Wall clock time and date at job start Tue Mar 31 2020 16:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47067 * 2 1 4 4 C 1.38253 * 119.99874 * 265.02375 * 3 2 1 5 5 C 1.38215 * 120.00030 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.38225 * 119.99686 * 359.74638 * 6 5 4 8 8 C 1.38217 * 120.00066 * 85.00052 * 3 2 1 9 9 C 1.50702 * 119.99913 * 0.02562 * 8 3 2 10 10 C 1.50702 * 109.46928 * 85.00057 * 9 8 3 11 11 O 1.21276 * 120.00312 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99713 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63176 * 5.06670 * 12 10 9 14 14 C 1.53189 * 108.77328 * 126.38927 * 13 12 10 15 15 C 1.53043 * 109.31088 * 54.63802 * 14 13 12 16 16 H 1.08997 * 109.45045 * 58.64545 * 15 14 13 17 17 N 1.46509 * 109.45522 * 178.61154 * 15 14 13 18 18 C 1.36931 * 119.99686 * 275.06073 * 17 15 14 19 19 H 1.07996 * 120.00287 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47221 * 59.99813 * 22 20 18 24 24 H 1.48497 * 109.47059 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46685 * 299.99907 * 22 20 18 26 26 C 1.53043 * 109.53781 * 298.63089 * 15 14 13 27 27 C 1.46928 * 120.62928 * 185.06629 * 12 10 9 28 28 H 1.09001 * 109.58186 * 113.82237 * 27 12 10 29 29 C 1.52997 * 109.70289 * 353.46591 * 27 12 10 30 30 H 1.09001 * 109.47141 * 59.99906 * 1 2 3 31 31 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47293 * 300.00002 * 1 2 3 33 33 H 1.08990 * 109.47221 * 240.00032 * 2 1 3 34 34 H 1.09008 * 109.47188 * 119.99688 * 2 1 3 35 35 H 1.08000 * 120.00350 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99997 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.00159 * 180.02562 * 6 5 4 38 38 H 1.07998 * 119.99946 * 180.27335 * 7 6 5 39 39 H 1.08999 * 109.47189 * 325.00210 * 9 8 3 40 40 H 1.08990 * 109.47062 * 205.00074 * 9 8 3 41 41 H 1.09006 * 109.58434 * 6.60127 * 13 12 10 42 42 H 1.08999 * 109.58772 * 246.17944 * 13 12 10 43 43 H 1.09000 * 109.50069 * 294.68486 * 14 13 12 44 44 H 1.09003 * 109.49330 * 174.58946 * 14 13 12 45 45 H 0.96996 * 119.99791 * 95.06948 * 17 15 14 46 46 H 0.97000 * 120.00173 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.49486 * 301.41350 * 26 15 14 48 48 H 1.08995 * 109.52254 * 181.33829 * 26 15 14 49 49 H 1.08998 * 109.47114 * 304.25233 * 29 27 12 50 50 H 1.09004 * 109.47565 * 64.24997 * 29 27 12 51 51 H 1.08998 * 109.47006 * 184.24981 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0379 -1.1928 5 6 2.8208 3.3412 -1.1929 6 6 2.9524 4.0280 -0.0002 7 6 2.6186 3.4130 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8065 1.4345 2.4926 10 6 2.9862 0.6379 2.9874 11 8 4.0159 0.6179 2.3470 12 7 2.8969 -0.0524 4.1415 13 6 1.6241 -0.1288 4.8716 14 6 1.2872 -1.6020 5.1223 15 6 2.4620 -2.2756 5.8352 16 1 2.6595 -1.7607 6.7754 17 7 2.1300 -3.6765 6.1063 18 6 1.4253 -4.0075 7.2327 19 1 1.1139 -3.2358 7.9211 20 6 1.1111 -5.3350 7.4898 21 7 1.4910 -6.2755 6.6511 22 14 0.1491 -5.7865 9.0261 23 1 -1.1694 -5.1037 9.0031 24 1 -0.0559 -7.2566 9.0675 25 1 0.9076 -5.3579 10.2287 26 6 3.7061 -2.2092 4.9464 27 6 4.0704 -0.7429 4.6935 28 1 4.3634 -0.2721 5.6320 29 6 5.2294 -0.6668 3.6977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2575 1.5017 -2.1246 36 1 3.0769 3.8234 -2.1247 37 1 3.3116 5.0465 -0.0003 38 1 2.7171 3.9509 2.1231 39 1 0.9583 0.7682 2.3356 40 1 1.5426 2.1904 3.2322 41 1 0.8340 0.3308 4.2776 42 1 1.7176 0.3921 5.8245 43 1 1.1049 -2.1007 4.1704 44 1 0.3957 -1.6702 5.7459 45 1 2.4094 -4.3696 5.4878 46 1 1.2712 -7.2031 6.8306 47 1 3.5010 -2.7022 3.9961 48 1 4.5365 -2.7098 5.4441 49 1 4.9118 -1.0755 2.7385 50 1 5.5294 0.3731 3.5680 51 1 6.0729 -1.2436 4.0771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044650056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:05 Heat of formation + Delta-G solvation = -0.123879 kcal Electronic energy + Delta-G solvation = -29149.122963 eV Core-core repulsion = 25434.378914 eV Total energy + Delta-G solvation = -3714.744049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.69036 -39.41297 -37.29443 -34.50053 -34.47202 -33.34847 -31.97551 -31.90056 -29.63862 -29.30973 -27.67860 -26.84580 -24.30372 -23.95758 -22.91756 -22.57367 -21.56384 -20.59940 -20.04765 -18.81562 -17.15176 -16.70485 -16.58594 -16.24459 -15.79692 -15.11571 -14.95564 -14.82069 -14.11855 -13.94521 -13.77619 -13.69419 -13.54702 -13.46121 -13.20355 -13.08148 -12.93119 -12.65760 -12.23432 -12.16489 -12.04386 -11.89136 -11.85714 -11.57056 -11.41743 -11.33340 -10.91449 -10.90627 -10.84332 -10.78618 -10.74406 -10.44644 -10.28412 -9.85806 -9.71823 -9.05118 -8.92933 -8.82782 -8.61371 -8.36588 -7.00264 -5.79614 -3.08946 1.24526 1.31837 2.73309 3.09455 3.40964 3.45621 3.46794 3.69380 4.51408 4.54975 4.62605 4.68786 4.78949 4.84331 5.01616 5.07241 5.10064 5.18039 5.24663 5.27883 5.32559 5.37053 5.38596 5.47359 5.49357 5.51747 5.56549 5.62846 5.76448 5.83319 5.84651 5.89932 5.93123 6.00911 6.03215 6.13476 6.14930 6.26639 6.36595 6.38708 6.40502 6.45906 6.49892 6.54744 6.58314 6.76979 6.90808 6.92238 7.04066 7.58561 7.65468 8.33715 8.38586 9.49700 10.07355 10.42060 11.42845 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002707 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.259740 B =10340.413967 C =10843.196818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.058 4.058 9 C -0.110 4.110 10 C 0.516 3.484 11 O -0.529 6.529 12 N -0.604 5.604 13 C 0.106 3.894 14 C -0.151 4.151 15 C 0.179 3.821 16 H 0.047 0.953 17 N -0.724 5.724 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.134 4.134 27 C 0.147 3.853 28 H 0.069 0.931 29 C -0.132 4.132 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 19.831 -13.023 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.150 4.150 10 C 0.304 3.696 11 O -0.406 6.406 12 N -0.338 5.338 13 C -0.017 4.017 14 C -0.192 4.192 15 C 0.069 3.931 16 H 0.065 0.935 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.173 4.173 27 C 0.044 3.956 28 H 0.087 0.913 29 C -0.190 4.190 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.217 0.783 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.978 19.761 -13.174 23.770 hybrid contribution -0.603 -0.576 0.762 1.130 sum 0.374 19.186 -12.412 22.854 Atomic orbital electron populations 1.21769 0.94621 1.02067 1.01978 1.20575 0.96031 0.92762 1.03286 1.19689 0.98100 0.95764 0.92582 1.20974 1.00183 0.95178 0.97348 1.21077 0.99987 0.94842 0.97940 1.21036 1.00922 0.99873 0.92590 1.20952 0.98879 0.94476 0.98075 1.19145 0.99671 0.93877 0.93185 1.20850 0.98297 1.00069 0.95737 1.20371 0.89238 0.79541 0.80439 1.90763 1.30420 1.63260 1.56199 1.48231 1.11540 1.50873 1.23205 1.21872 0.84408 0.99035 0.96376 1.22673 1.01889 0.92783 1.01846 1.20155 0.90580 0.87449 0.94908 0.93521 1.42424 1.66157 1.01216 1.26591 1.19178 1.27041 0.91862 0.99082 0.91245 1.24750 1.01580 0.95831 0.98727 1.69651 1.51186 0.99966 1.37243 0.86286 0.79871 0.77193 0.82932 1.21282 1.21712 1.21267 1.22290 0.99627 0.94559 1.00869 1.21291 0.85093 0.92548 0.96634 0.91342 1.22176 0.95607 1.02376 0.98793 0.92585 0.92055 0.92546 0.91031 0.90847 0.86302 0.86382 0.86344 0.86381 0.87849 0.88361 0.90544 0.91491 0.92191 0.90638 0.78265 0.93429 0.91845 0.90741 0.91143 0.91532 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.72 37.16 0.36 -0.97 16 2 C -0.09 -0.96 5.38 -27.88 -0.15 -1.11 16 3 C -0.06 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.24 9.68 -39.58 -0.38 -1.63 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 7 C -0.11 -1.13 9.68 -39.58 -0.38 -1.51 16 8 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 9 C -0.11 -1.16 3.56 -29.03 -0.10 -1.27 16 10 C 0.52 6.98 6.81 -10.98 -0.07 6.91 16 11 O -0.53 -8.59 11.45 5.56 0.06 -8.52 16 12 N -0.60 -8.11 2.97 -165.22 -0.49 -8.61 16 13 C 0.11 1.30 6.33 -3.71 -0.02 1.28 16 14 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 15 C 0.18 3.36 2.73 -67.88 -0.19 3.18 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -17.55 5.12 -53.38 -0.27 -17.82 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 27 C 0.15 2.13 3.48 -67.60 -0.24 1.89 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 C -0.13 -1.93 7.60 37.16 0.28 -1.65 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.49 6.80 -51.93 -0.35 0.14 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 34 H 0.07 0.91 6.42 -51.92 -0.33 0.58 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.10 1.00 4.96 -51.93 -0.26 0.75 16 40 H 0.10 0.84 8.02 -51.93 -0.42 0.43 16 41 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.07 1.15 6.74 -51.93 -0.35 0.80 16 50 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 51 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -31.20 395.23 -10.82 -42.03 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -8.57 Total: 9.55 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.21 Total: -12.45 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.04 Total: -53.50 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.20 -10.82 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.903 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds