Wall clock time and date at job start Tue Mar 31 2020 16:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38267 * 119.99576 * 269.72620 * 3 2 1 5 5 C 1.38216 * 119.99378 * 179.76526 * 4 3 2 6 6 C 1.38246 * 120.00392 * 0.48416 * 5 4 3 7 7 C 1.38219 * 120.00236 * 359.78963 * 6 5 4 8 8 C 1.50695 * 120.00215 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47407 * 269.97829 * 8 7 6 10 10 O 1.21284 * 120.00057 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00380 * 180.02562 * 9 8 7 12 12 C 1.46926 * 120.63079 * 359.97438 * 11 9 8 13 13 C 1.53198 * 108.77387 * 126.37298 * 12 11 9 14 14 C 1.53043 * 109.30942 * 54.64020 * 13 12 11 15 15 H 1.09000 * 109.46016 * 58.64268 * 14 13 12 16 16 N 1.46501 * 109.45884 * 178.61420 * 14 13 12 17 17 C 1.36934 * 120.00120 * 275.00029 * 16 14 13 18 18 H 1.08006 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00398 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99578 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47410 * 0.02562 * 21 19 17 23 23 H 1.48511 * 109.46758 * 120.00327 * 21 19 17 24 24 H 1.48496 * 109.47236 * 240.00116 * 21 19 17 25 25 C 1.53037 * 109.53855 * 298.63322 * 14 13 12 26 26 C 1.46930 * 120.63149 * 179.72261 * 11 9 8 27 27 H 1.09002 * 109.58756 * 353.41098 * 26 11 9 28 28 C 1.53002 * 109.58692 * 113.83812 * 26 11 9 29 29 C 1.38212 * 120.00240 * 89.99393 * 3 2 1 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 32 32 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 35 35 H 1.07998 * 120.00137 * 359.97438 * 4 3 2 36 36 H 1.08005 * 119.99495 * 180.24719 * 5 4 3 37 37 H 1.08003 * 120.00175 * 179.76564 * 6 5 4 38 38 H 1.09003 * 109.47245 * 29.98096 * 8 7 6 39 39 H 1.09003 * 109.47192 * 149.97448 * 8 7 6 40 40 H 1.09001 * 109.59293 * 246.16395 * 12 11 9 41 41 H 1.09008 * 109.58306 * 6.59183 * 12 11 9 42 42 H 1.08994 * 109.49705 * 174.59168 * 13 12 11 43 43 H 1.08998 * 109.49689 * 294.69079 * 13 12 11 44 44 H 0.96998 * 119.99868 * 94.99727 * 16 14 13 45 45 H 0.97000 * 119.99306 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.50000 * 181.31783 * 25 14 13 47 47 H 1.09000 * 109.49845 * 301.38551 * 25 14 13 48 48 H 1.09000 * 109.46920 * 59.99918 * 28 26 11 49 49 H 1.09008 * 109.46506 * 179.97438 * 28 26 11 50 50 H 1.08997 * 109.47390 * 299.99691 * 28 26 11 51 51 H 1.07999 * 120.00248 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1975 5 6 2.7243 3.3753 -1.1974 6 6 2.9543 4.0273 -0.0002 7 6 2.7240 3.3758 1.1968 8 6 2.9752 4.0862 2.5018 9 6 4.3982 3.8490 2.9372 10 8 5.1358 3.1695 2.2551 11 7 4.8512 4.3911 4.0849 12 6 3.9696 5.2161 4.9222 13 6 3.9774 4.6556 6.3479 14 6 5.4206 4.5690 6.8498 15 1 5.8742 5.5598 6.8236 16 7 5.4296 4.0644 8.2252 17 6 5.2556 4.9289 9.2728 18 1 5.1122 5.9828 9.0852 19 6 5.2636 4.4508 10.5759 20 7 5.4389 3.1664 10.8046 21 14 5.0270 5.6302 12.0050 22 1 4.8520 7.0099 11.4845 23 1 3.8212 5.2363 12.7774 24 1 6.2189 5.5818 12.8893 25 6 6.2182 3.6194 5.9531 26 6 6.2343 4.1638 4.5256 27 1 6.7139 3.4409 3.8656 28 6 7.0066 5.4842 4.4927 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 2.0928 1.5598 -2.1327 36 1 2.9047 3.8843 -2.1328 37 1 3.3143 5.0455 -0.0003 38 1 2.8086 5.1555 2.3714 39 1 2.2941 3.7025 3.2614 40 1 4.3316 6.2442 4.9318 41 1 2.9553 5.1873 4.5238 42 1 3.4040 5.3137 7.0007 43 1 3.5311 3.6611 6.3503 44 1 5.5587 3.1180 8.3937 45 1 5.4441 2.8323 11.7152 46 1 7.2398 3.5401 6.3249 47 1 5.7512 2.6346 5.9597 48 1 6.5276 6.2019 5.1586 49 1 8.0322 5.3133 4.8203 50 1 7.0103 5.8778 3.4763 51 1 2.0830 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044660403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:21 Heat of formation + Delta-G solvation = -17.383102 kcal Electronic energy + Delta-G solvation = -28303.152522 eV Core-core repulsion = 24587.660057 eV Total energy + Delta-G solvation = -3715.492465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45452 -39.40625 -37.55265 -34.63700 -34.51812 -33.02804 -32.00839 -31.77729 -29.69314 -29.35460 -27.65438 -27.24519 -24.21933 -24.11323 -22.98541 -22.57635 -21.72545 -20.86219 -19.87078 -18.24261 -17.25045 -16.97554 -16.65220 -15.99242 -15.68376 -15.12374 -15.00559 -14.87867 -14.03774 -14.00823 -13.96305 -13.75209 -13.53626 -13.48003 -13.28230 -13.13615 -12.95033 -12.71826 -12.56757 -12.22664 -11.99847 -11.92268 -11.78689 -11.64211 -11.44162 -11.28057 -10.98961 -10.95619 -10.92043 -10.88434 -10.75895 -10.46407 -10.18733 -9.79481 -9.67773 -9.62262 -8.94004 -8.86225 -8.69209 -8.46304 -7.00207 -5.80328 -3.09496 1.23446 1.31517 2.72830 3.08483 3.39975 3.45454 3.47947 3.68514 4.48412 4.54040 4.55103 4.67555 4.70354 4.93505 4.98984 5.05835 5.09144 5.13775 5.18599 5.25946 5.28365 5.32920 5.33675 5.41602 5.46663 5.48151 5.57626 5.61029 5.67341 5.68184 5.76308 5.81550 5.89204 5.91141 5.97497 6.01419 6.07238 6.17667 6.29491 6.35318 6.37745 6.46147 6.46728 6.52252 6.53617 6.65022 6.89691 6.91575 7.03153 7.56380 7.65917 8.29391 8.37985 9.49207 10.07047 10.41510 11.42294 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.002401 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.733763 B =11657.133065 C =12417.756773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.541 6.541 11 N -0.602 5.602 12 C 0.105 3.895 13 C -0.152 4.152 14 C 0.179 3.821 15 H 0.051 0.949 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.134 4.134 26 C 0.142 3.858 27 H 0.094 0.906 28 C -0.160 4.160 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 0.551 -23.439 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.143 4.143 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.335 5.335 12 C -0.018 4.018 13 C -0.193 4.193 14 C 0.069 3.931 15 H 0.069 0.931 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.172 4.172 26 C 0.039 3.961 27 H 0.112 0.888 28 C -0.218 4.218 29 C -0.120 4.120 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.284 0.337 -23.653 24.752 hybrid contribution -0.151 0.379 1.100 1.173 sum -7.436 0.717 -22.553 23.758 Atomic orbital electron populations 1.21746 0.94749 1.01651 1.02171 1.20545 0.96116 0.92745 1.02909 1.19828 0.99142 0.96122 0.93077 1.20971 1.00620 0.95002 0.97328 1.21040 0.99780 0.94960 0.97764 1.20934 0.99942 0.99977 0.92000 1.19293 0.98534 0.94347 0.93667 1.20728 0.95211 1.02300 0.96076 1.20422 0.89232 0.79353 0.80536 1.90694 1.58277 1.39051 1.53782 1.48258 1.12766 1.50776 1.21741 1.21871 0.93422 0.94427 0.92092 1.22680 1.01927 1.01398 0.93270 1.20189 0.91651 0.95934 0.85319 0.93120 1.42449 1.86613 1.08181 0.99208 1.19262 1.41411 0.90607 0.85665 0.91149 1.24754 1.02882 0.95973 0.97386 1.69677 1.56854 1.11857 1.19626 0.86144 0.77325 0.79956 0.82912 1.20562 1.21900 1.21882 1.22141 1.01825 0.99905 0.93379 1.21078 0.81221 0.97657 0.96186 0.88795 1.22140 1.00467 0.97596 1.01589 1.20857 0.99513 0.93937 0.97659 0.92448 0.92484 0.92661 0.90957 0.91131 0.86428 0.86240 0.86416 0.88081 0.87897 0.91438 0.90512 0.90663 0.92216 0.78302 0.93544 0.90602 0.91955 0.91676 0.91418 0.92980 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.09 -0.72 6.07 -27.88 -0.17 -0.89 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 6 C -0.11 -1.21 9.70 -39.59 -0.38 -1.59 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.13 16 8 C -0.10 -1.10 4.18 -29.04 -0.12 -1.22 16 9 C 0.52 7.29 7.69 -10.99 -0.08 7.21 16 10 O -0.54 -9.56 15.45 5.55 0.09 -9.47 16 11 N -0.60 -8.20 2.68 -165.45 -0.44 -8.65 16 12 C 0.11 1.29 5.93 -3.71 -0.02 1.27 16 13 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 14 C 0.18 3.33 2.53 -67.89 -0.17 3.16 16 15 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 16 N -0.72 -17.48 5.12 -53.38 -0.27 -17.75 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 C -0.13 -2.21 5.00 -26.82 -0.13 -2.34 16 26 C 0.14 2.06 3.19 -67.80 -0.22 1.84 16 27 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 28 C -0.16 -2.05 9.02 37.16 0.34 -1.71 16 29 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 39 H 0.10 0.97 7.64 -51.93 -0.40 0.57 16 40 H 0.07 0.77 7.51 -51.93 -0.39 0.38 16 41 H 0.08 0.75 5.93 -51.92 -0.31 0.44 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.85 5.73 -51.93 -0.30 0.55 16 49 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -32.06 403.84 -10.69 -42.74 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.70 Total: 8.99 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.14 Total: -11.82 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.01 Total: -53.44 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.06 -10.69 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.361 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds