Wall clock time and date at job start Tue Mar 31 2020 16:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47336 * 2 1 4 4 C 1.38254 * 119.99880 * 270.02123 * 3 2 1 5 5 C 1.38213 * 119.99968 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99645 * 359.69519 * 5 4 3 7 7 C 1.38209 * 120.00123 * 0.55645 * 6 5 4 8 8 C 1.50698 * 120.00066 * 179.74054 * 7 6 5 9 9 C 1.50702 * 109.47310 * 269.72668 * 8 7 6 10 10 O 1.21282 * 119.99832 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99870 * 179.97438 * 9 8 7 12 12 C 1.46929 * 120.63179 * 354.22978 * 11 9 8 13 13 C 1.53188 * 108.77228 * 126.37079 * 12 11 9 14 14 C 1.53042 * 109.31548 * 54.63613 * 13 12 11 15 15 H 1.08999 * 109.45973 * 178.62438 * 14 13 12 16 16 N 1.46502 * 109.46209 * 58.65348 * 14 13 12 17 17 C 1.36937 * 119.99831 * 84.96921 * 16 14 13 18 18 H 1.07997 * 120.00268 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99778 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99946 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47251 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47393 * 240.00276 * 21 19 17 24 24 H 1.48504 * 109.47115 * 120.00334 * 21 19 17 25 25 C 1.53038 * 109.52307 * 298.63984 * 14 13 12 26 26 C 1.46926 * 120.62895 * 174.20999 * 11 9 8 27 27 H 1.09000 * 109.58961 * 113.84557 * 26 11 9 28 28 C 1.53006 * 109.58593 * 353.55849 * 26 11 9 29 29 C 1.38216 * 119.99733 * 90.00018 * 3 2 1 30 30 H 1.08996 * 109.47705 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46822 * 300.00583 * 1 2 3 32 32 H 1.09006 * 109.46866 * 59.99812 * 1 2 3 33 33 H 1.08996 * 109.47161 * 239.99496 * 2 1 3 34 34 H 1.08999 * 109.46641 * 119.99913 * 2 1 3 35 35 H 1.08002 * 120.00013 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99953 * 179.97438 * 5 4 3 37 37 H 1.07999 * 119.99764 * 180.30186 * 6 5 4 38 38 H 1.09002 * 109.47394 * 149.72794 * 8 7 6 39 39 H 1.09006 * 109.47320 * 29.73055 * 8 7 6 40 40 H 1.08999 * 109.58856 * 6.58238 * 12 11 9 41 41 H 1.09000 * 109.70417 * 246.22598 * 12 11 9 42 42 H 1.08999 * 109.49888 * 294.67983 * 13 12 11 43 43 H 1.09005 * 109.52106 * 174.60028 * 13 12 11 44 44 H 0.97001 * 119.99913 * 264.97536 * 16 14 13 45 45 H 0.97003 * 120.00097 * 359.97438 * 20 19 17 46 46 H 1.09002 * 109.49603 * 181.31070 * 25 14 13 47 47 H 1.08993 * 109.50115 * 301.40150 * 25 14 13 48 48 H 1.09003 * 109.46787 * 65.74283 * 28 26 11 49 49 H 1.08998 * 109.46943 * 185.74433 * 28 26 11 50 50 H 1.09003 * 109.46825 * 305.74502 * 28 26 11 51 51 H 1.07997 * 120.00545 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7237 3.3756 -1.1974 6 6 2.9491 4.0291 0.0000 7 6 2.7241 3.3757 1.1970 8 6 2.9753 4.0860 2.5021 9 6 4.3986 3.8492 2.9371 10 8 5.1364 3.1707 2.2543 11 7 4.8517 4.3921 4.0844 12 6 4.0126 5.3183 4.8570 13 6 3.9172 4.8109 6.2992 14 6 5.3271 4.6208 6.8633 15 1 5.2620 4.2831 7.8976 16 7 6.0499 5.8940 6.8102 17 6 5.9085 6.8043 7.8234 18 1 5.2646 6.5834 8.6618 19 6 6.5938 8.0104 7.7734 20 7 7.3790 8.2793 6.7519 21 14 6.4015 9.2519 9.1558 22 1 5.4698 8.7131 10.1790 23 1 5.8573 10.5209 8.6094 24 1 7.7251 9.5084 9.7784 25 6 6.0740 3.5755 6.0316 26 6 6.1941 4.0687 4.5866 27 1 6.8204 4.9603 4.5556 28 6 6.8168 2.9740 3.7178 29 6 2.2628 2.0723 1.1970 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0825 1.5635 -2.1326 36 1 2.9038 3.8846 -2.1327 37 1 3.3048 5.0488 0.0000 38 1 2.2945 3.7020 3.2618 39 1 2.8083 5.1553 2.3718 40 1 3.0158 5.3611 4.4180 41 1 4.4587 6.3128 4.8482 42 1 3.3873 3.8586 6.3156 43 1 3.3776 5.5380 6.9062 44 1 6.6285 6.0922 6.0573 45 1 7.4791 7.6345 6.0342 46 1 7.0699 3.4234 6.4477 47 1 5.5239 2.6347 6.0505 48 1 6.9838 3.3595 2.7120 49 1 7.7678 2.6637 4.1506 50 1 6.1422 2.1190 3.6719 51 1 2.0824 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044660401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:14 Heat of formation + Delta-G solvation = -0.488197 kcal Electronic energy + Delta-G solvation = -28879.481207 eV Core-core repulsion = 25164.721360 eV Total energy + Delta-G solvation = -3714.759847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52702 -39.40752 -37.48578 -34.68047 -34.38402 -33.19185 -32.08229 -31.84622 -29.66106 -28.90226 -27.68509 -26.80287 -24.12763 -24.05061 -23.43815 -22.55387 -21.75166 -20.67154 -19.75716 -18.38173 -17.27595 -16.63205 -16.62275 -16.02632 -15.79558 -15.34969 -15.03745 -14.62568 -14.16094 -14.02144 -13.91503 -13.78784 -13.63553 -13.45157 -13.26742 -13.11680 -12.93004 -12.88168 -12.21457 -12.16509 -11.95698 -11.88899 -11.85836 -11.58580 -11.40219 -11.27503 -10.99006 -10.90749 -10.84258 -10.69452 -10.55792 -10.33437 -10.19774 -10.05340 -9.20678 -9.00135 -8.97151 -8.79199 -8.59628 -8.20232 -7.07848 -6.13489 -3.14171 1.26995 1.34105 2.82114 3.19702 3.48982 3.55122 3.64321 3.72624 4.50973 4.56758 4.63487 4.73068 4.77296 4.93686 5.01870 5.10361 5.13846 5.17117 5.22747 5.29526 5.32883 5.38026 5.42696 5.44391 5.49931 5.56452 5.63551 5.65263 5.65691 5.68756 5.79896 5.88970 5.92986 5.98429 6.02686 6.03873 6.09945 6.21162 6.35085 6.38587 6.42014 6.49127 6.54221 6.55160 6.65176 6.67746 6.74159 6.94208 7.00698 7.71662 7.78575 8.42752 8.71550 9.18199 10.04641 10.19958 11.34418 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.002531 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.873421 B =11058.885591 C =11161.474275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.055 4.055 8 C -0.106 4.106 9 C 0.515 3.485 10 O -0.534 6.534 11 N -0.601 5.601 12 C 0.114 3.886 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.051 0.949 16 N -0.733 5.733 17 C -0.330 4.330 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.944 5.944 21 Si 1.084 2.916 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.134 4.134 26 C 0.147 3.853 27 H 0.073 0.927 28 C -0.134 4.134 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.366 0.634 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.040 0.960 50 H 0.059 0.941 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 -13.874 -12.731 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.146 4.146 9 C 0.303 3.697 10 O -0.412 6.412 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.190 4.190 14 C 0.069 3.931 15 H 0.069 0.931 16 N -0.377 5.377 17 C -0.461 4.461 18 H 0.083 0.917 19 C -0.242 4.242 20 N -0.589 5.589 21 Si 0.915 3.085 22 H -0.222 1.222 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.173 4.173 26 C 0.045 3.955 27 H 0.091 0.909 28 C -0.191 4.191 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.498 -12.759 -12.321 21.698 hybrid contribution -0.362 -1.242 -0.547 1.405 sum -12.860 -14.001 -12.869 22.957 Atomic orbital electron populations 1.21747 0.94803 1.01574 1.02191 1.20531 0.96061 0.92811 1.02803 1.19804 0.99346 0.96045 0.93106 1.20954 1.00717 0.95041 0.97295 1.21054 0.99620 0.94951 0.97806 1.20972 0.99774 1.00040 0.92001 1.19292 0.98279 0.94246 0.93709 1.20777 0.95565 1.02329 0.95902 1.20372 0.89011 0.79676 0.80682 1.90739 1.56906 1.39810 1.53731 1.48197 1.16620 1.45784 1.22801 1.21714 0.93802 0.93544 0.91805 1.22492 1.00760 1.00098 0.95618 1.20117 0.89774 0.86667 0.96529 0.93092 1.42525 1.54180 1.15677 1.25317 1.20091 1.26487 0.98749 1.00795 0.91706 1.25729 0.97205 0.98036 1.03270 1.70827 1.39882 1.37952 1.10276 0.83166 0.75592 0.75494 0.74230 1.22167 1.22081 1.22083 1.22252 1.01604 0.98726 0.94739 1.21190 0.82438 0.98481 0.93438 0.90927 1.22181 0.98860 0.98178 0.99885 1.20809 0.99805 0.93963 0.97495 0.92505 0.92530 0.92627 0.91156 0.91086 0.86472 0.86221 0.86332 0.88237 0.88167 0.91032 0.90091 0.93216 0.90775 0.79917 0.93400 0.90894 0.92015 0.90600 0.94092 0.92152 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.31 9.70 -39.58 -0.38 -1.69 16 7 C -0.05 -0.67 4.37 -104.63 -0.46 -1.13 16 8 C -0.11 -1.25 4.19 -29.04 -0.12 -1.37 16 9 C 0.51 7.80 7.50 -10.98 -0.08 7.72 16 10 O -0.53 -9.44 11.60 5.56 0.06 -9.37 16 11 N -0.60 -9.38 2.97 -165.23 -0.49 -9.87 16 12 C 0.11 1.74 6.09 -3.71 -0.02 1.72 16 13 C -0.15 -2.40 5.78 -26.61 -0.15 -2.55 16 14 C 0.18 3.37 3.10 -67.89 -0.21 3.16 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.73 -17.12 4.31 -53.38 -0.23 -17.35 16 17 C -0.33 -8.80 9.93 -15.06 -0.15 -8.95 16 18 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 19 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 20 N -0.94 -28.44 13.70 55.49 0.76 -27.68 16 21 Si 1.08 25.41 29.92 -169.99 -5.09 20.32 16 22 H -0.30 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.13 -2.22 5.08 -26.63 -0.14 -2.35 16 26 C 0.15 2.47 3.19 -67.61 -0.22 2.26 16 27 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 28 C -0.13 -2.15 7.62 37.16 0.28 -1.87 16 29 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 39 H 0.10 1.05 7.65 -51.93 -0.40 0.65 16 40 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 41 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.37 8.97 4.89 -40.82 -0.20 8.77 16 45 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 1.00 6.95 -51.93 -0.36 0.64 16 51 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -31.34 396.49 -10.82 -42.17 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -8.58 Total: 10.06 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.24 Total: -14.24 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.04 Total: -54.91 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.06 Total: -9.37 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.34 -10.82 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.677 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds