Wall clock time and date at job start Tue Mar 31 2020 16:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47185 * 2 1 4 4 C 1.38254 * 120.00073 * 265.02432 * 3 2 1 5 5 C 1.38211 * 120.00155 * 179.97438 * 4 3 2 6 6 C 1.38268 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38206 * 119.99896 * 359.74807 * 6 5 4 8 8 C 1.38209 * 119.99788 * 84.99609 * 3 2 1 9 9 C 1.50700 * 120.00166 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47118 * 84.99506 * 9 8 3 11 11 O 1.21282 * 120.00225 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99957 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63330 * 0.03130 * 12 10 9 14 14 C 1.53189 * 108.78171 * 126.36075 * 13 12 10 15 15 C 1.53043 * 109.31044 * 54.63907 * 14 13 12 16 16 H 1.09000 * 109.45135 * 58.64073 * 15 14 13 17 17 N 1.46500 * 109.46237 * 178.61480 * 15 14 13 18 18 C 1.36936 * 119.99734 * 275.06683 * 17 15 14 19 19 H 1.07994 * 120.00229 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99498 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00456 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99532 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47351 * 90.00210 * 22 20 18 24 24 H 1.48498 * 109.46952 * 209.99822 * 22 20 18 25 25 H 1.48500 * 109.47391 * 329.99802 * 22 20 18 26 26 C 1.53046 * 109.53424 * 298.63451 * 15 14 13 27 27 C 1.46934 * 120.63279 * 179.97438 * 12 10 9 28 28 H 1.09000 * 109.70029 * 353.49498 * 27 12 10 29 29 C 1.52997 * 109.58618 * 113.84590 * 27 12 10 30 30 H 1.09000 * 109.46791 * 59.99849 * 1 2 3 31 31 H 1.08996 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47048 * 300.00147 * 1 2 3 33 33 H 1.08997 * 109.47048 * 239.99853 * 2 1 3 34 34 H 1.09000 * 109.46791 * 120.00151 * 2 1 3 35 35 H 1.08003 * 120.00010 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00263 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.99728 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.00219 * 180.27633 * 7 6 5 39 39 H 1.08990 * 109.47228 * 324.99729 * 9 8 3 40 40 H 1.09004 * 109.47374 * 204.99488 * 9 8 3 41 41 H 1.09004 * 109.58826 * 6.57281 * 13 12 10 42 42 H 1.09004 * 109.58246 * 246.15335 * 13 12 10 43 43 H 1.08995 * 109.49796 * 294.68499 * 14 13 12 44 44 H 1.09001 * 109.52554 * 174.59724 * 14 13 12 45 45 H 0.97003 * 119.99679 * 95.05987 * 17 15 14 46 46 H 0.96997 * 120.00240 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.49892 * 301.41592 * 26 15 14 48 48 H 1.09000 * 109.49638 * 181.31542 * 26 15 14 49 49 H 1.09002 * 109.47153 * 179.29114 * 29 27 12 50 50 H 1.09001 * 109.46832 * 59.29304 * 29 27 12 51 51 H 1.09004 * 109.47261 * 299.29286 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9525 4.0279 0.0000 7 6 2.6188 3.4129 1.1918 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9859 0.6377 2.9873 11 8 4.0161 0.6184 2.3475 12 7 2.8965 -0.0526 4.1415 13 6 1.6556 -0.0386 4.9279 14 6 1.2196 -1.4841 5.1870 15 6 2.3707 -2.2500 5.8431 16 1 2.6486 -1.7589 6.7757 17 7 1.9462 -3.6240 6.1226 18 6 1.2694 -3.9098 7.2782 19 1 1.0490 -3.1224 7.9837 20 6 0.8667 -5.2117 7.5427 21 7 1.1348 -6.1712 6.6827 22 14 -0.0572 -5.6014 9.1188 23 1 -1.5168 -5.4613 8.8846 24 1 0.2454 -6.9933 9.5386 25 1 0.3655 -4.6595 10.1862 26 6 3.5753 -2.2706 4.8992 27 6 4.0378 -0.8345 4.6366 28 1 4.8325 -0.8373 3.8906 29 6 4.5570 -0.2172 5.9367 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2576 1.5016 -2.1246 36 1 3.0771 3.8234 -2.1246 37 1 3.3117 5.0464 -0.0001 38 1 2.7173 3.9508 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5425 2.1904 3.2322 41 1 0.8768 0.4839 4.3724 42 1 1.8308 0.4662 5.8780 43 1 0.9577 -1.9600 4.2421 44 1 0.3542 -1.4903 5.8498 45 1 2.1444 -4.3313 5.4889 46 1 0.8530 -7.0808 6.8674 47 1 3.2912 -2.7391 3.9569 48 1 4.3868 -2.8362 5.3572 49 1 5.3954 -0.8059 6.3089 50 1 3.7594 -0.2107 6.6796 51 1 4.8859 0.8047 5.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044650057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:08 Heat of formation + Delta-G solvation = -14.690415 kcal Electronic energy + Delta-G solvation = -29060.208371 eV Core-core repulsion = 25344.832670 eV Total energy + Delta-G solvation = -3715.375701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58348 -39.39729 -37.48301 -34.53331 -34.43670 -33.10660 -32.03618 -31.78218 -29.63370 -29.35373 -27.65224 -27.25290 -24.23487 -23.94492 -22.98731 -22.56510 -21.60815 -20.84385 -19.99791 -18.25668 -17.26138 -16.98114 -16.57686 -16.21205 -15.59905 -15.17961 -14.94691 -14.76588 -14.05902 -13.98619 -13.82086 -13.65100 -13.53065 -13.48960 -13.21239 -13.09976 -12.97332 -12.74994 -12.56294 -12.17627 -11.98366 -11.88258 -11.79435 -11.63716 -11.39491 -11.27527 -10.95266 -10.90711 -10.87363 -10.78489 -10.75202 -10.45947 -10.22544 -9.79163 -9.67312 -9.62548 -8.93421 -8.87194 -8.65195 -8.46125 -7.00268 -5.80144 -3.09333 1.24640 1.32233 2.72682 3.08876 3.40118 3.45434 3.47303 3.69699 4.50983 4.54755 4.63074 4.67609 4.79077 4.84611 5.02304 5.06813 5.09965 5.17984 5.24550 5.26397 5.29009 5.32826 5.38838 5.46444 5.48267 5.52053 5.57663 5.61667 5.75280 5.77363 5.81480 5.85467 5.89993 5.92323 6.01423 6.07152 6.14286 6.17787 6.29149 6.37430 6.38605 6.40754 6.45996 6.53316 6.58019 6.65085 6.89571 6.92513 7.03129 7.56306 7.65538 8.29606 8.38109 9.49308 10.07138 10.41614 11.42394 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002730 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.917783 B =10253.930637 C =10919.505192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.107 4.107 10 C 0.517 3.483 11 O -0.540 6.540 12 N -0.602 5.602 13 C 0.105 3.895 14 C -0.151 4.151 15 C 0.179 3.821 16 H 0.051 0.949 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.133 4.133 27 C 0.142 3.858 28 H 0.094 0.906 29 C -0.160 4.160 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 19.516 -12.297 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.060 4.060 9 C -0.147 4.147 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.192 4.192 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.364 5.364 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.172 4.172 27 C 0.038 3.962 28 H 0.112 0.888 29 C -0.218 4.218 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.708 19.462 -12.443 23.163 hybrid contribution -0.581 -0.536 0.730 1.076 sum 1.127 18.926 -11.713 22.286 Atomic orbital electron populations 1.21768 0.94576 1.02090 1.01992 1.20580 0.96065 0.92745 1.03296 1.19694 0.98082 0.95779 0.92593 1.20976 1.00180 0.95184 0.97344 1.21081 0.99962 0.94838 0.97947 1.21036 1.00922 0.99888 0.92582 1.20955 0.98852 0.94466 0.98107 1.19154 0.99742 0.93914 0.93194 1.20791 0.98066 1.00069 0.95730 1.20396 0.89222 0.79511 0.80348 1.90694 1.31273 1.63480 1.56233 1.48257 1.14582 1.48314 1.22388 1.21866 0.85195 0.99174 0.95591 1.22677 1.01547 0.93135 1.01886 1.20186 0.90428 0.87488 0.94971 0.93146 1.42440 1.67507 1.03081 1.23398 1.19215 1.27991 0.93041 0.96775 0.91211 1.24747 1.01743 0.95918 0.98513 1.69659 1.51700 1.00491 1.36173 0.86219 0.79686 0.77381 0.83068 1.21746 1.21797 1.20774 1.22202 0.99753 0.94542 1.00697 1.21151 0.88295 0.90548 0.96176 0.88781 1.22135 1.01639 1.00527 0.97492 0.92580 0.92034 0.92522 0.90999 0.90869 0.86266 0.86350 0.86311 0.86352 0.87690 0.88254 0.90578 0.91440 0.92203 0.90673 0.78299 0.93489 0.91934 0.90643 0.91408 0.91685 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.72 37.16 0.36 -0.99 16 2 C -0.09 -0.98 5.38 -27.88 -0.15 -1.13 16 3 C -0.06 -0.72 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -1.27 9.68 -39.59 -0.38 -1.65 16 5 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 6 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 7 C -0.11 -1.16 9.68 -39.58 -0.38 -1.54 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.16 3.51 -29.04 -0.10 -1.27 16 10 C 0.52 7.26 6.90 -10.99 -0.08 7.19 16 11 O -0.54 -9.45 15.45 5.56 0.09 -9.36 16 12 N -0.60 -8.15 2.68 -165.25 -0.44 -8.59 16 13 C 0.11 1.29 5.92 -3.71 -0.02 1.27 16 14 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 15 C 0.18 3.31 2.52 -67.88 -0.17 3.14 16 16 H 0.05 0.95 6.44 -51.93 -0.33 0.61 16 17 N -0.72 -17.39 5.12 -53.38 -0.27 -17.66 16 18 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.13 -2.18 5.02 -26.63 -0.13 -2.32 16 27 C 0.14 2.04 3.20 -67.62 -0.22 1.82 16 28 H 0.09 1.46 7.01 -51.93 -0.36 1.10 16 29 C -0.16 -2.04 9.02 37.16 0.34 -1.71 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 6.80 -51.93 -0.35 0.15 16 33 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.07 0.93 6.42 -51.93 -0.33 0.59 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.11 1.04 5.17 -51.93 -0.27 0.77 16 40 H 0.10 0.86 7.85 -51.93 -0.41 0.46 16 41 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 42 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.84 5.72 -51.93 -0.30 0.54 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -31.77 396.62 -10.49 -42.26 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.41 Total: 9.87 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -3.13 Total: -12.40 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.01 Total: -53.21 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.77 -10.49 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.570 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds