00257 * 84.93114 * 15 13 12 17 17 H 1.07999 * 119.99879 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99845 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00264 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00348 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47225 * 89.99889 * 20 18 16 22 22 H 1.48498 * 109.47351 * 210.00135 * 20 18 16 23 23 H 1.48504 * 109.47008 * 330.00065 * 20 18 16 24 24 C 1.53035 * 109.54429 * 61.24121 * 13 12 11 25 25 H 1.09008 * 109.49344 * 58.57946 * 24 13 12 26 26 C 1.52998 * 109.50233 * 178.67653 * 24 13 12 27 27 C 1.46928 * 120.62780 * 180.02562 * 10 8 7 28 28 C 1.38240 * 119.99839 * 359.81825 * 6 5 4 29 29 C 1.38234 * 120.00218 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.08003 * 119.99927 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.00261 * 180.20628 * 5 4 3 37 37 H 1.08996 * 109.47663 * 30.02167 * 7 6 5 38 38 H 1.09002 * 109.46914 * 150.02647 * 7 6 5 39 39 H 1.09001 * 109.58530 * 353.41229 * 11 10 8 40 40 H 1.08996 * 109.58466 * 113.83925 * 11 10 8 41 41 H 1.08995 * 109.56049 * 185.54929 * 12 11 10 42 42 H 1.09002 * 109.35788 * 65.49872 * 12 11 10 43 43 H 0.97006 * 119.99778 * 264.92762 * 15 13 12 44 44 H 0.96999 * 120.00909 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.46932 * 179.83387 * 26 24 13 46 46 H 1.08998 * 109.47370 * 299.84497 * 26 24 13 47 47 H 1.09006 * 109.46672 * 59.84434 * 26 24 13 48 48 H 1.08999 * 109.59316 * 246.16214 * 27 10 8 49 49 H 1.08999 * 109.58618 * 6.59016 * 27 10 8 50 50 H 1.08000 * 119.99654 * 179.97438 * 28 6 5 51 51 H 1.07995 * 119.99943 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3751 -1.1971 6 6 2.9547 4.0271 0.0001 7 6 3.4575 5.4477 0.0001 8 6 4.9645 5.4473 0.0010 9 8 5.5706 4.3967 0.0011 10 7 5.6387 6.6143 0.0006 11 6 4.9186 7.8949 -0.0066 12 6 5.4276 8.7454 -1.1690 13 6 6.9489 8.8799 -1.0718 14 1 7.2126 9.3384 -0.1187 15 7 7.4356 9.7203 -2.1688 16 6 7.4368 11.0834 -2.0384 17 1 7.0794 11.5390 -1.1268 18 6 7.8984 11.8795 -3.0776 19 7 7.9001 13.1897 -2.9522 20 14 8.5186 11.0915 -4.6536 21 1 7.3900 10.9343 -5.6059 22 1 9.5626 11.9551 -5.2614 23 1 9.0963 9.7583 -4.3463 24 6 7.5924 7.4946 -1.1666 25 1 7.3087 7.0254 -2.1087 26 6 9.1148 7.6331 -1.1025 27 6 7.1079 6.6299 0.0009 28 6 2.7235 3.3757 1.1973 29 6 2.2623 2.0725 1.1973 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0927 1.5598 -2.1324 36 1 2.9062 3.8839 -2.1323 37 1 3.0948 5.9616 -0.8901 38 1 3.0938 5.9618 0.8899 39 1 3.8508 7.7130 -0.1288 40 1 5.0969 8.4196 0.9320 41 1 4.9713 9.7343 -1.1249 42 1 5.1643 8.2644 -2.1111 43 1 7.7570 9.3110 -2.9874 44 1 8.2223 13.7461 -3.6784 45 1 9.5724 6.6460 -1.1671 46 1 9.4590 8.2485 -1.9337 47 1 9.3974 8.1037 -0.1607 48 1 7.4688 7.0492 0.9401 49 1 7.4842 5.6137 -0.1164 50 1 2.9032 3.8849 2.1325 51 1 2.0821 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036207585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:12 Heat of formation + Delta-G solvation = -15.147135 kcal Electronic energy + Delta-G solvation = -28089.754336 eV Core-core repulsion = 24374.358830 eV Total energy + Delta-G solvation = -3715.395506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43322 -39.40701 -37.73719 -34.86185 -34.74170 -33.00991 -31.64838 -31.36754 -31.05730 -29.86953 -27.89828 -26.15414 -25.01222 -23.41872 -22.88740 -22.54294 -21.60567 -20.88597 -20.00119 -18.98041 -17.58121 -17.06866 -16.48045 -16.05495 -15.72952 -15.13991 -15.08706 -14.92495 -14.39782 -14.00979 -13.98211 -13.84680 -13.67230 -13.53542 -13.37004 -13.14672 -12.99993 -12.53543 -12.45691 -12.28986 -12.11066 -11.95196 -11.88031 -11.73536 -11.45415 -11.43642 -11.07643 -11.02402 -11.00788 -10.90925 -10.69845 -10.54115 -10.25682 -9.80732 -9.77347 -9.61394 -9.02160 -8.96252 -8.64468 -8.53006 -7.30763 -5.81097 -3.16542 1.16872 1.30543 2.66013 3.04022 3.34098 3.37490 3.42802 3.64391 4.43833 4.55312 4.56653 4.59787 4.65439 4.80318 4.86176 4.98867 5.04024 5.05204 5.13148 5.16181 5.23451 5.25056 5.28350 5.36837 5.43302 5.44992 5.52815 5.57575 5.58541 5.65928 5.68132 5.82160 5.83825 5.92684 5.94521 5.96392 6.01773 6.09925 6.26043 6.26889 6.27527 6.40078 6.46001 6.47167 6.50371 6.66126 6.76456 6.87621 6.91849 7.47202 7.94428 8.22027 8.37996 9.16237 9.89157 10.09150 11.37117 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.002223 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.026726 B =12593.022814 C =12766.850075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.103 4.103 8 C 0.516 3.484 9 O -0.540 6.540 10 N -0.609 5.609 11 C 0.106 3.894 12 C -0.153 4.153 13 C 0.189 3.811 14 H 0.057 0.943 15 N -0.745 5.745 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.113 4.113 25 H 0.067 0.933 26 C -0.137 4.137 27 C 0.121 3.879 28 C -0.102 4.102 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 -22.583 8.163 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.304 3.696 9 O -0.418 6.418 10 N -0.342 5.342 11 C -0.017 4.017 12 C -0.194 4.194 13 C 0.079 3.921 14 H 0.075 0.925 15 N -0.387 5.387 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.133 4.133 25 H 0.086 0.914 26 C -0.195 4.195 27 C -0.001 4.001 28 C -0.120 4.120 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.944 -22.875 8.250 27.547 hybrid contribution 0.475 -0.145 -1.307 1.399 sum -12.469 -23.020 6.942 27.085 Atomic orbital electron populations 1.21745 0.94787 1.01583 1.02227 1.20535 0.96097 0.92818 1.02775 1.19861 0.99378 0.96105 0.93266 1.20947 1.00327 0.94758 0.97459 1.20972 0.98688 0.94858 0.97441 1.19294 0.99011 0.94754 0.93575 1.20719 0.92914 0.95418 1.05207 1.20466 0.89596 0.83355 0.76200 1.90697 1.70178 1.30927 1.49950 1.48195 1.07190 1.05989 1.72814 1.21797 0.96017 0.83693 1.00182 1.22576 1.00215 0.99799 0.96811 1.20167 0.90341 0.88817 0.92805 0.92523 1.42775 1.76912 1.03660 1.15351 1.19046 1.35927 0.80377 1.01848 0.89198 1.24657 1.01310 0.95125 0.97956 1.69690 1.52853 1.02583 1.32963 0.86591 0.78719 0.78517 0.84901 1.21180 1.21782 1.20327 1.21777 0.96492 0.96862 0.98215 0.91409 1.21673 0.94119 1.00683 1.03064 1.21651 0.78716 1.01381 0.98398 1.20941 0.98891 0.94879 0.97325 1.20932 1.00440 0.94775 0.97415 0.92556 0.92507 0.92570 0.91126 0.91139 0.86273 0.86247 0.87884 0.88014 0.90305 0.91219 0.89982 0.92313 0.80637 0.93063 0.93595 0.91416 0.92567 0.91487 0.89380 0.86310 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.08 -0.61 6.07 -27.88 -0.17 -0.78 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 5 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 6 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 7 C -0.10 -1.04 4.18 -29.03 -0.12 -1.17 16 8 C 0.52 7.01 7.69 -10.98 -0.08 6.92 16 9 O -0.54 -9.27 15.45 5.55 0.09 -9.18 16 10 N -0.61 -7.97 2.98 -173.05 -0.52 -8.48 16 11 C 0.11 1.25 6.31 -3.93 -0.02 1.22 16 12 C -0.15 -2.34 5.64 -26.83 -0.15 -2.49 16 13 C 0.19 3.33 2.19 -67.89 -0.15 3.18 16 14 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 15 N -0.75 -16.57 4.22 -53.39 -0.23 -16.79 16 16 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 20 Si 0.88 21.70 27.73 -169.99 -4.71 16.98 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 24 C -0.11 -1.75 2.46 -90.52 -0.22 -1.97 16 25 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 26 C -0.14 -2.09 9.02 37.16 0.34 -1.76 16 27 C 0.12 1.68 5.72 -3.73 -0.02 1.66 16 28 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 29 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.10 0.90 7.62 -51.93 -0.40 0.51 16 38 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.36 8.09 5.37 -40.82 -0.22 7.87 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.18 7.36 -51.93 -0.38 0.80 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 50 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -32.54 403.94 -10.38 -42.93 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.85 Total: 7.26 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.02 Total: -10.97 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.03 Total: -53.11 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.54 -10.38 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.778 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds