Wall clock time and date at job start Tue Mar 31 2020 16:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38233 * 120.00099 * 269.72808 * 3 2 1 5 5 C 1.38234 * 119.99979 * 179.81297 * 4 3 2 6 6 C 1.38239 * 119.99981 * 0.41408 * 5 4 3 7 7 C 1.50697 * 119.99970 * 179.79499 * 6 5 4 8 8 C 1.50708 * 109.47009 * 270.01814 * 7 6 5 9 9 O 1.21284 * 119.99719 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99899 * 179.97438 * 8 7 6 11 11 C 1.46928 * 120.63290 * 359.73207 * 10 8 7 12 12 C 1.52767 * 109.00549 * 233.57874 * 11 10 8 13 13 C 1.53036 * 109.37986 * 305.58674 * 12 11 10 14 14 H 1.09000 * 109.45018 * 301.22159 * 13 12 11 15 15 N 1.46505 * 109.45508 * 181.26493 * 13 12 11 16 16 C 1.36935 * 120.00257 * 84.93114 * 15 13 12 17 17 H 1.07999 * 119.99879 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99845 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00264 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00348 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47225 * 89.99889 * 20 18 16 22 22 H 1.48498 * 109.47351 * 210.00135 * 20 18 16 23 23 H 1.48504 * 109.47008 * 330.00065 * 20 18 16 24 24 C 1.53035 * 109.54429 * 61.24121 * 13 12 11 25 25 H 1.09008 * 109.49344 * 58.57946 * 24 13 12 26 26 C 1.52998 * 109.50233 * 178.67653 * 24 13 12 27 27 C 1.46928 * 120.62780 * 180.02562 * 10 8 7 28 28 C 1.38240 * 119.99839 * 359.81825 * 6 5 4 29 29 C 1.38234 * 120.00218 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.08003 * 119.99927 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.00261 * 180.20628 * 5 4 3 37 37 H 1.08996 * 109.47663 * 30.02167 * 7 6 5 38 38 H 1.09002 * 109.46914 * 150.02647 * 7 6 5 39 39 H 1.09001 * 109.58530 * 353.41229 * 11 10 8 40 40 H 1.08996 * 109.58466 * 113.83925 * 11 10 8 41 41 H 1.08995 * 109.56049 * 185.54929 * 12 11 10 42 42 H 1.09002 * 109.35788 * 65.49872 * 12 11 10 43 43 H 0.97006 * 119.99778 * 264.92762 * 15 13 12 44 44 H 0.96999 * 120.00909 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.46932 * 179.83387 * 26 24 13 46 46 H 1.08998 * 109.47370 * 299.84497 * 26 24 13 47 47 H 1.09006 * 109.46672 * 59.84434 * 26 24 13 48 48 H 1.08999 * 109.59316 * 246.16214 * 27 10 8 49 49 H 1.08999 * 109.58618 * 6.59016 * 27 10 8 50 50 H 1.08000 * 119.99654 * 179.97438 * 28 6 5 51 51 H 1.07995 * 119.99943 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3751 -1.1971 6 6 2.9547 4.0271 0.0001 7 6 3.4575 5.4477 0.0001 8 6 4.9645 5.4473 0.0010 9 8 5.5706 4.3967 0.0011 10 7 5.6387 6.6143 0.0006 11 6 4.9186 7.8949 -0.0066 12 6 5.4276 8.7454 -1.1690 13 6 6.9489 8.8799 -1.0718 14 1 7.2126 9.3384 -0.1187 15 7 7.4356 9.7203 -2.1688 16 6 7.4368 11.0834 -2.0384 17 1 7.0794 11.5390 -1.1268 18 6 7.8984 11.8795 -3.0776 19 7 7.9001 13.1897 -2.9522 20 14 8.5186 11.0915 -4.6536 21 1 7.3900 10.9343 -5.6059 22 1 9.5626 11.9551 -5.2614 23 1 9.0963 9.7583 -4.3463 24 6 7.5924 7.4946 -1.1666 25 1 7.3087 7.0254 -2.1087 26 6 9.1148 7.6331 -1.1025 27 6 7.1079 6.6299 0.0009 28 6 2.7235 3.3757 1.1973 29 6 2.2623 2.0725 1.1973 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0927 1.5598 -2.1324 36 1 2.9062 3.8839 -2.1323 37 1 3.0948 5.9616 -0.8901 38 1 3.0938 5.9618 0.8899 39 1 3.8508 7.7130 -0.1288 40 1 5.0969 8.4196 0.9320 41 1 4.9713 9.7343 -1.1249 42 1 5.1643 8.2644 -2.1111 43 1 7.7570 9.3110 -2.9874 44 1 8.2223 13.7461 -3.6784 45 1 9.5724 6.6460 -1.1671 46 1 9.4590 8.2485 -1.9337 47 1 9.3974 8.1037 -0.1607 48 1 7.4688 7.0492 0.9401 49 1 7.4842 5.6137 -0.1164 50 1 2.9032 3.8849 2.1325 51 1 2.0821 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036207585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:11 Heat of formation + Delta-G solvation = -32.342649 kcal Electronic energy + Delta-G solvation = -28090.499989 eV Core-core repulsion = 24374.358830 eV Total energy + Delta-G solvation = -3716.141160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45202 -40.25266 -38.97834 -36.25728 -35.54274 -34.50311 -33.25482 -32.14991 -31.78895 -31.46732 -28.75494 -27.31222 -26.42246 -24.34666 -23.81964 -23.62433 -23.00038 -21.71701 -21.27286 -20.14022 -19.38783 -18.15800 -17.33523 -16.86723 -16.74259 -16.59076 -16.06919 -15.98529 -15.89891 -15.26692 -14.94423 -14.83244 -14.60069 -14.56967 -14.45390 -14.30937 -14.06482 -13.82652 -13.59884 -13.42931 -13.10931 -12.97433 -12.95841 -12.83053 -12.78565 -12.50388 -12.40736 -12.07412 -12.05328 -12.02223 -11.87344 -11.76184 -11.67808 -11.64128 -11.18234 -10.98070 -10.80018 -9.77633 -9.65082 -9.39348 -9.26250 -7.99666 -5.31318 0.41540 0.55011 1.37945 1.39066 1.46538 1.63895 2.03916 2.49179 2.86996 3.32069 3.53208 3.64361 3.71177 3.88204 3.90179 3.97728 4.02132 4.06956 4.16516 4.20582 4.29708 4.37918 4.47006 4.49638 4.52021 4.58714 4.61264 4.64229 4.73989 4.75141 4.78395 4.81481 4.84354 4.95942 5.01133 5.06398 5.09338 5.14572 5.20415 5.24694 5.27579 5.36818 5.39310 5.49400 5.53904 5.63527 5.70337 5.75590 5.80956 6.15411 6.24506 6.44716 7.10583 7.18762 7.87803 8.05851 9.21749 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.002223 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.026726 B =12593.022814 C =12766.850075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.119 4.119 6 C -0.083 4.083 7 C -0.097 4.097 8 C 0.515 3.485 9 O -0.580 6.580 10 N -0.609 5.609 11 C 0.113 3.887 12 C -0.145 4.145 13 C 0.181 3.819 14 H 0.048 0.952 15 N -0.748 5.748 16 C -0.217 4.217 17 H 0.063 0.937 18 C -0.063 4.063 19 N -0.983 5.983 20 Si 0.946 3.054 21 H -0.282 1.282 22 H -0.300 1.300 23 H -0.255 1.255 24 C -0.103 4.103 25 H 0.060 0.940 26 C -0.135 4.135 27 C 0.126 3.874 28 C -0.115 4.115 29 C -0.127 4.127 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.362 0.638 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.058 0.942 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.131 0.869 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 -24.922 8.701 30.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.136 4.136 8 C 0.305 3.695 9 O -0.459 6.459 10 N -0.341 5.341 11 C -0.009 4.009 12 C -0.186 4.186 13 C 0.073 3.927 14 H 0.066 0.934 15 N -0.390 5.390 16 C -0.348 4.348 17 H 0.080 0.920 18 C -0.255 4.255 19 N -0.635 5.635 20 Si 0.775 3.225 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.180 1.180 24 C -0.123 4.123 25 H 0.079 0.921 26 C -0.193 4.193 27 C 0.003 3.997 28 C -0.133 4.133 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.195 0.805 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.135 -25.264 8.815 30.261 hybrid contribution 0.809 0.523 -1.372 1.676 sum -13.326 -24.740 7.443 29.070 Atomic orbital electron populations 1.21720 0.93973 1.02384 1.01946 1.20582 0.96731 0.91471 1.03375 1.20183 0.98783 0.97186 0.93068 1.21203 1.00361 0.94780 0.98399 1.21185 0.99266 0.95484 0.97794 1.19482 0.99588 0.95463 0.93805 1.20767 0.90116 0.95505 1.07247 1.21042 0.90911 0.82591 0.74948 1.90681 1.71255 1.32279 1.51730 1.48255 1.06864 1.06484 1.72482 1.21839 0.97586 0.82490 0.98998 1.22386 0.97893 0.99853 0.98471 1.20427 0.92164 0.89285 0.90828 0.93355 1.42801 1.77259 1.02329 1.16642 1.19007 1.33168 0.82358 1.00229 0.91951 1.25379 1.02963 0.95555 1.01569 1.69859 1.55337 1.04243 1.34027 0.85540 0.77913 0.78327 0.80748 1.20872 1.22705 1.18016 1.21646 0.96489 0.95389 0.98739 0.92102 1.21642 0.94068 1.01467 1.02146 1.21531 0.79576 1.00544 0.98019 1.21205 0.98939 0.95390 0.97744 1.21231 1.00159 0.94821 0.98319 0.92964 0.91173 0.92720 0.90680 0.90402 0.85047 0.85931 0.86222 0.85333 0.86881 0.89865 0.91495 0.92644 0.80547 0.93582 0.91506 0.93775 0.92305 0.90284 0.89989 0.85135 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.80 16 2 C -0.08 -1.07 6.07 29.85 0.18 -0.89 16 3 C -0.09 -1.65 5.13 -19.86 -0.10 -1.75 16 4 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 5 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 6 C -0.08 -1.72 4.37 -19.86 -0.09 -1.80 16 7 C -0.10 -1.69 4.18 29.10 0.12 -1.57 16 8 C 0.52 12.81 7.69 87.66 0.67 13.49 16 9 O -0.58 -19.11 15.45 -3.04 -0.05 -19.16 16 10 N -0.61 -14.37 2.98 -819.79 -2.44 -16.81 16 11 C 0.11 2.31 6.31 86.22 0.54 2.86 16 12 C -0.15 -4.20 5.64 30.53 0.17 -4.03 16 13 C 0.18 6.21 2.19 45.01 0.10 6.31 16 14 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 15 N -0.75 -32.87 4.22 -322.83 -1.36 -34.23 16 16 C -0.22 -11.73 10.41 84.03 0.87 -10.85 16 17 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 18 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 19 N -0.98 -61.92 13.97 21.65 0.30 -61.62 16 20 Si 0.95 45.14 27.73 68.60 1.90 47.04 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 24 C -0.10 -3.01 2.46 -10.73 -0.03 -3.03 16 25 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 26 C -0.14 -3.93 9.02 71.98 0.65 -3.28 16 27 C 0.13 3.25 5.72 86.35 0.49 3.74 16 28 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 29 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 34 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.12 1.69 7.62 -2.39 -0.02 1.68 16 38 H 0.13 1.54 7.90 -2.39 -0.02 1.52 16 39 H 0.11 1.60 5.93 -2.39 -0.01 1.58 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.36 15.78 5.37 -92.70 -0.50 15.29 16 44 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.48 7.36 -2.39 -0.02 1.47 16 47 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 50 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 51 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -71.73 403.94 4.33 -67.40 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.34 Total: 30.87 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.64 Total: -13.49 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.50 Total: -112.66 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -71.73 4.33 -67.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036207585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.055 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds