Wall clock time and date at job start Tue Mar 31 2020 16:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38267 * 119.99576 * 269.72620 * 3 2 1 5 5 C 1.38216 * 119.99378 * 179.76526 * 4 3 2 6 6 C 1.38246 * 120.00392 * 0.48416 * 5 4 3 7 7 C 1.38219 * 120.00236 * 359.78963 * 6 5 4 8 8 C 1.50695 * 120.00215 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47407 * 269.97829 * 8 7 6 10 10 O 1.21284 * 120.00057 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00380 * 180.02562 * 9 8 7 12 12 C 1.46926 * 120.63079 * 359.97438 * 11 9 8 13 13 C 1.53198 * 108.77387 * 126.37298 * 12 11 9 14 14 C 1.53043 * 109.30942 * 54.64020 * 13 12 11 15 15 H 1.09000 * 109.46016 * 58.64268 * 14 13 12 16 16 N 1.46501 * 109.45884 * 178.61420 * 14 13 12 17 17 C 1.36934 * 120.00120 * 275.00029 * 16 14 13 18 18 H 1.08006 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00398 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99578 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47410 * 0.02562 * 21 19 17 23 23 H 1.48511 * 109.46758 * 120.00327 * 21 19 17 24 24 H 1.48496 * 109.47236 * 240.00116 * 21 19 17 25 25 C 1.53037 * 109.53855 * 298.63322 * 14 13 12 26 26 C 1.46930 * 120.63149 * 179.72261 * 11 9 8 27 27 H 1.09002 * 109.58756 * 353.41098 * 26 11 9 28 28 C 1.53002 * 109.58692 * 113.83812 * 26 11 9 29 29 C 1.38212 * 120.00240 * 89.99393 * 3 2 1 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 32 32 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 35 35 H 1.07998 * 120.00137 * 359.97438 * 4 3 2 36 36 H 1.08005 * 119.99495 * 180.24719 * 5 4 3 37 37 H 1.08003 * 120.00175 * 179.76564 * 6 5 4 38 38 H 1.09003 * 109.47245 * 29.98096 * 8 7 6 39 39 H 1.09003 * 109.47192 * 149.97448 * 8 7 6 40 40 H 1.09001 * 109.59293 * 246.16395 * 12 11 9 41 41 H 1.09008 * 109.58306 * 6.59183 * 12 11 9 42 42 H 1.08994 * 109.49705 * 174.59168 * 13 12 11 43 43 H 1.08998 * 109.49689 * 294.69079 * 13 12 11 44 44 H 0.96998 * 119.99868 * 94.99727 * 16 14 13 45 45 H 0.97000 * 119.99306 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.50000 * 181.31783 * 25 14 13 47 47 H 1.09000 * 109.49845 * 301.38551 * 25 14 13 48 48 H 1.09000 * 109.46920 * 59.99918 * 28 26 11 49 49 H 1.09008 * 109.46506 * 179.97438 * 28 26 11 50 50 H 1.08997 * 109.47390 * 299.99691 * 28 26 11 51 51 H 1.07999 * 120.00248 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1975 5 6 2.7243 3.3753 -1.1974 6 6 2.9543 4.0273 -0.0002 7 6 2.7240 3.3758 1.1968 8 6 2.9752 4.0862 2.5018 9 6 4.3982 3.8490 2.9372 10 8 5.1358 3.1695 2.2551 11 7 4.8512 4.3911 4.0849 12 6 3.9696 5.2161 4.9222 13 6 3.9774 4.6556 6.3479 14 6 5.4206 4.5690 6.8498 15 1 5.8742 5.5598 6.8236 16 7 5.4296 4.0644 8.2252 17 6 5.2556 4.9289 9.2728 18 1 5.1122 5.9828 9.0852 19 6 5.2636 4.4508 10.5759 20 7 5.4389 3.1664 10.8046 21 14 5.0270 5.6302 12.0050 22 1 4.8520 7.0099 11.4845 23 1 3.8212 5.2363 12.7774 24 1 6.2189 5.5818 12.8893 25 6 6.2182 3.6194 5.9531 26 6 6.2343 4.1638 4.5256 27 1 6.7139 3.4409 3.8656 28 6 7.0066 5.4842 4.4927 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 2.0928 1.5598 -2.1327 36 1 2.9047 3.8843 -2.1328 37 1 3.3143 5.0455 -0.0003 38 1 2.8086 5.1555 2.3714 39 1 2.2941 3.7025 3.2614 40 1 4.3316 6.2442 4.9318 41 1 2.9553 5.1873 4.5238 42 1 3.4040 5.3137 7.0007 43 1 3.5311 3.6611 6.3503 44 1 5.5587 3.1180 8.3937 45 1 5.4441 2.8323 11.7152 46 1 7.2398 3.5401 6.3249 47 1 5.7512 2.6346 5.9597 48 1 6.5276 6.2019 5.1586 49 1 8.0322 5.3133 4.8203 50 1 7.0103 5.8778 3.4763 51 1 2.0830 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044660403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:20 Heat of formation + Delta-G solvation = -33.980817 kcal Electronic energy + Delta-G solvation = -28303.872253 eV Core-core repulsion = 24587.660057 eV Total energy + Delta-G solvation = -3716.212196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53753 -40.27873 -38.82012 -36.21488 -35.36092 -34.12672 -33.55585 -32.85643 -31.02974 -30.37147 -28.74448 -28.33853 -25.95613 -24.79563 -24.37089 -23.61045 -22.79981 -21.94388 -20.85618 -19.63587 -18.86023 -18.29132 -17.44130 -16.88707 -16.79373 -16.63603 -15.99889 -15.87550 -15.64978 -15.32185 -14.94837 -14.88522 -14.69725 -14.55665 -14.35524 -14.16716 -13.97090 -13.88082 -13.62960 -13.16804 -12.98737 -12.93816 -12.89602 -12.81716 -12.71192 -12.60558 -12.42894 -12.13395 -12.10133 -12.04396 -11.94611 -11.70243 -11.66647 -11.62315 -11.10368 -10.93195 -10.77767 -9.66709 -9.63030 -9.47272 -8.99405 -7.92255 -5.20787 0.44312 0.53038 1.48890 1.49186 1.59015 1.64794 2.02801 2.57587 2.87791 3.41422 3.60997 3.68888 3.81731 3.83411 3.95993 4.01922 4.05956 4.13091 4.23995 4.26830 4.28866 4.38014 4.39223 4.50283 4.54253 4.57582 4.59831 4.61841 4.66008 4.70543 4.79037 4.80629 4.86760 5.00988 5.04046 5.06984 5.08538 5.09269 5.21006 5.23310 5.27697 5.35172 5.37908 5.53791 5.57483 5.59538 5.67490 5.68805 5.75189 6.16076 6.29590 6.47980 7.20166 7.35364 8.11490 8.34162 9.31788 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.002401 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.733763 B =11657.133065 C =12417.756773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.074 4.074 8 C -0.097 4.097 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.143 4.143 14 C 0.175 3.825 15 H 0.055 0.945 16 N -0.739 5.739 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.970 3.030 22 H -0.262 1.262 23 H -0.297 1.297 24 H -0.298 1.298 25 C -0.123 4.123 26 C 0.147 3.853 27 H 0.081 0.919 28 C -0.152 4.152 29 C -0.124 4.124 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 2.564 -25.250 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.136 4.136 9 C 0.305 3.695 10 O -0.461 6.461 11 N -0.334 5.334 12 C -0.010 4.010 13 C -0.184 4.184 14 C 0.067 3.933 15 H 0.073 0.927 16 N -0.378 5.378 17 C -0.361 4.361 18 H 0.099 0.901 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.224 1.224 24 H -0.225 1.225 25 C -0.162 4.162 26 C 0.043 3.957 27 H 0.099 0.901 28 C -0.210 4.210 29 C -0.142 4.142 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.397 2.403 -25.507 26.961 hybrid contribution 0.216 -0.287 1.557 1.598 sum -8.180 2.116 -23.950 25.397 Atomic orbital electron populations 1.21713 0.93794 1.02377 1.02016 1.20582 0.96916 0.91730 1.03103 1.20114 0.98936 0.97021 0.93103 1.21283 1.00193 0.95260 0.97939 1.21385 0.99037 0.95126 0.98531 1.21205 1.00091 1.00794 0.92127 1.19483 0.98990 0.94562 0.94425 1.20773 0.92697 1.04154 0.96021 1.21031 0.90278 0.78221 0.79987 1.90677 1.59658 1.40740 1.55037 1.48318 1.12445 1.50793 1.21890 1.21939 0.95250 0.94570 0.89261 1.22469 0.99285 1.00780 0.95819 1.20431 0.93655 0.96118 0.83108 0.92708 1.42696 1.86720 1.07267 1.01108 1.19663 1.38836 0.91289 0.86330 0.90131 1.25555 1.04183 0.97423 1.00083 1.69840 1.59320 1.13778 1.19535 0.85114 0.76441 0.78880 0.79604 1.18588 1.22417 1.22547 1.22002 1.00850 0.98753 0.94610 1.20928 0.82372 0.98382 0.94047 0.90084 1.22070 1.00388 0.96268 1.02285 1.21025 1.00591 0.94463 0.98085 0.91285 0.93166 0.92253 0.91586 0.90102 0.84439 0.84036 0.85094 0.85115 0.86522 0.89460 0.87053 0.91336 0.93712 0.80027 0.94266 0.91331 0.93640 0.91497 0.90974 0.91933 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.90 71.98 0.71 -1.18 16 2 C -0.09 -1.38 6.07 29.85 0.18 -1.20 16 3 C -0.09 -1.86 5.13 -19.86 -0.10 -1.96 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 7 C -0.07 -1.63 4.37 -19.87 -0.09 -1.72 16 8 C -0.10 -1.84 4.18 29.10 0.12 -1.72 16 9 C 0.52 13.75 7.69 87.66 0.67 14.42 16 10 O -0.58 -20.32 15.45 -3.04 -0.05 -20.37 16 11 N -0.60 -15.30 2.68 -795.74 -2.14 -17.44 16 12 C 0.11 2.42 5.93 86.36 0.51 2.93 16 13 C -0.14 -4.40 5.66 30.68 0.17 -4.22 16 14 C 0.17 6.41 2.53 45.02 0.11 6.52 16 15 H 0.06 1.98 6.43 -2.39 -0.02 1.97 16 16 N -0.74 -36.05 5.12 -322.81 -1.65 -37.71 16 17 C -0.23 -12.21 9.93 84.03 0.83 -11.38 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 20 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 21 Si 0.97 45.27 29.55 68.60 2.03 47.29 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 C -0.12 -4.10 5.00 30.54 0.15 -3.95 16 26 C 0.15 4.13 3.19 44.84 0.14 4.28 16 27 H 0.08 2.54 7.01 -2.39 -0.02 2.53 16 28 C -0.15 -3.61 9.02 71.98 0.65 -2.96 16 29 C -0.12 -2.82 9.36 22.27 0.21 -2.61 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.13 1.68 7.89 -2.39 -0.02 1.66 16 39 H 0.12 1.89 7.64 -2.39 -0.02 1.87 16 40 H 0.09 1.63 7.51 -2.39 -0.02 1.61 16 41 H 0.11 1.70 5.93 -2.38 -0.01 1.69 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.56 5.73 -2.39 -0.01 1.55 16 49 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.48 403.84 4.07 -66.41 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.18 Total: 36.21 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.41 Total: -15.28 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.51 Total: -114.27 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.48 4.07 -66.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.433 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds