Wall clock time and date at job start Tue Mar 31 2020 16:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47289 * 2 1 4 4 C 1.38258 * 120.00017 * 265.23415 * 3 2 1 5 5 C 1.38217 * 119.99852 * 180.27705 * 4 3 2 6 6 C 1.38261 * 119.99970 * 359.74310 * 5 4 3 7 7 C 1.38218 * 120.00090 * 359.97438 * 6 5 4 8 8 C 1.38221 * 119.99903 * 85.00188 * 3 2 1 9 9 C 1.50702 * 120.00067 * 359.97438 * 8 3 2 10 10 C 1.50690 * 109.46998 * 84.72856 * 9 8 3 11 11 O 1.21287 * 120.00406 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.62811 * 354.22087 * 12 10 9 14 14 C 1.53199 * 108.77229 * 126.41729 * 13 12 10 15 15 C 1.53043 * 109.31055 * 54.63603 * 14 13 12 16 16 H 1.09004 * 109.45655 * 178.62324 * 15 14 13 17 17 N 1.46496 * 109.46061 * 58.65779 * 15 14 13 18 18 C 1.36939 * 120.00684 * 84.96752 * 17 15 14 19 19 H 1.08002 * 119.99601 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00557 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99841 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00126 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47385 * 60.00500 * 22 20 18 24 24 H 1.48500 * 109.47339 * 300.00155 * 22 20 18 25 25 H 1.48505 * 109.47225 * 180.02562 * 22 20 18 26 26 C 1.53034 * 109.52701 * 298.64047 * 15 14 13 27 27 C 1.46929 * 120.63079 * 174.24919 * 12 10 9 28 28 H 1.09000 * 109.58431 * 113.79763 * 27 12 10 29 29 C 1.52999 * 109.58701 * 353.51320 * 27 12 10 30 30 H 1.08999 * 109.46925 * 299.99694 * 1 2 3 31 31 H 1.08992 * 109.47175 * 59.99917 * 1 2 3 32 32 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46847 * 239.99771 * 2 1 3 34 34 H 1.09004 * 109.46850 * 120.00094 * 2 1 3 35 35 H 1.07990 * 120.00081 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.00273 * 179.72573 * 5 4 3 37 37 H 1.08000 * 120.00051 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.00106 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46609 * 324.72874 * 9 8 3 40 40 H 1.08997 * 109.46772 * 204.72788 * 9 8 3 41 41 H 1.08996 * 109.58888 * 6.63051 * 13 12 10 42 42 H 1.09005 * 109.70582 * 246.27095 * 13 12 10 43 43 H 1.08997 * 109.49752 * 294.68577 * 14 13 12 44 44 H 1.09003 * 109.51843 * 174.60306 * 14 13 12 45 45 H 0.97005 * 119.99687 * 264.96929 * 17 15 14 46 46 H 0.97006 * 119.99900 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.49847 * 181.31268 * 26 15 14 48 48 H 1.09009 * 109.49669 * 301.40556 * 26 15 14 49 49 H 1.08997 * 109.47090 * 65.75814 * 29 27 12 50 50 H 1.09000 * 109.46913 * 185.75400 * 29 27 12 51 51 H 1.08999 * 109.46756 * 305.75098 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3566 2.0393 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9598 4.0253 0.0006 7 6 2.6302 3.4088 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4348 2.4926 10 6 2.9820 0.6319 2.9844 11 8 4.0107 0.6075 2.3423 12 7 2.8909 -0.0600 4.1375 13 6 1.6997 0.0582 4.9893 14 6 1.1486 -1.3447 5.2636 15 6 2.2586 -2.2181 5.8529 16 1 1.8626 -3.2098 6.0718 17 7 2.7560 -1.6077 7.0883 18 6 2.1170 -1.8465 8.2757 19 1 1.2465 -2.4853 8.3015 20 6 2.5886 -1.2685 9.4463 21 7 3.6498 -0.4905 9.4149 22 14 1.7173 -1.5950 11.0660 23 1 1.7352 -3.0518 11.3529 24 1 0.3114 -1.1255 10.9753 25 1 2.4124 -0.8665 12.1576 26 6 3.4046 -2.3375 4.8458 27 6 3.9813 -0.9463 4.5668 28 1 4.4376 -0.5511 5.4744 29 6 5.0346 -1.0367 3.4607 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2503 1.5042 -2.1252 36 1 3.0803 3.8223 -2.1243 37 1 3.3245 5.0419 0.0011 38 1 2.7376 3.9436 2.1251 39 1 0.9537 0.7728 2.3362 40 1 1.5466 2.1912 3.2334 41 1 0.9433 0.6545 4.4790 42 1 1.9675 0.5362 5.9315 43 1 0.7951 -1.7854 4.3315 44 1 0.3224 -1.2794 5.9716 45 1 3.5380 -1.0342 7.0652 46 1 4.1020 -0.3207 8.5737 47 1 4.1846 -2.9786 5.2566 48 1 3.0298 -2.7689 3.9176 49 1 5.5065 -0.0632 3.3280 50 1 5.7900 -1.7720 3.7376 51 1 4.5574 -1.3393 2.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044650055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:01 Heat of formation + Delta-G solvation = -13.111573 kcal Electronic energy + Delta-G solvation = -29636.675364 eV Core-core repulsion = 25921.368127 eV Total energy + Delta-G solvation = -3715.307237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82339 -40.37915 -38.79970 -36.10971 -35.28328 -34.43566 -33.77979 -32.94073 -30.65016 -30.35704 -28.80516 -28.06070 -25.58682 -25.32086 -24.71579 -23.62783 -22.68774 -21.71739 -21.04678 -19.83284 -19.15810 -17.86363 -17.46247 -17.34017 -16.80690 -16.79091 -16.09309 -15.92066 -15.64809 -15.41771 -15.11950 -14.82771 -14.69246 -14.57732 -14.38832 -14.30183 -13.92267 -13.80851 -13.45577 -13.40072 -13.18771 -12.94915 -12.83653 -12.71815 -12.64577 -12.60049 -12.25057 -12.14603 -12.04753 -11.95056 -11.82410 -11.67193 -11.65201 -11.55340 -11.15865 -10.88718 -10.16386 -9.66957 -9.55818 -9.45031 -9.06186 -8.32972 -5.26834 0.43621 0.52174 1.60192 1.63361 1.69392 1.85244 1.99556 2.74241 2.86970 3.44760 3.60300 3.66417 3.73261 3.85647 3.91387 3.94253 4.00448 4.02595 4.09648 4.21365 4.28418 4.30319 4.32906 4.42351 4.47046 4.51459 4.57113 4.63951 4.68309 4.72551 4.74929 4.77485 4.83184 4.99128 5.01692 5.04662 5.08395 5.15728 5.17920 5.20436 5.23669 5.26577 5.34036 5.39896 5.60174 5.63333 5.66839 5.68129 5.76529 6.15193 6.49315 6.53649 7.14030 7.21712 8.04994 8.17316 9.18239 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.002936 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.297686 B = 9534.771723 C = 9643.048973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.076 4.076 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.123 4.123 8 C -0.076 4.076 9 C -0.102 4.102 10 C 0.515 3.485 11 O -0.558 6.558 12 N -0.601 5.601 13 C 0.120 3.880 14 C -0.139 4.139 15 C 0.171 3.829 16 H 0.045 0.955 17 N -0.743 5.743 18 C -0.319 4.319 19 H 0.068 0.932 20 C -0.107 4.107 21 N -0.979 5.979 22 Si 1.124 2.876 23 H -0.281 1.281 24 H -0.276 1.276 25 H -0.299 1.299 26 C -0.122 4.122 27 C 0.148 3.852 28 H 0.042 0.958 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.358 0.642 46 H 0.241 0.759 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.058 0.942 50 H 0.050 0.950 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 3.840 -22.288 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.141 4.141 8 C -0.076 4.076 9 C -0.141 4.141 10 C 0.305 3.695 11 O -0.437 6.437 12 N -0.334 5.334 13 C -0.003 4.003 14 C -0.179 4.179 15 C 0.063 3.937 16 H 0.063 0.937 17 N -0.386 5.386 18 C -0.450 4.450 19 H 0.086 0.914 20 C -0.297 4.297 21 N -0.628 5.628 22 Si 0.950 3.050 23 H -0.207 1.207 24 H -0.202 1.202 25 H -0.225 1.225 26 C -0.161 4.161 27 C 0.045 3.955 28 H 0.060 0.940 29 C -0.175 4.175 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.191 0.809 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.177 3.975 -20.985 22.532 hybrid contribution 0.675 -0.066 -1.015 1.221 sum -6.502 3.909 -22.001 23.272 Atomic orbital electron populations 1.21743 0.93279 1.02552 1.02408 1.20545 0.97139 0.92045 1.02520 1.19903 0.98551 0.96312 0.92804 1.21261 1.00041 0.95653 0.97761 1.21421 0.99125 0.94838 0.98789 1.21348 1.00577 1.00893 0.92430 1.21212 0.99088 0.94861 0.98958 1.19285 1.00543 0.94311 0.93504 1.20826 0.97113 1.00234 0.95940 1.20878 0.89622 0.79201 0.79818 1.90732 1.31310 1.63829 1.57865 1.48203 1.19268 1.44280 1.21668 1.21643 0.86457 0.98314 0.93838 1.22343 0.98967 0.95802 1.00810 1.20370 0.93044 0.95035 0.85257 0.93725 1.42685 1.33979 1.58295 1.03666 1.20344 1.10121 1.26474 0.88105 0.91414 1.27030 0.99506 0.98431 1.04781 1.71008 1.22396 1.41840 1.27512 0.82653 0.74444 0.75940 0.71953 1.20724 1.20241 1.22537 1.22121 0.98633 0.95808 0.99498 1.21052 0.87583 0.90021 0.96859 0.93991 1.21997 0.97135 1.01607 0.96789 0.92481 0.91948 0.91318 0.90570 0.92592 0.84549 0.83994 0.84496 0.85985 0.86190 0.87103 0.87447 0.93680 0.90038 0.91743 0.80882 0.94865 0.91595 0.89651 0.92327 0.93119 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.72 71.98 0.70 -1.38 16 2 C -0.09 -1.61 5.38 29.85 0.16 -1.45 16 3 C -0.08 -1.65 5.13 -19.87 -0.10 -1.75 16 4 C -0.13 -2.52 9.68 22.27 0.22 -2.31 16 5 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 6 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 7 C -0.12 -2.82 9.68 22.27 0.22 -2.60 16 8 C -0.08 -1.78 4.37 -19.86 -0.09 -1.87 16 9 C -0.10 -2.26 3.52 29.10 0.10 -2.16 16 10 C 0.52 15.02 6.68 87.65 0.59 15.61 16 11 O -0.56 -19.32 11.60 -3.05 -0.04 -19.35 16 12 N -0.60 -18.25 2.97 -795.07 -2.36 -20.61 16 13 C 0.12 3.53 6.09 86.37 0.53 4.06 16 14 C -0.14 -4.20 5.78 30.68 0.18 -4.02 16 15 C 0.17 6.29 3.10 45.02 0.14 6.42 16 16 H 0.04 1.70 8.08 -2.38 -0.02 1.68 16 17 N -0.74 -35.19 4.31 -322.82 -1.39 -36.58 16 18 C -0.32 -17.04 9.93 84.03 0.83 -16.21 16 19 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 20 C -0.11 -6.03 5.50 84.86 0.47 -5.56 16 21 N -0.98 -60.64 13.70 21.65 0.30 -60.34 16 22 Si 1.12 51.02 29.92 68.60 2.05 53.08 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 C -0.12 -3.89 5.08 30.66 0.16 -3.74 16 27 C 0.15 4.97 3.19 44.96 0.14 5.12 16 28 H 0.04 1.67 6.64 -2.39 -0.02 1.65 16 29 C -0.12 -3.76 7.62 71.98 0.55 -3.21 16 30 H 0.06 0.83 6.79 -2.39 -0.02 0.81 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 34 H 0.06 1.24 6.40 -2.38 -0.02 1.22 16 35 H 0.14 2.05 8.06 -2.92 -0.02 2.03 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.12 2.20 5.42 -2.39 -0.01 2.19 16 40 H 0.11 2.16 7.62 -2.39 -0.02 2.15 16 41 H 0.11 2.37 5.93 -2.39 -0.01 2.35 16 42 H 0.04 1.67 7.74 -2.38 -0.02 1.65 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.36 18.21 4.90 -92.70 -0.45 17.76 16 46 H 0.24 14.98 6.78 -92.70 -0.63 14.36 16 47 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.06 2.07 6.55 -2.39 -0.02 2.06 16 50 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.06 1.92 6.95 -2.39 -0.02 1.90 16 Total: -1.00 -68.53 389.24 4.39 -64.13 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.60 Total: 39.25 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 5.23 Total: -19.58 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -3.46 Total: -117.53 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.08 kcal Total: -68.53 4.39 -64.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.021 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds