Wall clock time and date at job start Tue Mar 31 2020 16:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47289 * 2 1 4 4 C 1.38258 * 120.00017 * 265.23415 * 3 2 1 5 5 C 1.38217 * 119.99852 * 180.27705 * 4 3 2 6 6 C 1.38261 * 119.99970 * 359.74310 * 5 4 3 7 7 C 1.38218 * 120.00090 * 359.97438 * 6 5 4 8 8 C 1.38221 * 119.99903 * 85.00188 * 3 2 1 9 9 C 1.50702 * 120.00067 * 359.97438 * 8 3 2 10 10 C 1.50690 * 109.46998 * 84.72856 * 9 8 3 11 11 O 1.21287 * 120.00406 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.62811 * 354.22087 * 12 10 9 14 14 C 1.53199 * 108.77229 * 126.41729 * 13 12 10 15 15 C 1.53043 * 109.31055 * 54.63603 * 14 13 12 16 16 H 1.09004 * 109.45655 * 178.62324 * 15 14 13 17 17 N 1.46496 * 109.46061 * 58.65779 * 15 14 13 18 18 C 1.36939 * 120.00684 * 84.96752 * 17 15 14 19 19 H 1.08002 * 119.99601 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00557 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99841 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00126 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47385 * 60.00500 * 22 20 18 24 24 H 1.48500 * 109.47339 * 300.00155 * 22 20 18 25 25 H 1.48505 * 109.47225 * 180.02562 * 22 20 18 26 26 C 1.53034 * 109.52701 * 298.64047 * 15 14 13 27 27 C 1.46929 * 120.63079 * 174.24919 * 12 10 9 28 28 H 1.09000 * 109.58431 * 113.79763 * 27 12 10 29 29 C 1.52999 * 109.58701 * 353.51320 * 27 12 10 30 30 H 1.08999 * 109.46925 * 299.99694 * 1 2 3 31 31 H 1.08992 * 109.47175 * 59.99917 * 1 2 3 32 32 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46847 * 239.99771 * 2 1 3 34 34 H 1.09004 * 109.46850 * 120.00094 * 2 1 3 35 35 H 1.07990 * 120.00081 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.00273 * 179.72573 * 5 4 3 37 37 H 1.08000 * 120.00051 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.00106 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46609 * 324.72874 * 9 8 3 40 40 H 1.08997 * 109.46772 * 204.72788 * 9 8 3 41 41 H 1.08996 * 109.58888 * 6.63051 * 13 12 10 42 42 H 1.09005 * 109.70582 * 246.27095 * 13 12 10 43 43 H 1.08997 * 109.49752 * 294.68577 * 14 13 12 44 44 H 1.09003 * 109.51843 * 174.60306 * 14 13 12 45 45 H 0.97005 * 119.99687 * 264.96929 * 17 15 14 46 46 H 0.97006 * 119.99900 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.49847 * 181.31268 * 26 15 14 48 48 H 1.09009 * 109.49669 * 301.40556 * 26 15 14 49 49 H 1.08997 * 109.47090 * 65.75814 * 29 27 12 50 50 H 1.09000 * 109.46913 * 185.75400 * 29 27 12 51 51 H 1.08999 * 109.46756 * 305.75098 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3566 2.0393 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9598 4.0253 0.0006 7 6 2.6302 3.4088 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4348 2.4926 10 6 2.9820 0.6319 2.9844 11 8 4.0107 0.6075 2.3423 12 7 2.8909 -0.0600 4.1375 13 6 1.6997 0.0582 4.9893 14 6 1.1486 -1.3447 5.2636 15 6 2.2586 -2.2181 5.8529 16 1 1.8626 -3.2098 6.0718 17 7 2.7560 -1.6077 7.0883 18 6 2.1170 -1.8465 8.2757 19 1 1.2465 -2.4853 8.3015 20 6 2.5886 -1.2685 9.4463 21 7 3.6498 -0.4905 9.4149 22 14 1.7173 -1.5950 11.0660 23 1 1.7352 -3.0518 11.3529 24 1 0.3114 -1.1255 10.9753 25 1 2.4124 -0.8665 12.1576 26 6 3.4046 -2.3375 4.8458 27 6 3.9813 -0.9463 4.5668 28 1 4.4376 -0.5511 5.4744 29 6 5.0346 -1.0367 3.4607 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2503 1.5042 -2.1252 36 1 3.0803 3.8223 -2.1243 37 1 3.3245 5.0419 0.0011 38 1 2.7376 3.9436 2.1251 39 1 0.9537 0.7728 2.3362 40 1 1.5466 2.1912 3.2334 41 1 0.9433 0.6545 4.4790 42 1 1.9675 0.5362 5.9315 43 1 0.7951 -1.7854 4.3315 44 1 0.3224 -1.2794 5.9716 45 1 3.5380 -1.0342 7.0652 46 1 4.1020 -0.3207 8.5737 47 1 4.1846 -2.9786 5.2566 48 1 3.0298 -2.7689 3.9176 49 1 5.5065 -0.0632 3.3280 50 1 5.7900 -1.7720 3.7376 51 1 4.5574 -1.3393 2.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044650055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:02 Heat of formation + Delta-G solvation = 2.367469 kcal Electronic energy + Delta-G solvation = -29636.004143 eV Core-core repulsion = 25921.368127 eV Total energy + Delta-G solvation = -3714.636016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65101 -39.41255 -37.43167 -34.47543 -34.39228 -33.30969 -32.08999 -31.87325 -29.61589 -28.90237 -27.68596 -26.81397 -24.15021 -23.89404 -23.43155 -22.55680 -21.63426 -20.70532 -19.84354 -18.40472 -17.28101 -16.65748 -16.55581 -16.23500 -15.76066 -15.24565 -15.06574 -14.56128 -14.14503 -14.03511 -13.81642 -13.68109 -13.56146 -13.49906 -13.27315 -13.07005 -12.93875 -12.86728 -12.22596 -12.12598 -11.94908 -11.90163 -11.86884 -11.56447 -11.37942 -11.28068 -10.91436 -10.85592 -10.77933 -10.69668 -10.57400 -10.36913 -10.19630 -9.98826 -9.20060 -9.00333 -8.97429 -8.78966 -8.57074 -8.20289 -7.08390 -6.13353 -3.14126 1.27720 1.34795 2.81805 3.20118 3.48834 3.51758 3.69555 3.73318 4.54963 4.63662 4.64192 4.76744 4.80725 4.86717 5.02247 5.12895 5.15241 5.22046 5.22601 5.32038 5.33286 5.40422 5.42943 5.47384 5.53789 5.56632 5.63375 5.66056 5.74655 5.79020 5.79713 5.90999 5.93507 6.01547 6.03970 6.09388 6.11418 6.20826 6.34880 6.40280 6.41922 6.44103 6.53979 6.60137 6.64967 6.67565 6.73957 6.94900 7.00566 7.71515 7.77250 8.42887 8.71390 9.18019 10.04506 10.19762 11.34317 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.002936 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.297686 B = 9534.771723 C = 9643.048973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.057 4.057 9 C -0.109 4.109 10 C 0.515 3.485 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.114 3.886 14 C -0.148 4.148 15 C 0.180 3.820 16 H 0.051 0.949 17 N -0.733 5.733 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.078 2.922 23 H -0.296 1.296 24 H -0.296 1.296 25 H -0.286 1.286 26 C -0.134 4.134 27 C 0.147 3.853 28 H 0.073 0.927 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.367 0.633 46 H 0.254 0.746 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.040 0.960 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 4.169 -20.366 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.057 4.057 9 C -0.149 4.149 10 C 0.303 3.697 11 O -0.411 6.411 12 N -0.334 5.334 13 C -0.009 4.009 14 C -0.189 4.189 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.377 5.377 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.909 3.091 23 H -0.223 1.223 24 H -0.223 1.223 25 H -0.211 1.211 26 C -0.173 4.173 27 C 0.044 3.956 28 H 0.091 0.909 29 C -0.191 4.191 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.201 0.799 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.059 0.941 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.260 4.327 -19.010 20.194 hybrid contribution 0.060 -0.161 -1.483 1.493 sum -5.201 4.166 -20.493 21.549 Atomic orbital electron populations 1.21769 0.94726 1.01830 1.02101 1.20555 0.95931 0.92920 1.03085 1.19653 0.98421 0.95663 0.92589 1.20949 1.00367 0.95207 0.97247 1.21071 1.00027 0.94882 0.97924 1.21049 1.00814 0.99904 0.92554 1.20991 0.98570 0.94554 0.98173 1.19163 0.99461 0.93907 0.93187 1.20836 0.98229 1.00162 0.95676 1.20343 0.89043 0.79741 0.80541 1.90742 1.29994 1.63096 1.57243 1.48195 1.19612 1.44232 1.21352 1.21713 0.85869 0.98436 0.94856 1.22492 1.00626 0.95947 0.99881 1.20113 0.91459 0.95220 0.86266 0.93104 1.42518 1.34233 1.58130 1.02813 1.20022 1.10796 1.28275 0.87047 0.91806 1.25729 0.99099 0.98104 1.01265 1.70899 1.20510 1.39244 1.28144 0.83259 0.74625 0.75460 0.75724 1.22333 1.22317 1.21104 1.22252 0.99653 0.96077 0.99325 1.21191 0.86881 0.89686 0.97798 0.90944 1.22178 0.97328 1.02327 0.97255 0.92485 0.92548 0.92278 0.91134 0.90948 0.86376 0.86388 0.86292 0.86269 0.87992 0.88348 0.91096 0.90100 0.93203 0.90784 0.79900 0.93486 0.90902 0.92011 0.90597 0.94108 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.72 37.16 0.36 -0.90 16 2 C -0.09 -0.91 5.38 -27.88 -0.15 -1.06 16 3 C -0.06 -0.74 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.29 9.68 -39.58 -0.38 -1.67 16 5 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 7 C -0.10 -1.25 9.68 -39.58 -0.38 -1.63 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.31 3.52 -29.04 -0.10 -1.41 16 10 C 0.52 7.76 6.68 -10.99 -0.07 7.68 16 11 O -0.53 -9.31 11.60 5.55 0.06 -9.24 16 12 N -0.60 -9.32 2.97 -165.24 -0.49 -9.81 16 13 C 0.11 1.74 6.09 -3.71 -0.02 1.72 16 14 C -0.15 -2.38 5.78 -26.61 -0.15 -2.54 16 15 C 0.18 3.36 3.10 -67.89 -0.21 3.15 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 N -0.73 -17.09 4.31 -53.39 -0.23 -17.32 16 18 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16 19 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 20 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 21 N -0.94 -28.37 13.70 55.49 0.76 -27.61 16 22 Si 1.08 25.24 29.92 -169.99 -5.09 20.15 16 23 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.13 -2.20 5.08 -26.63 -0.14 -2.33 16 27 C 0.15 2.45 3.19 -67.61 -0.22 2.24 16 28 H 0.07 1.37 6.64 -51.93 -0.34 1.02 16 29 C -0.13 -2.13 7.62 37.16 0.28 -1.85 16 30 H 0.06 0.49 6.79 -51.93 -0.35 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.10 1.07 5.42 -51.93 -0.28 0.79 16 40 H 0.10 1.05 7.62 -51.93 -0.40 0.66 16 41 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 42 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.37 8.96 4.90 -40.82 -0.20 8.76 16 46 H 0.25 7.55 6.78 -40.82 -0.28 7.27 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 49 H 0.08 1.32 6.55 -51.93 -0.34 0.98 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.06 0.99 6.95 -51.93 -0.36 0.63 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -31.20 389.24 -10.63 -41.83 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.29 Total: 10.86 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -3.22 Total: -14.72 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.04 Total: -54.74 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.06 Total: -9.24 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.20 -10.63 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.194 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds