Wall clock time and date at job start Tue Mar 31 2020 16:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47067 * 2 1 4 4 C 1.38253 * 119.99874 * 265.02375 * 3 2 1 5 5 C 1.38215 * 120.00030 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.38225 * 119.99686 * 359.74638 * 6 5 4 8 8 C 1.38217 * 120.00066 * 85.00052 * 3 2 1 9 9 C 1.50702 * 119.99913 * 0.02562 * 8 3 2 10 10 C 1.50702 * 109.46928 * 85.00057 * 9 8 3 11 11 O 1.21276 * 120.00312 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99713 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63176 * 5.06670 * 12 10 9 14 14 C 1.53189 * 108.77328 * 126.38927 * 13 12 10 15 15 C 1.53043 * 109.31088 * 54.63802 * 14 13 12 16 16 H 1.08997 * 109.45045 * 58.64545 * 15 14 13 17 17 N 1.46509 * 109.45522 * 178.61154 * 15 14 13 18 18 C 1.36931 * 119.99686 * 275.06073 * 17 15 14 19 19 H 1.07996 * 120.00287 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47221 * 59.99813 * 22 20 18 24 24 H 1.48497 * 109.47059 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46685 * 299.99907 * 22 20 18 26 26 C 1.53043 * 109.53781 * 298.63089 * 15 14 13 27 27 C 1.46928 * 120.62928 * 185.06629 * 12 10 9 28 28 H 1.09001 * 109.58186 * 113.82237 * 27 12 10 29 29 C 1.52997 * 109.70289 * 353.46591 * 27 12 10 30 30 H 1.09001 * 109.47141 * 59.99906 * 1 2 3 31 31 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47293 * 300.00002 * 1 2 3 33 33 H 1.08990 * 109.47221 * 240.00032 * 2 1 3 34 34 H 1.09008 * 109.47188 * 119.99688 * 2 1 3 35 35 H 1.08000 * 120.00350 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99997 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.00159 * 180.02562 * 6 5 4 38 38 H 1.07998 * 119.99946 * 180.27335 * 7 6 5 39 39 H 1.08999 * 109.47189 * 325.00210 * 9 8 3 40 40 H 1.08990 * 109.47062 * 205.00074 * 9 8 3 41 41 H 1.09006 * 109.58434 * 6.60127 * 13 12 10 42 42 H 1.08999 * 109.58772 * 246.17944 * 13 12 10 43 43 H 1.09000 * 109.50069 * 294.68486 * 14 13 12 44 44 H 1.09003 * 109.49330 * 174.58946 * 14 13 12 45 45 H 0.96996 * 119.99791 * 95.06948 * 17 15 14 46 46 H 0.97000 * 120.00173 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.49486 * 301.41350 * 26 15 14 48 48 H 1.08995 * 109.52254 * 181.33829 * 26 15 14 49 49 H 1.08998 * 109.47114 * 304.25233 * 29 27 12 50 50 H 1.09004 * 109.47565 * 64.24997 * 29 27 12 51 51 H 1.08998 * 109.47006 * 184.24981 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0379 -1.1928 5 6 2.8208 3.3412 -1.1929 6 6 2.9524 4.0280 -0.0002 7 6 2.6186 3.4130 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8065 1.4345 2.4926 10 6 2.9862 0.6379 2.9874 11 8 4.0159 0.6179 2.3470 12 7 2.8969 -0.0524 4.1415 13 6 1.6241 -0.1288 4.8716 14 6 1.2872 -1.6020 5.1223 15 6 2.4620 -2.2756 5.8352 16 1 2.6595 -1.7607 6.7754 17 7 2.1300 -3.6765 6.1063 18 6 1.4253 -4.0075 7.2327 19 1 1.1139 -3.2358 7.9211 20 6 1.1111 -5.3350 7.4898 21 7 1.4910 -6.2755 6.6511 22 14 0.1491 -5.7865 9.0261 23 1 -1.1694 -5.1037 9.0031 24 1 -0.0559 -7.2566 9.0675 25 1 0.9076 -5.3579 10.2287 26 6 3.7061 -2.2092 4.9464 27 6 4.0704 -0.7429 4.6935 28 1 4.3634 -0.2721 5.6320 29 6 5.2294 -0.6668 3.6977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2575 1.5017 -2.1246 36 1 3.0769 3.8234 -2.1247 37 1 3.3116 5.0465 -0.0003 38 1 2.7171 3.9509 2.1231 39 1 0.9583 0.7682 2.3356 40 1 1.5426 2.1904 3.2322 41 1 0.8340 0.3308 4.2776 42 1 1.7176 0.3921 5.8245 43 1 1.1049 -2.1007 4.1704 44 1 0.3957 -1.6702 5.7459 45 1 2.4094 -4.3696 5.4878 46 1 1.2712 -7.2031 6.8306 47 1 3.5010 -2.7022 3.9961 48 1 4.5365 -2.7098 5.4441 49 1 4.9118 -1.0755 2.7385 50 1 5.5294 0.3731 3.5680 51 1 6.0729 -1.2436 4.0771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044650056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:04 Heat of formation + Delta-G solvation = -16.085953 kcal Electronic energy + Delta-G solvation = -29149.815130 eV Core-core repulsion = 25434.378914 eV Total energy + Delta-G solvation = -3715.436216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72576 -40.29905 -38.58518 -36.13259 -35.27612 -34.37419 -33.69791 -32.90089 -31.00769 -30.35012 -28.74252 -28.01012 -25.99961 -24.75697 -24.38329 -23.54713 -22.54836 -21.66679 -21.26732 -19.96181 -19.07974 -17.76989 -17.41011 -17.15616 -16.80243 -16.69772 -16.05763 -15.90579 -15.47973 -15.43118 -15.04079 -14.71226 -14.67477 -14.54148 -14.30590 -14.08087 -13.86695 -13.76610 -13.43027 -13.35641 -13.07584 -12.94441 -12.88056 -12.80165 -12.64163 -12.61181 -12.54151 -12.21649 -12.14450 -12.02188 -11.92298 -11.69101 -11.66777 -11.53477 -11.33427 -10.86925 -10.10116 -9.63814 -9.52431 -9.42441 -8.99799 -7.91954 -5.20745 0.46822 0.55171 1.48750 1.51315 1.57253 1.69700 2.05363 2.57747 2.90311 3.41138 3.65072 3.71570 3.75129 3.87310 3.97202 4.04263 4.06270 4.12826 4.14983 4.28647 4.31934 4.35834 4.36865 4.48613 4.53942 4.59692 4.63943 4.65962 4.72113 4.72878 4.77461 4.81486 4.85978 5.02567 5.03848 5.07882 5.08487 5.16171 5.18010 5.25820 5.28744 5.37991 5.43530 5.51734 5.56509 5.62791 5.66318 5.73892 5.79532 6.17980 6.29361 6.52808 7.28247 7.35329 8.11333 8.34352 9.31595 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.002707 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.259740 B =10340.413967 C =10843.196818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.078 4.078 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.117 4.117 8 C -0.076 4.076 9 C -0.103 4.103 10 C 0.515 3.485 11 O -0.559 6.559 12 N -0.606 5.606 13 C 0.114 3.886 14 C -0.140 4.140 15 C 0.174 3.826 16 H 0.049 0.951 17 N -0.739 5.739 18 C -0.234 4.234 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.278 1.278 26 C -0.123 4.123 27 C 0.152 3.848 28 H 0.084 0.916 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.062 0.938 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 22.584 -12.675 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.135 4.135 8 C -0.076 4.076 9 C -0.143 4.143 10 C 0.304 3.696 11 O -0.438 6.438 12 N -0.340 5.340 13 C -0.009 4.009 14 C -0.181 4.181 15 C 0.066 3.934 16 H 0.067 0.933 17 N -0.377 5.377 18 C -0.366 4.366 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.204 1.204 26 C -0.162 4.162 27 C 0.049 3.951 28 H 0.102 0.898 29 C -0.177 4.177 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.137 22.584 -12.821 25.970 hybrid contribution -0.271 -1.361 0.574 1.502 sum -0.133 21.222 -12.247 24.503 Atomic orbital electron populations 1.21739 0.93366 1.02265 1.02602 1.20527 0.97118 0.92551 1.02179 1.19864 0.98766 0.95964 0.93232 1.21228 1.00318 0.95849 0.97641 1.21405 0.99258 0.94623 0.99035 1.21376 1.00419 1.00938 0.92378 1.21232 0.98705 0.94431 0.99127 1.19313 1.00449 0.94446 0.93401 1.20859 0.96912 1.00377 0.96114 1.20880 0.89715 0.79228 0.79745 1.90754 1.31946 1.64274 1.56851 1.48280 1.11517 1.50723 1.23461 1.21916 0.84701 0.96271 0.97976 1.22445 1.00038 0.95298 1.00353 1.20408 0.92421 0.84893 0.95711 0.93341 1.42663 1.66063 1.03211 1.25806 1.19595 1.25553 0.92019 0.99425 0.90231 1.25557 1.03595 0.96056 1.01867 1.69822 1.53383 0.99861 1.39331 0.85245 0.78897 0.76189 0.79652 1.20176 1.22687 1.20436 1.22139 0.98403 0.96268 0.99373 1.21196 0.85598 0.91011 0.97323 0.89810 1.22008 0.95910 1.02000 0.97758 0.91803 0.92038 0.92051 0.91131 0.92935 0.85178 0.84221 0.84197 0.84961 0.86978 0.85684 0.87336 0.89454 0.93716 0.91427 0.79967 0.94215 0.93483 0.91553 0.93256 0.91892 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.72 71.98 0.70 -1.73 16 2 C -0.09 -1.82 5.38 29.85 0.16 -1.66 16 3 C -0.08 -1.71 5.13 -19.86 -0.10 -1.82 16 4 C -0.13 -2.62 9.68 22.27 0.22 -2.40 16 5 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 6 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 7 C -0.12 -2.26 9.68 22.27 0.22 -2.04 16 8 C -0.08 -1.61 4.37 -19.86 -0.09 -1.70 16 9 C -0.10 -1.95 3.56 29.10 0.10 -1.85 16 10 C 0.51 13.14 6.81 87.66 0.60 13.74 16 11 O -0.56 -17.85 11.45 -3.02 -0.03 -17.89 16 12 N -0.61 -15.16 2.97 -795.03 -2.36 -17.52 16 13 C 0.11 2.46 6.33 86.36 0.55 3.01 16 14 C -0.14 -4.35 5.66 30.67 0.17 -4.18 16 15 C 0.17 6.44 2.73 45.02 0.12 6.57 16 16 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 17 N -0.74 -36.28 5.12 -322.79 -1.65 -37.93 16 18 C -0.23 -12.56 9.93 84.04 0.83 -11.73 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 22 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 C -0.12 -4.08 4.84 30.67 0.15 -3.93 16 27 C 0.15 4.22 3.48 44.97 0.16 4.38 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 C -0.12 -3.44 7.60 71.98 0.55 -2.90 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 0.97 6.80 -2.38 -0.02 0.96 16 33 H 0.07 1.44 8.05 -2.39 -0.02 1.42 16 34 H 0.05 1.31 6.42 -2.38 -0.02 1.30 16 35 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.11 1.91 4.96 -2.39 -0.01 1.90 16 40 H 0.13 1.67 8.02 -2.39 -0.02 1.65 16 41 H 0.11 1.71 5.96 -2.38 -0.01 1.70 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.05 1.63 6.74 -2.39 -0.02 1.61 16 50 H 0.06 1.87 6.77 -2.38 -0.02 1.86 16 51 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.41 395.23 3.69 -64.72 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.19 Total: 36.77 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.25 Total: -16.33 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -3.73 Total: -114.61 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.03 Total: -17.89 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.41 3.69 -64.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.631 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds