Wall clock time and date at job start Tue Mar 31 2020 16:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46844 * 2 1 4 4 C 1.38234 * 119.99806 * 90.00380 * 3 2 1 5 5 C 1.38233 * 120.00166 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99706 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99882 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47256 * 53.26845 * 7 6 5 9 9 C 1.53001 * 109.47399 * 293.26691 * 7 6 5 10 10 C 1.50704 * 109.47311 * 173.26921 * 7 6 5 11 11 O 1.21275 * 120.00292 * 114.14823 * 10 7 6 12 12 N 1.34778 * 119.99804 * 294.14728 * 10 7 6 13 13 C 1.46500 * 120.00185 * 5.36962 * 12 10 7 14 14 C 1.46498 * 120.00325 * 185.37016 * 12 10 7 15 15 C 1.53493 * 114.21016 * 240.00370 * 14 12 10 16 16 N 1.47066 * 87.98698 * 220.14593 * 15 14 12 17 17 C 1.36932 * 136.05231 * 206.86111 * 16 15 14 18 18 H 1.07995 * 120.00842 * 359.97438 * 17 16 15 19 19 C 1.38821 * 119.99358 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99618 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47248 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46860 * 120.00113 * 21 19 17 24 24 H 1.48496 * 109.46902 * 239.99611 * 21 19 17 25 25 C 1.47066 * 87.88265 * 27.11756 * 16 15 14 26 26 C 1.38238 * 120.00014 * 0.24817 * 6 5 4 27 27 C 1.38230 * 120.00031 * 359.49596 * 26 6 5 28 28 H 1.08994 * 109.47310 * 299.99484 * 1 2 3 29 29 H 1.08999 * 109.47300 * 60.00330 * 1 2 3 30 30 H 1.09004 * 109.46593 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47243 * 240.00565 * 2 1 3 32 32 H 1.08993 * 109.47605 * 120.00306 * 2 1 3 33 33 H 1.08001 * 119.99665 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.00306 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47409 * 183.65238 * 8 7 6 36 36 H 1.08999 * 109.47286 * 303.65263 * 8 7 6 37 37 H 1.09002 * 109.47520 * 63.65188 * 8 7 6 38 38 H 1.09000 * 109.46736 * 300.00396 * 9 7 6 39 39 H 1.09004 * 109.46726 * 59.99887 * 9 7 6 40 40 H 1.08997 * 109.47655 * 179.97438 * 9 7 6 41 41 H 1.08997 * 109.47332 * 265.92152 * 13 12 10 42 42 H 1.09001 * 109.46902 * 25.91711 * 13 12 10 43 43 H 1.08996 * 109.47430 * 145.91159 * 13 12 10 44 44 H 1.09001 * 113.27673 * 13.06623 * 14 12 10 45 45 H 1.08998 * 113.47174 * 105.36146 * 15 14 12 46 46 H 1.09007 * 113.52160 * 334.93327 * 15 14 12 47 47 H 0.96998 * 120.00027 * 179.97438 * 20 19 17 48 48 H 1.08998 * 113.46449 * 87.66398 * 25 16 15 49 49 H 1.09003 * 113.46607 * 218.10183 * 25 16 15 50 50 H 1.08003 * 119.99675 * 179.73620 * 26 6 5 51 51 H 1.07998 * 119.99984 * 180.25110 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1973 6 6 2.9542 4.0273 0.0001 7 6 3.4564 5.4481 0.0002 8 6 4.7164 5.5436 0.8628 9 6 2.3771 6.3707 0.5701 10 6 3.7808 5.8664 -1.4109 11 8 3.1332 6.7394 -1.9487 12 7 4.7907 5.2702 -2.0751 13 6 5.4965 4.1372 -1.4715 14 6 5.1827 5.7551 -3.4008 15 6 5.0597 4.7075 -4.5159 16 7 6.3254 5.2180 -5.0639 17 6 6.9140 5.2731 -6.2991 18 1 6.4036 4.8657 -7.1592 19 6 8.1669 5.8526 -6.4456 20 7 8.7887 6.3496 -5.3974 21 14 8.9696 5.9284 -8.1307 22 1 8.0703 5.3070 -9.1358 23 1 9.2169 7.3459 -8.4978 24 1 10.2594 5.1933 -8.0980 25 6 6.6834 5.6374 -3.7005 26 6 2.7184 3.3776 -1.1971 27 6 2.2622 2.0727 -1.1971 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0823 1.5634 2.1324 34 1 2.9035 3.8848 2.1326 35 1 5.0427 6.5823 0.9157 36 1 4.4979 5.1799 1.8668 37 1 5.5065 4.9368 0.4205 38 1 1.4794 6.3026 -0.0445 39 1 2.1424 6.0682 1.5907 40 1 2.7405 7.3983 0.5705 41 1 6.3813 4.4979 -0.9472 42 1 4.8367 3.6323 -0.7659 43 1 5.7964 3.4382 -2.2523 44 1 4.7520 6.7251 -3.6494 45 1 4.2052 4.8707 -5.1726 46 1 5.1250 3.6803 -4.1570 47 1 9.6643 6.7542 -5.4998 48 1 7.1815 4.8582 -3.1235 49 1 7.2095 6.5913 -3.6639 50 1 2.8942 3.8882 -2.1323 51 1 2.0818 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044160905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:54 Heat of formation + Delta-G solvation = 38.398853 kcal Electronic energy + Delta-G solvation = -29441.405188 eV Core-core repulsion = 25728.331610 eV Total energy + Delta-G solvation = -3713.073578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.25557 -40.36847 -39.42076 -36.89829 -35.83690 -34.12502 -33.90233 -31.83448 -29.80746 -29.64320 -28.48812 -27.63558 -26.47942 -26.07547 -24.88515 -23.90765 -22.87454 -21.83566 -20.63635 -19.88657 -18.88686 -18.35704 -17.71472 -17.03975 -16.92093 -16.25262 -16.06567 -15.89683 -15.73449 -15.27429 -15.01045 -14.78112 -14.51364 -14.49123 -14.09378 -14.02153 -13.85220 -13.73135 -13.39843 -13.31821 -13.20763 -13.12056 -13.07063 -12.86013 -12.76590 -12.67360 -12.54550 -12.27112 -12.11659 -12.10629 -11.97707 -11.84972 -11.64763 -11.50123 -11.41206 -10.94899 -10.67826 -9.77735 -9.56707 -9.34472 -9.01381 -7.97116 -5.32212 0.39113 0.52587 1.43793 1.45719 1.53876 1.56093 1.91497 2.45365 2.82270 3.23909 3.33343 3.47409 3.58010 3.72805 3.95299 3.98762 4.04767 4.06055 4.17040 4.21443 4.28059 4.37883 4.42569 4.54726 4.56578 4.59744 4.64412 4.68529 4.73521 4.75671 4.77008 4.81071 4.88144 4.93327 4.96426 5.07554 5.13112 5.13505 5.16519 5.18044 5.23629 5.25858 5.34009 5.40368 5.42443 5.56629 5.62750 5.67721 5.77886 5.83749 6.12032 6.42495 6.83548 7.12118 7.51562 8.50016 9.20669 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.003076 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.252700 B = 9099.869695 C =10159.883338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.083 4.083 7 C -0.032 4.032 8 C -0.156 4.156 9 C -0.119 4.119 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.590 5.590 13 C 0.064 3.936 14 C 0.111 3.889 15 C 0.114 3.886 16 N -0.634 5.634 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.157 3.843 26 C -0.129 4.129 27 C -0.124 4.124 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.097 0.903 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -12.191 20.354 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.083 4.083 7 C -0.035 4.035 8 C -0.213 4.213 9 C -0.177 4.177 10 C 0.309 3.691 11 O -0.465 6.465 12 N -0.321 5.321 13 C -0.078 4.078 14 C 0.006 3.994 15 C -0.013 4.013 16 N -0.360 5.360 17 C -0.361 4.361 18 H 0.105 0.895 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.812 3.188 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.214 1.214 25 C 0.031 3.969 26 C -0.147 4.147 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.115 0.885 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.149 -11.675 19.804 26.994 hybrid contribution 0.822 0.509 -1.624 1.890 sum -13.326 -11.166 18.180 25.155 Atomic orbital electron populations 1.21735 0.94425 1.02304 1.01795 1.20590 0.96345 0.91550 1.03677 1.20171 0.98256 0.97155 0.92861 1.21301 0.99000 0.94564 0.98233 1.21138 0.98530 0.94856 0.97233 1.19410 1.01214 0.93480 0.94191 1.19765 0.98968 0.93969 0.90829 1.22311 0.94970 1.03367 1.00627 1.21664 0.96458 0.98090 1.01438 1.21196 0.78655 0.80602 0.88688 1.90649 1.51315 1.34052 1.70444 1.47816 1.33942 1.33090 1.17225 1.22445 0.97959 0.88047 0.99302 1.22991 0.96822 0.97811 0.81784 1.22865 0.89109 0.96457 0.92853 1.45552 1.18556 1.68645 1.03245 1.19340 0.99640 1.32981 0.84090 0.89520 1.25707 0.97690 1.00861 1.01499 1.70015 1.15286 1.44667 1.29942 0.84920 0.78048 0.77065 0.78721 1.18875 1.21820 1.21449 1.22318 0.91981 0.98103 0.84538 1.21162 1.00288 0.95885 0.97373 1.21085 1.00154 0.94288 0.98654 0.92330 0.93715 0.91253 0.91058 0.89424 0.83308 0.83102 0.92254 0.88088 0.90402 0.93741 0.88641 0.92619 0.91141 0.87573 0.91721 0.88947 0.93973 0.92782 0.94018 0.94421 0.94371 0.88485 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.08 -1.01 6.06 29.85 0.18 -0.83 16 3 C -0.08 -1.37 5.13 -19.86 -0.10 -1.47 16 4 C -0.11 -1.54 9.70 22.27 0.22 -1.32 16 5 C -0.10 -1.48 8.75 22.27 0.19 -1.28 16 6 C -0.08 -1.71 3.12 -19.87 -0.06 -1.78 16 7 C -0.03 -0.75 0.59 -53.67 -0.03 -0.78 16 8 C -0.16 -2.81 7.99 71.98 0.58 -2.23 16 9 C -0.12 -2.59 7.66 71.98 0.55 -2.04 16 10 C 0.52 17.25 4.93 87.66 0.43 17.68 16 11 O -0.58 -24.39 15.52 -3.01 -0.05 -24.44 16 12 N -0.59 -19.71 2.44 -821.92 -2.01 -21.72 16 13 C 0.06 1.70 6.45 127.77 0.82 2.52 16 14 C 0.11 4.69 4.53 45.46 0.21 4.90 16 15 C 0.11 4.95 8.26 83.17 0.69 5.64 16 16 N -0.63 -33.91 3.78 -738.61 -2.79 -36.70 16 17 C -0.23 -13.43 10.75 84.04 0.90 -12.53 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 19 C -0.06 -3.72 5.50 84.87 0.47 -3.25 16 20 N -0.95 -58.07 11.51 21.65 0.25 -57.82 16 21 Si 0.99 46.27 29.55 68.60 2.03 48.30 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 C 0.16 7.69 6.84 83.17 0.57 8.26 16 26 C -0.13 -3.14 7.16 22.27 0.16 -2.98 16 27 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 32 H 0.09 0.77 8.08 -2.39 -0.02 0.76 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.15 1.39 7.07 -2.91 -0.02 1.37 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.15 6.91 -2.39 -0.02 1.13 16 37 H 0.08 1.44 4.15 -2.39 -0.01 1.43 16 38 H 0.04 1.13 8.04 -2.39 -0.02 1.11 16 39 H 0.09 1.38 7.82 -2.38 -0.02 1.36 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.73 6.90 -2.39 -0.02 1.71 16 42 H 0.11 2.37 3.48 -2.39 -0.01 2.36 16 43 H 0.06 1.85 6.37 -2.39 -0.02 1.83 16 44 H 0.09 4.38 7.33 -2.39 -0.02 4.36 16 45 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 2.16 6.92 -2.38 -0.02 2.15 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.04 1.78 6.68 -2.39 -0.02 1.76 16 49 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 50 H 0.10 2.93 5.93 -2.91 -0.02 2.92 16 51 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -73.23 389.15 5.04 -68.19 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.92 Total: 18.97 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.70 Total: 5.23 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -4.55 Total: -116.24 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -73.23 5.04 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044160905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.587 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds