Wall clock time and date at job start Tue Mar 31 2020 16:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46844 * 2 1 4 4 C 1.38234 * 119.99806 * 90.00380 * 3 2 1 5 5 C 1.38233 * 120.00166 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99706 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99882 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47256 * 53.26845 * 7 6 5 9 9 C 1.53001 * 109.47399 * 293.26691 * 7 6 5 10 10 C 1.50704 * 109.47311 * 173.26921 * 7 6 5 11 11 O 1.21275 * 120.00292 * 114.14823 * 10 7 6 12 12 N 1.34778 * 119.99804 * 294.14728 * 10 7 6 13 13 C 1.46500 * 120.00185 * 5.36962 * 12 10 7 14 14 C 1.46498 * 120.00325 * 185.37016 * 12 10 7 15 15 C 1.53493 * 114.21016 * 240.00370 * 14 12 10 16 16 N 1.47066 * 87.98698 * 220.14593 * 15 14 12 17 17 C 1.36932 * 136.05231 * 206.86111 * 16 15 14 18 18 H 1.07995 * 120.00842 * 359.97438 * 17 16 15 19 19 C 1.38821 * 119.99358 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99618 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47248 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46860 * 120.00113 * 21 19 17 24 24 H 1.48496 * 109.46902 * 239.99611 * 21 19 17 25 25 C 1.47066 * 87.88265 * 27.11756 * 16 15 14 26 26 C 1.38238 * 120.00014 * 0.24817 * 6 5 4 27 27 C 1.38230 * 120.00031 * 359.49596 * 26 6 5 28 28 H 1.08994 * 109.47310 * 299.99484 * 1 2 3 29 29 H 1.08999 * 109.47300 * 60.00330 * 1 2 3 30 30 H 1.09004 * 109.46593 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47243 * 240.00565 * 2 1 3 32 32 H 1.08993 * 109.47605 * 120.00306 * 2 1 3 33 33 H 1.08001 * 119.99665 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.00306 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47409 * 183.65238 * 8 7 6 36 36 H 1.08999 * 109.47286 * 303.65263 * 8 7 6 37 37 H 1.09002 * 109.47520 * 63.65188 * 8 7 6 38 38 H 1.09000 * 109.46736 * 300.00396 * 9 7 6 39 39 H 1.09004 * 109.46726 * 59.99887 * 9 7 6 40 40 H 1.08997 * 109.47655 * 179.97438 * 9 7 6 41 41 H 1.08997 * 109.47332 * 265.92152 * 13 12 10 42 42 H 1.09001 * 109.46902 * 25.91711 * 13 12 10 43 43 H 1.08996 * 109.47430 * 145.91159 * 13 12 10 44 44 H 1.09001 * 113.27673 * 13.06623 * 14 12 10 45 45 H 1.08998 * 113.47174 * 105.36146 * 15 14 12 46 46 H 1.09007 * 113.52160 * 334.93327 * 15 14 12 47 47 H 0.96998 * 120.00027 * 179.97438 * 20 19 17 48 48 H 1.08998 * 113.46449 * 87.66398 * 25 16 15 49 49 H 1.09003 * 113.46607 * 218.10183 * 25 16 15 50 50 H 1.08003 * 119.99675 * 179.73620 * 26 6 5 51 51 H 1.07998 * 119.99984 * 180.25110 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4564 5.4481 0.0002 8 6 4.7164 5.5436 0.8628 9 6 2.3771 6.3707 0.5701 10 6 3.7808 5.8664 -1.4109 11 8 3.1332 6.7394 -1.9487 12 7 4.7907 5.2702 -2.0751 13 6 5.4965 4.1372 -1.4715 14 6 5.1827 5.7551 -3.4008 15 6 5.0597 4.7075 -4.5159 16 7 6.3254 5.2180 -5.0639 17 6 6.9140 5.2731 -6.2991 18 1 6.4036 4.8657 -7.1592 19 6 8.1669 5.8526 -6.4456 20 7 8.7887 6.3496 -5.3974 21 14 8.9696 5.9284 -8.1307 22 1 8.0703 5.3070 -9.1358 23 1 9.2169 7.3459 -8.4978 24 1 10.2594 5.1933 -8.0980 25 6 6.6834 5.6374 -3.7005 26 6 2.7184 3.3776 -1.1971 27 6 2.2622 2.0727 -1.1971 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0823 1.5634 2.1324 34 1 2.9035 3.8848 2.1326 35 1 5.0427 6.5823 0.9157 36 1 4.4979 5.1799 1.8668 37 1 5.5065 4.9368 0.4205 38 1 1.4794 6.3026 -0.0445 39 1 2.1424 6.0682 1.5907 40 1 2.7405 7.3983 0.5705 41 1 6.3813 4.4979 -0.9472 42 1 4.8367 3.6323 -0.7659 43 1 5.7964 3.4382 -2.2523 44 1 4.7520 6.7251 -3.6494 45 1 4.2052 4.8707 -5.1726 46 1 5.1250 3.6803 -4.1570 47 1 9.6643 6.7542 -5.4998 48 1 7.1815 4.8582 -3.1235 49 1 7.2095 6.5913 -3.6639 50 1 2.8942 3.8882 -2.1323 51 1 2.0818 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044160905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:55 Heat of formation + Delta-G solvation = 55.719395 kcal Electronic energy + Delta-G solvation = -29440.654113 eV Core-core repulsion = 25728.331610 eV Total energy + Delta-G solvation = -3712.322503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11092 -39.17142 -37.91060 -35.85656 -34.38501 -33.27152 -32.00167 -31.03234 -28.93212 -28.02873 -27.22764 -26.53851 -24.81654 -24.60683 -23.87152 -22.72539 -21.87347 -20.86447 -19.16781 -18.53228 -17.36666 -16.82234 -16.27952 -16.00743 -15.44422 -15.09765 -14.85825 -14.76692 -14.14035 -14.11472 -13.89440 -13.81640 -13.80086 -13.33097 -13.18275 -12.74680 -12.61305 -12.58255 -12.30084 -12.16726 -11.92634 -11.76193 -11.67100 -11.57343 -11.51532 -11.41471 -11.32116 -10.98307 -10.97155 -10.92846 -10.77911 -10.72061 -10.16839 -10.07275 -9.46441 -9.34884 -8.99576 -8.85231 -8.56230 -8.07316 -6.93282 -5.81179 -3.14116 1.17440 1.30312 2.83539 3.26925 3.38150 3.43352 3.45591 3.59688 4.40426 4.44621 4.46994 4.64894 4.69962 4.88494 4.95956 5.00434 5.04808 5.11355 5.27887 5.29422 5.34434 5.38966 5.41621 5.42433 5.51137 5.53942 5.63132 5.66977 5.71832 5.74772 5.76050 5.78649 5.88543 5.90624 5.96541 5.97258 6.03900 6.13295 6.17674 6.24201 6.34142 6.43636 6.47825 6.50602 6.56921 6.79471 6.87565 7.15585 7.32410 7.49403 7.77367 7.92618 8.45781 8.99331 9.65624 10.57425 11.36454 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.003076 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.252700 B = 9099.869695 C =10159.883338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.073 4.073 7 C -0.041 4.041 8 C -0.157 4.157 9 C -0.121 4.121 10 C 0.523 3.477 11 O -0.541 6.541 12 N -0.592 5.592 13 C 0.063 3.937 14 C 0.086 3.914 15 C 0.106 3.894 16 N -0.603 5.603 17 C -0.217 4.217 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.150 3.850 26 C -0.108 4.108 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.042 0.958 46 H 0.034 0.966 47 H 0.254 0.746 48 H 0.030 0.970 49 H 0.074 0.926 50 H 0.128 0.872 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 -10.049 17.846 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.126 4.126 6 C -0.073 4.073 7 C -0.045 4.045 8 C -0.214 4.214 9 C -0.179 4.179 10 C 0.310 3.690 11 O -0.418 6.418 12 N -0.324 5.324 13 C -0.080 4.080 14 C -0.018 4.018 15 C -0.021 4.021 16 N -0.329 5.329 17 C -0.344 4.344 18 H 0.101 0.899 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.023 3.977 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.093 0.907 50 H 0.146 0.854 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.441 -9.497 17.270 23.856 hybrid contribution 0.714 -0.109 -0.892 1.147 sum -12.728 -9.607 16.378 22.859 Atomic orbital electron populations 1.21746 0.94796 1.01592 1.02261 1.20541 0.96123 0.92750 1.02826 1.19899 0.99158 0.96227 0.93202 1.20939 1.00433 0.94776 0.97408 1.20876 0.99746 0.94678 0.97260 1.19482 1.00033 0.94149 0.93631 1.19781 0.97664 0.93111 0.93913 1.22274 0.96293 1.03486 0.99355 1.21648 0.97660 0.98609 0.99949 1.20316 0.79824 0.81686 0.87150 1.90676 1.49953 1.32048 1.69087 1.47887 1.33497 1.32408 1.18638 1.22279 0.97269 0.89192 0.99263 1.23725 0.99449 0.99002 0.79582 1.22814 0.90919 0.95441 0.92935 1.45256 1.16880 1.67732 1.03004 1.18958 0.99265 1.33340 0.82849 0.89853 1.24822 0.97031 1.00856 0.97687 1.69833 1.15177 1.43647 1.27883 0.85998 0.79135 0.77426 0.82923 1.20369 1.21592 1.21683 1.22440 0.90399 0.99842 0.84995 1.21328 0.98233 0.95054 0.98030 1.21007 0.99695 0.94669 0.97658 0.92619 0.92493 0.92502 0.90995 0.91135 0.86207 0.85897 0.91660 0.91511 0.90193 0.91763 0.92140 0.91648 0.92280 0.89917 0.90808 0.86479 0.93967 0.94873 0.93599 0.95235 0.90735 0.85449 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.64 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.11 -1.02 8.75 -39.58 -0.35 -1.36 16 6 C -0.07 -0.83 3.12 -104.62 -0.33 -1.15 16 7 C -0.04 -0.51 0.59 -156.81 -0.09 -0.60 16 8 C -0.16 -1.62 7.99 37.16 0.30 -1.32 16 9 C -0.12 -1.40 7.66 37.16 0.28 -1.11 16 10 C 0.52 8.51 4.93 -10.98 -0.05 8.45 16 11 O -0.54 -10.75 15.52 5.56 0.09 -10.66 16 12 N -0.59 -9.68 2.44 -173.72 -0.42 -10.11 16 13 C 0.06 0.85 6.45 59.85 0.39 1.24 16 14 C 0.09 1.74 4.53 -67.82 -0.31 1.43 16 15 C 0.11 2.25 8.26 -8.52 -0.07 2.18 16 16 N -0.60 -15.65 3.78 -184.81 -0.70 -16.35 16 17 C -0.22 -6.13 10.75 -15.06 -0.16 -6.29 16 18 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.27 11.51 55.49 0.64 -26.63 16 21 Si 0.92 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.15 3.52 6.84 -8.52 -0.06 3.46 16 26 C -0.11 -1.35 7.16 -39.58 -0.28 -1.63 16 27 C -0.11 -1.22 9.70 -39.59 -0.38 -1.61 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.51 8.09 -51.92 -0.42 0.10 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.93 7.07 -52.49 -0.37 0.56 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.54 6.91 -51.93 -0.36 0.18 16 37 H 0.08 0.84 4.15 -51.93 -0.22 0.62 16 38 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 39 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.76 6.90 -51.93 -0.36 0.40 16 42 H 0.08 0.98 3.48 -51.93 -0.18 0.80 16 43 H 0.07 1.07 6.37 -51.93 -0.33 0.74 16 44 H 0.12 2.60 7.33 -51.93 -0.38 2.22 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.66 6.92 -51.93 -0.36 0.31 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 49 H 0.07 1.97 7.12 -51.93 -0.37 1.61 16 50 H 0.13 1.85 5.93 -52.48 -0.31 1.54 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -32.37 389.15 -9.67 -42.04 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.17 Total: 1.51 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.94 Total: -2.81 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.48 Total: -53.09 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.37 -9.67 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044160905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.755 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds