Wall clock time and date at job start Tue Mar 31 2020 16:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.47036 * 2 1 4 4 C 1.38249 * 120.00356 * 89.99714 * 3 2 1 5 5 C 1.38213 * 120.00391 * 180.02562 * 4 3 2 6 6 C 1.38263 * 119.99553 * 359.95138 * 5 4 3 7 7 C 1.38214 * 119.99906 * 0.02925 * 6 5 4 8 8 C 1.50704 * 119.99832 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47173 * 89.99637 * 8 7 6 10 10 O 1.21276 * 120.00464 * 359.97438 * 9 8 7 11 11 N 1.34784 * 120.00026 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62598 * 354.66421 * 11 9 8 13 13 C 1.52766 * 109.00664 * 233.58312 * 12 11 9 14 14 C 1.53039 * 109.38336 * 305.59069 * 13 12 11 15 15 H 1.08998 * 109.44657 * 301.22797 * 14 13 12 16 16 N 1.46503 * 109.45883 * 181.25860 * 14 13 12 17 17 C 1.36936 * 119.99500 * 84.93212 * 16 14 13 18 18 H 1.08001 * 120.00472 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99649 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46708 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47483 * 119.99805 * 21 19 17 24 24 H 1.48505 * 109.46823 * 239.99927 * 21 19 17 25 25 C 1.53040 * 109.53933 * 61.23829 * 14 13 12 26 26 C 1.46921 * 120.63055 * 174.94574 * 11 9 8 27 27 H 1.09005 * 109.58446 * 246.29491 * 26 11 9 28 28 C 1.53000 * 109.59014 * 6.57854 * 26 11 9 29 29 C 1.38213 * 119.99351 * 269.72522 * 3 2 1 30 30 H 1.08999 * 109.46698 * 60.00170 * 1 2 3 31 31 H 1.08998 * 109.46664 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46777 * 300.00517 * 1 2 3 33 33 H 1.08998 * 109.46775 * 119.99278 * 2 1 3 34 34 H 1.08997 * 109.47456 * 239.99762 * 2 1 3 35 35 H 1.08006 * 119.99920 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00444 * 179.97438 * 5 4 3 37 37 H 1.07996 * 119.99941 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47047 * 209.99913 * 8 7 6 39 39 H 1.09003 * 109.47037 * 329.99212 * 8 7 6 40 40 H 1.08998 * 109.59029 * 353.42111 * 12 11 9 41 41 H 1.09006 * 109.58337 * 113.84562 * 12 11 9 42 42 H 1.09000 * 109.56148 * 185.55787 * 13 12 11 43 43 H 1.08998 * 109.38466 * 65.51719 * 13 12 11 44 44 H 0.96994 * 120.00147 * 264.93556 * 16 14 13 45 45 H 0.96995 * 120.00131 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.49793 * 178.68067 * 25 14 13 47 47 H 1.09000 * 109.49598 * 58.58526 * 25 14 13 48 48 H 1.09003 * 109.46734 * 55.67218 * 28 26 11 49 49 H 1.08994 * 109.47236 * 175.67489 * 28 26 11 50 50 H 1.08996 * 109.47367 * 295.67671 * 28 26 11 51 51 H 1.08000 * 120.00847 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0727 1.1972 5 6 2.7229 3.3760 1.1972 6 6 2.9539 4.0275 -0.0002 7 6 2.7239 3.3757 -1.1971 8 6 2.9751 4.0860 -2.5023 9 6 4.3985 3.8498 -2.9370 10 8 5.1365 3.1718 -2.2541 11 7 4.8517 4.3928 -4.0843 12 6 3.9408 5.1191 -4.9797 13 6 4.0454 4.5260 -6.3836 14 6 5.5087 4.5364 -6.8317 15 1 5.8845 5.5595 -6.8200 16 7 5.6071 3.9957 -8.1897 17 6 5.4061 4.8144 -9.2688 18 1 5.1746 5.8586 -9.1188 19 6 5.4988 4.3020 -10.5556 20 7 5.7804 3.0293 -10.7384 21 14 5.2253 5.4189 -12.0277 22 1 4.9259 6.7949 -11.5561 23 1 6.4492 5.4386 -12.8684 24 1 4.0826 4.9110 -12.8288 25 6 6.3419 3.6762 -5.8788 26 6 6.2645 4.2644 -4.4664 27 1 6.7379 5.2462 -4.4508 28 6 6.9792 3.3347 -3.4837 29 6 2.2681 2.0704 -1.1970 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 2.0823 1.5637 2.1326 36 1 2.9025 3.8853 2.1325 37 1 3.3130 5.0460 -0.0003 38 1 2.2946 3.7016 -3.2620 39 1 2.8075 5.1552 -2.3721 40 1 2.9173 5.0205 -4.6181 41 1 4.2203 6.1723 -5.0092 42 1 3.4487 5.1199 -7.0760 43 1 3.6758 3.5007 -6.3717 44 1 5.8146 3.0578 -8.3245 45 1 5.8456 2.6713 -11.6376 46 1 7.3796 3.6651 -6.2120 47 1 5.9508 2.6588 -5.8711 48 1 6.4608 2.3765 -3.4476 49 1 8.0069 3.1796 -3.8121 50 1 6.9790 3.7855 -2.4913 51 1 2.0927 1.5597 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044660404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:23 Heat of formation + Delta-G solvation = -18.633481 kcal Electronic energy + Delta-G solvation = -28386.459517 eV Core-core repulsion = 24670.912832 eV Total energy + Delta-G solvation = -3715.546685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.64105 -40.25120 -38.64766 -36.15328 -35.42698 -34.26441 -33.69725 -32.83277 -31.03137 -30.35926 -28.75580 -28.00095 -26.00680 -24.78814 -24.39190 -23.58458 -22.61778 -21.67209 -21.17766 -19.90413 -19.08565 -17.75623 -17.44154 -16.98179 -16.84337 -16.70667 -16.14789 -15.84366 -15.49972 -15.43620 -14.96811 -14.82295 -14.70606 -14.49692 -14.42087 -14.01403 -13.95419 -13.72729 -13.44004 -13.34639 -13.07829 -12.96719 -12.89122 -12.81191 -12.62766 -12.58216 -12.54399 -12.11534 -12.10718 -12.02696 -11.92667 -11.70558 -11.66416 -11.61361 -11.33490 -10.89707 -10.10086 -9.63503 -9.53438 -9.44426 -9.00599 -7.92999 -5.21794 0.45814 0.54160 1.48464 1.48852 1.58757 1.69537 2.05250 2.56951 2.89054 3.40503 3.66019 3.70815 3.74763 3.84539 3.97682 4.02657 4.08081 4.14729 4.25048 4.27826 4.30178 4.36191 4.39524 4.50813 4.58460 4.60429 4.61565 4.64110 4.71181 4.72774 4.79358 4.81995 4.85816 5.02063 5.03536 5.08667 5.09104 5.16155 5.22156 5.24473 5.28297 5.38063 5.43183 5.51532 5.56210 5.60666 5.69973 5.73693 5.76491 6.17132 6.28721 6.52777 7.27723 7.34493 8.10343 8.33249 9.31009 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002384 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.821345 B =11740.051918 C =12285.789645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.072 4.072 8 C -0.100 4.100 9 C 0.513 3.487 10 O -0.562 6.562 11 N -0.606 5.606 12 C 0.114 3.886 13 C -0.142 4.142 14 C 0.173 3.827 15 H 0.049 0.951 16 N -0.739 5.739 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.297 1.297 24 H -0.296 1.296 25 C -0.123 4.123 26 C 0.152 3.848 27 H 0.085 0.915 28 C -0.120 4.120 29 C -0.123 4.123 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 2.183 25.538 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.072 4.072 8 C -0.139 4.139 9 C 0.302 3.698 10 O -0.441 6.441 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.183 4.183 14 C 0.065 3.935 15 H 0.067 0.933 16 N -0.378 5.378 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.225 1.225 24 H -0.224 1.224 25 C -0.162 4.162 26 C 0.049 3.951 27 H 0.103 0.897 28 C -0.177 4.177 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.200 0.800 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.460 2.015 25.792 27.546 hybrid contribution 0.231 -0.257 -1.589 1.626 sum -9.228 1.759 24.203 25.963 Atomic orbital electron populations 1.21713 0.93835 1.02356 1.02005 1.20581 0.96884 0.91793 1.03072 1.20099 0.98954 0.96984 0.93121 1.21264 1.00252 0.95277 0.97915 1.21376 0.99056 0.95131 0.98530 1.21192 1.00096 1.00736 0.92113 1.19464 0.98904 0.94447 0.94386 1.20811 0.93209 1.03971 0.95914 1.20958 0.90204 0.78436 0.80160 1.90756 1.58160 1.39487 1.55687 1.48289 1.09722 1.54934 1.21035 1.21830 0.94597 0.96192 0.88185 1.22379 0.99100 1.00601 0.96181 1.20417 0.93568 0.96020 0.83490 0.93265 1.42688 1.84640 1.09522 1.00950 1.19674 1.37757 0.92894 0.85981 0.90144 1.25568 1.03895 0.97441 1.00325 1.69835 1.57867 1.13918 1.20842 0.85101 0.76522 0.78691 0.79644 1.18605 1.22489 1.22357 1.22142 1.00512 0.99056 0.94506 1.21203 0.81208 0.99670 0.93051 0.89736 1.22016 0.98236 0.99414 0.98030 1.21012 1.00586 0.94459 0.98006 0.93158 0.91317 0.92276 0.90165 0.91585 0.84558 0.84149 0.85165 0.86759 0.85390 0.87120 0.89468 0.91348 0.93822 0.79982 0.94226 0.91522 0.93526 0.93325 0.93267 0.91855 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.90 71.98 0.71 -1.16 16 2 C -0.09 -1.36 6.07 29.85 0.18 -1.18 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 5 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 6 C -0.12 -2.41 9.70 22.27 0.22 -2.20 16 7 C -0.07 -1.52 4.37 -19.86 -0.09 -1.61 16 8 C -0.10 -1.82 4.23 29.10 0.12 -1.70 16 9 C 0.51 13.06 7.60 87.65 0.67 13.73 16 10 O -0.56 -18.04 11.43 -3.02 -0.03 -18.08 16 11 N -0.61 -15.13 2.98 -795.84 -2.37 -17.50 16 12 C 0.11 2.45 6.30 86.22 0.54 3.00 16 13 C -0.14 -4.40 5.64 30.53 0.17 -4.23 16 14 C 0.17 6.44 2.73 45.02 0.12 6.56 16 15 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 16 N -0.74 -36.41 5.12 -322.80 -1.65 -38.06 16 17 C -0.23 -12.42 9.93 84.04 0.83 -11.58 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 20 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 21 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 C -0.12 -4.11 4.84 30.67 0.15 -3.96 16 26 C 0.15 4.22 3.49 44.98 0.16 4.38 16 27 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 28 C -0.12 -3.46 7.60 71.98 0.55 -2.92 16 29 C -0.12 -2.72 9.36 22.27 0.21 -2.51 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 35 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.11 1.79 7.41 -2.39 -0.02 1.77 16 39 H 0.13 1.62 8.06 -2.39 -0.02 1.60 16 40 H 0.11 1.70 5.96 -2.39 -0.01 1.68 16 41 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 44 H 0.37 20.07 7.80 -92.71 -0.72 19.35 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.05 1.61 6.73 -2.39 -0.02 1.60 16 49 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.89 6.76 -2.39 -0.02 1.87 16 51 H 0.11 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.16 402.37 3.78 -65.38 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.17 Total: 35.61 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 5.35 Total: -15.47 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.74 Total: -114.92 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.03 Total: -18.08 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.16 3.78 -65.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds