Wall clock time and date at job start Tue Mar 31 2020 16:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47185 * 2 1 4 4 C 1.38254 * 120.00073 * 265.02432 * 3 2 1 5 5 C 1.38211 * 120.00155 * 179.97438 * 4 3 2 6 6 C 1.38268 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38206 * 119.99896 * 359.74807 * 6 5 4 8 8 C 1.38209 * 119.99788 * 84.99609 * 3 2 1 9 9 C 1.50700 * 120.00166 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47118 * 84.99506 * 9 8 3 11 11 O 1.21282 * 120.00225 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99957 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63330 * 0.03130 * 12 10 9 14 14 C 1.53189 * 108.78171 * 126.36075 * 13 12 10 15 15 C 1.53043 * 109.31044 * 54.63907 * 14 13 12 16 16 H 1.09000 * 109.45135 * 58.64073 * 15 14 13 17 17 N 1.46500 * 109.46237 * 178.61480 * 15 14 13 18 18 C 1.36936 * 119.99734 * 275.06683 * 17 15 14 19 19 H 1.07994 * 120.00229 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99498 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00456 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99532 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47351 * 90.00210 * 22 20 18 24 24 H 1.48498 * 109.46952 * 209.99822 * 22 20 18 25 25 H 1.48500 * 109.47391 * 329.99802 * 22 20 18 26 26 C 1.53046 * 109.53424 * 298.63451 * 15 14 13 27 27 C 1.46934 * 120.63279 * 179.97438 * 12 10 9 28 28 H 1.09000 * 109.70029 * 353.49498 * 27 12 10 29 29 C 1.52997 * 109.58618 * 113.84590 * 27 12 10 30 30 H 1.09000 * 109.46791 * 59.99849 * 1 2 3 31 31 H 1.08996 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47048 * 300.00147 * 1 2 3 33 33 H 1.08997 * 109.47048 * 239.99853 * 2 1 3 34 34 H 1.09000 * 109.46791 * 120.00151 * 2 1 3 35 35 H 1.08003 * 120.00010 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00263 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.99728 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.00219 * 180.27633 * 7 6 5 39 39 H 1.08990 * 109.47228 * 324.99729 * 9 8 3 40 40 H 1.09004 * 109.47374 * 204.99488 * 9 8 3 41 41 H 1.09004 * 109.58826 * 6.57281 * 13 12 10 42 42 H 1.09004 * 109.58246 * 246.15335 * 13 12 10 43 43 H 1.08995 * 109.49796 * 294.68499 * 14 13 12 44 44 H 1.09001 * 109.52554 * 174.59724 * 14 13 12 45 45 H 0.97003 * 119.99679 * 95.05987 * 17 15 14 46 46 H 0.96997 * 120.00240 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.49892 * 301.41592 * 26 15 14 48 48 H 1.09000 * 109.49638 * 181.31542 * 26 15 14 49 49 H 1.09002 * 109.47153 * 179.29114 * 29 27 12 50 50 H 1.09001 * 109.46832 * 59.29304 * 29 27 12 51 51 H 1.09004 * 109.47261 * 299.29286 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9525 4.0279 0.0000 7 6 2.6188 3.4129 1.1918 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9859 0.6377 2.9873 11 8 4.0161 0.6184 2.3475 12 7 2.8965 -0.0526 4.1415 13 6 1.6556 -0.0386 4.9279 14 6 1.2196 -1.4841 5.1870 15 6 2.3707 -2.2500 5.8431 16 1 2.6486 -1.7589 6.7757 17 7 1.9462 -3.6240 6.1226 18 6 1.2694 -3.9098 7.2782 19 1 1.0490 -3.1224 7.9837 20 6 0.8667 -5.2117 7.5427 21 7 1.1348 -6.1712 6.6827 22 14 -0.0572 -5.6014 9.1188 23 1 -1.5168 -5.4613 8.8846 24 1 0.2454 -6.9933 9.5386 25 1 0.3655 -4.6595 10.1862 26 6 3.5753 -2.2706 4.8992 27 6 4.0378 -0.8345 4.6366 28 1 4.8325 -0.8373 3.8906 29 6 4.5570 -0.2172 5.9367 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2576 1.5016 -2.1246 36 1 3.0771 3.8234 -2.1246 37 1 3.3117 5.0464 -0.0001 38 1 2.7173 3.9508 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5425 2.1904 3.2322 41 1 0.8768 0.4839 4.3724 42 1 1.8308 0.4662 5.8780 43 1 0.9577 -1.9600 4.2421 44 1 0.3542 -1.4903 5.8498 45 1 2.1444 -4.3313 5.4889 46 1 0.8530 -7.0808 6.8674 47 1 3.2912 -2.7391 3.9569 48 1 4.3868 -2.8362 5.3572 49 1 5.3954 -0.8059 6.3089 50 1 3.7594 -0.2107 6.6796 51 1 4.8859 0.8047 5.7478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044650057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:07 Heat of formation + Delta-G solvation = -31.276125 kcal Electronic energy + Delta-G solvation = -29060.927582 eV Core-core repulsion = 25344.832670 eV Total energy + Delta-G solvation = -3716.094912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63123 -40.32808 -38.74457 -36.20174 -35.23579 -34.18997 -33.58824 -32.91328 -31.01940 -30.36389 -28.74414 -28.34563 -25.94841 -24.76102 -24.36221 -23.59530 -22.73363 -21.88758 -21.01566 -19.64981 -18.86063 -18.30084 -17.41138 -17.08003 -16.77980 -16.58726 -15.99131 -15.86575 -15.64197 -15.28996 -14.98854 -14.86929 -14.66877 -14.46838 -14.32070 -14.19398 -13.97401 -13.84891 -13.69040 -13.17029 -12.99458 -12.93254 -12.85527 -12.83240 -12.71380 -12.65165 -12.42454 -12.15631 -12.14824 -12.05652 -11.95108 -11.69515 -11.66993 -11.54836 -11.09749 -10.91819 -10.76912 -9.66353 -9.62779 -9.45200 -8.98739 -7.91504 -5.19975 0.45336 0.54146 1.49217 1.50214 1.58449 1.64930 2.02993 2.58101 2.89113 3.41949 3.60050 3.69465 3.81669 3.86144 3.95857 4.02228 4.05320 4.10790 4.13401 4.27199 4.31254 4.34987 4.39036 4.47598 4.51832 4.54542 4.61193 4.63758 4.67199 4.71236 4.76702 4.80663 4.86801 5.01758 5.03546 5.07211 5.07285 5.08886 5.16594 5.24172 5.28046 5.35326 5.37450 5.54109 5.57966 5.61425 5.65141 5.68211 5.78017 6.16967 6.30101 6.48017 7.20679 7.36049 8.12289 8.34997 9.32305 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002730 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.917783 B =10253.930637 C =10919.505192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.078 4.078 9 C -0.101 4.101 10 C 0.517 3.483 11 O -0.578 6.578 12 N -0.602 5.602 13 C 0.112 3.888 14 C -0.142 4.142 15 C 0.176 3.824 16 H 0.054 0.946 17 N -0.739 5.739 18 C -0.231 4.231 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.267 1.267 26 C -0.123 4.123 27 C 0.147 3.853 28 H 0.081 0.919 29 C -0.152 4.152 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.045 0.955 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 22.386 -11.875 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.135 4.135 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.307 3.693 11 O -0.458 6.458 12 N -0.334 5.334 13 C -0.011 4.011 14 C -0.183 4.183 15 C 0.068 3.932 16 H 0.072 0.928 17 N -0.377 5.377 18 C -0.363 4.363 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.799 3.201 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.192 1.192 26 C -0.162 4.162 27 C 0.043 3.957 28 H 0.100 0.900 29 C -0.210 4.210 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.200 0.800 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.972 22.400 -12.006 25.433 hybrid contribution -0.278 -1.368 0.515 1.488 sum 0.693 21.032 -11.491 23.977 Atomic orbital electron populations 1.21737 0.93272 1.02297 1.02635 1.20536 0.97198 0.92532 1.02170 1.19881 0.98790 0.95998 0.93277 1.21237 1.00289 0.95876 0.97627 1.21420 0.99179 0.94601 0.99071 1.21386 1.00384 1.00984 0.92351 1.21245 0.98678 0.94404 0.99218 1.19335 1.00593 0.94534 0.93426 1.20820 0.96596 1.00409 0.96174 1.20951 0.89581 0.79163 0.79635 1.90676 1.33090 1.64882 1.57176 1.48310 1.14635 1.47941 1.22562 1.21928 0.85389 0.96747 0.96995 1.22461 0.99961 0.95282 1.00572 1.20420 0.91905 0.85132 0.95788 0.92778 1.42682 1.67511 1.05003 1.22551 1.19620 1.26304 0.93093 0.97235 0.90188 1.25541 1.03744 0.96119 1.01716 1.69825 1.53862 1.00499 1.38233 0.85191 0.78325 0.76687 0.79895 1.21514 1.22793 1.19199 1.22061 0.98740 0.96106 0.99251 1.21001 0.88439 0.89413 0.96875 0.90041 1.22068 1.01775 1.00977 0.96203 0.91730 0.92010 0.92051 0.91030 0.93060 0.85068 0.84098 0.84083 0.84880 0.86781 0.85407 0.87282 0.89470 0.93649 0.91355 0.80008 0.94257 0.93574 0.91379 0.90962 0.91499 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.72 71.98 0.70 -1.78 16 2 C -0.09 -1.89 5.38 29.85 0.16 -1.73 16 3 C -0.08 -1.79 5.13 -19.87 -0.10 -1.89 16 4 C -0.13 -2.67 9.68 22.27 0.22 -2.45 16 5 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 7 C -0.12 -2.33 9.68 22.27 0.22 -2.11 16 8 C -0.08 -1.73 4.37 -19.86 -0.09 -1.82 16 9 C -0.10 -1.97 3.51 29.10 0.10 -1.87 16 10 C 0.52 13.83 6.90 87.66 0.60 14.44 16 11 O -0.58 -20.11 15.45 -3.03 -0.05 -20.15 16 12 N -0.60 -15.32 2.68 -795.11 -2.13 -17.45 16 13 C 0.11 2.43 5.92 86.36 0.51 2.94 16 14 C -0.14 -4.36 5.66 30.67 0.17 -4.19 16 15 C 0.18 6.41 2.52 45.02 0.11 6.52 16 16 H 0.05 1.96 6.44 -2.39 -0.02 1.94 16 17 N -0.74 -35.90 5.12 -322.80 -1.65 -37.55 16 18 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 22 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C -0.12 -4.07 5.02 30.66 0.15 -3.91 16 27 C 0.15 4.12 3.20 44.96 0.14 4.27 16 28 H 0.08 2.54 7.01 -2.39 -0.02 2.53 16 29 C -0.15 -3.61 9.02 71.98 0.65 -2.96 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.00 6.80 -2.39 -0.02 0.98 16 33 H 0.07 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.05 1.32 6.42 -2.39 -0.02 1.30 16 35 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.11 2.01 5.17 -2.39 -0.01 2.00 16 40 H 0.13 1.74 7.85 -2.38 -0.02 1.72 16 41 H 0.11 1.72 5.93 -2.39 -0.01 1.71 16 42 H 0.09 1.64 7.48 -2.39 -0.02 1.63 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.37 19.84 7.80 -92.71 -0.72 19.11 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.07 1.56 5.72 -2.39 -0.01 1.55 16 51 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -69.75 396.62 3.98 -65.77 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: 0.20 Total: 37.26 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.30 Total: -16.13 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.50 Total: -113.93 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.75 3.98 -65.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044650057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.498 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds