Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.47036 * 2 1 4 4 C 1.38249 * 120.00356 * 89.99714 * 3 2 1 5 5 C 1.38213 * 120.00391 * 180.02562 * 4 3 2 6 6 C 1.38263 * 119.99553 * 359.95138 * 5 4 3 7 7 C 1.38214 * 119.99906 * 0.02925 * 6 5 4 8 8 C 1.50704 * 119.99832 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47173 * 89.99637 * 8 7 6 10 10 O 1.21276 * 120.00464 * 359.97438 * 9 8 7 11 11 N 1.34784 * 120.00026 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62598 * 354.66421 * 11 9 8 13 13 C 1.52766 * 109.00664 * 233.58312 * 12 11 9 14 14 C 1.53039 * 109.38336 * 305.59069 * 13 12 11 15 15 H 1.08998 * 109.44657 * 301.22797 * 14 13 12 16 16 N 1.46503 * 109.45883 * 181.25860 * 14 13 12 17 17 C 1.36936 * 119.99500 * 84.93212 * 16 14 13 18 18 H 1.08001 * 120.00472 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99649 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46708 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47483 * 119.99805 * 21 19 17 24 24 H 1.48505 * 109.46823 * 239.99927 * 21 19 17 25 25 C 1.53040 * 109.53933 * 61.23829 * 14 13 12 26 26 C 1.46921 * 120.63055 * 174.94574 * 11 9 8 27 27 H 1.09005 * 109.58446 * 246.29491 * 26 11 9 28 28 C 1.53000 * 109.59014 * 6.57854 * 26 11 9 29 29 C 1.38213 * 119.99351 * 269.72522 * 3 2 1 30 30 H 1.08999 * 109.46698 * 60.00170 * 1 2 3 31 31 H 1.08998 * 109.46664 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46777 * 300.00517 * 1 2 3 33 33 H 1.08998 * 109.46775 * 119.99278 * 2 1 3 34 34 H 1.08997 * 109.47456 * 239.99762 * 2 1 3 35 35 H 1.08006 * 119.99920 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00444 * 179.97438 * 5 4 3 37 37 H 1.07996 * 119.99941 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47047 * 209.99913 * 8 7 6 39 39 H 1.09003 * 109.47037 * 329.99212 * 8 7 6 40 40 H 1.08998 * 109.59029 * 353.42111 * 12 11 9 41 41 H 1.09006 * 109.58337 * 113.84562 * 12 11 9 42 42 H 1.09000 * 109.56148 * 185.55787 * 13 12 11 43 43 H 1.08998 * 109.38466 * 65.51719 * 13 12 11 44 44 H 0.96994 * 120.00147 * 264.93556 * 16 14 13 45 45 H 0.96995 * 120.00131 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.49793 * 178.68067 * 25 14 13 47 47 H 1.09000 * 109.49598 * 58.58526 * 25 14 13 48 48 H 1.09003 * 109.46734 * 55.67218 * 28 26 11 49 49 H 1.08994 * 109.47236 * 175.67489 * 28 26 11 50 50 H 1.08996 * 109.47367 * 295.67671 * 28 26 11 51 51 H 1.08000 * 120.00847 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0727 1.1972 5 6 2.7229 3.3760 1.1972 6 6 2.9539 4.0275 -0.0002 7 6 2.7239 3.3757 -1.1971 8 6 2.9751 4.0860 -2.5023 9 6 4.3985 3.8498 -2.9370 10 8 5.1365 3.1718 -2.2541 11 7 4.8517 4.3928 -4.0843 12 6 3.9408 5.1191 -4.9797 13 6 4.0454 4.5260 -6.3836 14 6 5.5087 4.5364 -6.8317 15 1 5.8845 5.5595 -6.8200 16 7 5.6071 3.9957 -8.1897 17 6 5.4061 4.8144 -9.2688 18 1 5.1746 5.8586 -9.1188 19 6 5.4988 4.3020 -10.5556 20 7 5.7804 3.0293 -10.7384 21 14 5.2253 5.4189 -12.0277 22 1 4.9259 6.7949 -11.5561 23 1 6.4492 5.4386 -12.8684 24 1 4.0826 4.9110 -12.8288 25 6 6.3419 3.6762 -5.8788 26 6 6.2645 4.2644 -4.4664 27 1 6.7379 5.2462 -4.4508 28 6 6.9792 3.3347 -3.4837 29 6 2.2681 2.0704 -1.1970 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 2.0823 1.5637 2.1326 36 1 2.9025 3.8853 2.1325 37 1 3.3130 5.0460 -0.0003 38 1 2.2946 3.7016 -3.2620 39 1 2.8075 5.1552 -2.3721 40 1 2.9173 5.0205 -4.6181 41 1 4.2203 6.1723 -5.0092 42 1 3.4487 5.1199 -7.0760 43 1 3.6758 3.5007 -6.3717 44 1 5.8146 3.0578 -8.3245 45 1 5.8456 2.6713 -11.6376 46 1 7.3796 3.6651 -6.2120 47 1 5.9508 2.6588 -5.8711 48 1 6.4608 2.3765 -3.4476 49 1 8.0069 3.1796 -3.8121 50 1 6.9790 3.7855 -2.4913 51 1 2.0927 1.5597 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044660404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = -2.645079 kcal Electronic energy + Delta-G solvation = -28385.766208 eV Core-core repulsion = 24670.912832 eV Total energy + Delta-G solvation = -3714.853376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57496 -39.41855 -37.35307 -34.70206 -34.47969 -33.25013 -31.95667 -31.88815 -29.70106 -29.32309 -27.68322 -26.84230 -24.28707 -24.12125 -22.91418 -22.60314 -21.67680 -20.53982 -20.01428 -18.77531 -17.15118 -16.68879 -16.65561 -16.01155 -15.86790 -15.24356 -14.96397 -14.83262 -14.10465 -13.97361 -13.91253 -13.74770 -13.64267 -13.43578 -13.20280 -13.11677 -12.95434 -12.68249 -12.22287 -12.20005 -12.05968 -11.89285 -11.88153 -11.56866 -11.47274 -11.32474 -11.00228 -10.94032 -10.92368 -10.84524 -10.74855 -10.45147 -10.22606 -9.84584 -9.72779 -9.04704 -8.94044 -8.82661 -8.64700 -8.36869 -7.00306 -5.80112 -3.09383 1.23280 1.31139 2.73323 3.09062 3.40211 3.45658 3.48167 3.68173 4.48559 4.53946 4.55075 4.68808 4.69902 4.93266 4.98680 5.04890 5.09991 5.13242 5.18472 5.27549 5.31229 5.34047 5.37335 5.41519 5.47786 5.49100 5.56457 5.62781 5.67066 5.68055 5.83516 5.88639 5.92148 5.97360 6.00926 6.03283 6.14823 6.26706 6.34767 6.37638 6.45853 6.46456 6.49883 6.52326 6.54847 6.77102 6.90655 6.91422 7.04095 7.58563 7.66236 8.33409 8.38093 9.49362 10.07049 10.41685 11.42505 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002384 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.821345 B =11740.051918 C =12285.789645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.106 4.106 9 C 0.516 3.484 10 O -0.530 6.530 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.152 4.152 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.135 4.135 26 C 0.147 3.853 27 H 0.069 0.931 28 C -0.132 4.132 29 C -0.101 4.101 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.041 0.959 50 H 0.066 0.934 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 0.275 23.806 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.057 4.057 8 C -0.146 4.146 9 C 0.303 3.697 10 O -0.408 6.408 11 N -0.339 5.339 12 C -0.016 4.016 13 C -0.193 4.193 14 C 0.069 3.931 15 H 0.065 0.935 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.174 4.174 26 C 0.044 3.956 27 H 0.087 0.913 28 C -0.190 4.190 29 C -0.119 4.119 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.256 0.060 24.013 25.393 hybrid contribution -0.160 0.369 -1.162 1.229 sum -8.416 0.429 22.852 24.356 Atomic orbital electron populations 1.21745 0.94762 1.01649 1.02163 1.20546 0.96107 0.92763 1.02899 1.19823 0.99143 0.96113 0.93083 1.20962 1.00631 0.95018 0.97324 1.21040 0.99763 0.94974 0.97766 1.20932 0.99957 0.99955 0.91994 1.19287 0.98506 0.94282 0.93661 1.20788 0.95588 1.02233 0.96000 1.20398 0.89137 0.79431 0.80692 1.90764 1.56941 1.38278 1.54767 1.48233 1.10120 1.54785 1.20714 1.21780 0.92894 0.95865 0.91087 1.22599 1.01879 1.01230 0.93578 1.20157 0.91382 0.96028 0.85543 0.93494 1.42443 1.84506 1.10343 0.99136 1.19273 1.40155 0.92342 0.85238 0.91122 1.24759 1.02666 0.96104 0.97459 1.69672 1.55466 1.12024 1.20853 0.86139 0.77356 0.79631 0.83182 1.20554 1.21872 1.21894 1.22291 1.01547 1.00207 0.93315 1.21299 0.80005 0.99288 0.94969 0.91311 1.22184 0.98034 1.00571 0.98177 1.20851 0.99538 0.93936 0.97622 0.92495 0.92452 0.92662 0.91143 0.90966 0.86461 0.86271 0.86442 0.88077 0.88178 0.90483 0.91516 0.90594 0.92232 0.78269 0.93533 0.90724 0.91838 0.91148 0.94068 0.91523 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.90 37.16 0.37 -0.68 16 2 C -0.09 -0.71 6.07 -27.88 -0.17 -0.88 16 3 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.18 9.70 -39.59 -0.38 -1.57 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 6 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 7 C -0.06 -0.65 4.37 -104.62 -0.46 -1.10 16 8 C -0.11 -1.10 4.23 -29.04 -0.12 -1.23 16 9 C 0.52 7.01 7.60 -10.99 -0.08 6.93 16 10 O -0.53 -8.69 11.43 5.56 0.06 -8.63 16 11 N -0.60 -8.17 2.98 -165.48 -0.49 -8.66 16 12 C 0.11 1.31 6.30 -3.93 -0.02 1.29 16 13 C -0.15 -2.46 5.64 -26.83 -0.15 -2.61 16 14 C 0.18 3.38 2.73 -67.89 -0.19 3.19 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -17.63 5.12 -53.38 -0.27 -17.91 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 26 C 0.15 2.14 3.49 -67.60 -0.24 1.90 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.13 -1.95 7.60 37.16 0.28 -1.66 16 29 C -0.10 -1.15 9.36 -39.58 -0.37 -1.52 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.10 0.93 7.41 -51.93 -0.39 0.54 16 39 H 0.10 0.83 8.06 -51.93 -0.42 0.41 16 40 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 51 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -31.50 402.37 -11.02 -42.52 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.86 Total: 8.66 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.23 Total: -11.88 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.04 Total: -53.71 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.06 Total: -8.63 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.50 -11.02 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.879 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds