Wall clock time and date at job start Tue Mar 31 2020 16:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46904 * 2 1 4 4 C 1.38241 * 120.00234 * 90.00288 * 3 2 1 5 5 C 1.38225 * 120.00209 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00314 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00331 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47463 * 89.99739 * 7 6 5 9 9 O 1.21276 * 119.99784 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63243 * 354.21724 * 10 8 7 12 12 C 1.53187 * 108.77287 * 126.36949 * 11 10 8 13 13 C 1.53039 * 109.31604 * 54.63375 * 12 11 10 14 14 H 1.09007 * 109.45963 * 178.62303 * 13 12 11 15 15 N 1.46500 * 109.46062 * 58.65373 * 13 12 11 16 16 C 1.36937 * 120.00083 * 85.00143 * 15 13 12 17 17 H 1.08007 * 119.99867 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00254 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00276 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46842 * 89.99453 * 20 18 16 22 22 H 1.48496 * 109.47191 * 329.99706 * 20 18 16 23 23 H 1.48495 * 109.47174 * 209.99485 * 20 18 16 24 24 C 1.53033 * 109.53842 * 298.63294 * 13 12 11 25 25 C 1.46933 * 120.62672 * 174.19104 * 10 8 7 26 26 H 1.08998 * 109.58046 * 113.84728 * 25 10 8 27 27 C 1.52994 * 109.58561 * 353.42177 * 25 10 8 28 28 C 1.38237 * 119.99764 * 0.27343 * 6 5 4 29 29 C 1.38235 * 119.99906 * 359.52128 * 28 6 5 30 30 H 1.08992 * 109.47191 * 59.99943 * 1 2 3 31 31 H 1.09004 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46796 * 299.99599 * 1 2 3 33 33 H 1.08997 * 109.46929 * 239.99868 * 2 1 3 34 34 H 1.09002 * 109.47117 * 120.00209 * 2 1 3 35 35 H 1.08005 * 119.99335 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.99944 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.47355 * 329.99472 * 7 6 5 38 38 H 1.09002 * 109.47180 * 210.00278 * 7 6 5 39 39 H 1.08996 * 109.58497 * 6.57722 * 11 10 8 40 40 H 1.08996 * 109.58235 * 246.15234 * 11 10 8 41 41 H 1.09000 * 109.49672 * 294.67889 * 12 11 10 42 42 H 1.09007 * 109.49388 * 174.58358 * 12 11 10 43 43 H 0.97001 * 120.00018 * 264.99965 * 15 13 12 44 44 H 0.96997 * 120.00115 * 0.02562 * 19 18 16 45 45 H 1.09003 * 109.49920 * 181.31624 * 24 13 12 46 46 H 1.09006 * 109.49920 * 301.41331 * 24 13 12 47 47 H 1.09001 * 109.47371 * 65.78553 * 27 25 10 48 48 H 1.09007 * 109.46779 * 185.78706 * 27 25 10 49 49 H 1.09001 * 109.46836 * 305.78205 * 27 25 10 50 50 H 1.07997 * 120.00357 * 179.72705 * 28 6 5 51 51 H 1.07998 * 120.00125 * 180.27294 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9553 4.0269 0.0001 7 6 3.4587 5.4473 0.0000 8 6 4.9657 5.4463 0.0007 9 8 5.5714 4.3956 0.0006 10 7 5.6404 6.6130 0.0002 11 6 4.9263 7.8907 -0.1282 12 6 5.3322 8.8014 1.0347 13 6 6.8565 8.9337 1.0659 14 1 7.1466 9.6009 1.8776 15 7 7.3249 9.4835 -0.2087 16 6 7.3425 10.8386 -0.4047 17 1 7.0107 11.5022 0.3803 18 6 7.7858 11.3596 -1.6125 19 7 8.1896 10.5510 -2.5693 20 14 7.8091 13.2082 -1.8801 21 1 9.1205 13.7544 -1.4476 22 1 6.7243 13.8372 -1.0848 23 1 7.6012 13.5025 -3.3207 24 6 7.4853 7.5564 1.2889 25 6 7.1039 6.6315 0.1288 26 1 7.5472 7.0025 -0.7953 27 6 7.6117 5.2164 0.4127 28 6 2.7200 3.3770 -1.1971 29 6 2.2628 2.0725 -1.1971 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9044 3.8845 2.1325 37 1 3.0953 5.9616 0.8898 38 1 3.0960 5.9613 -0.8901 39 1 3.8513 7.7133 -0.0956 40 1 5.1921 8.3644 -1.0732 41 1 4.9852 8.3694 1.9734 42 1 4.8843 9.7859 0.8993 43 1 7.6225 8.8876 -0.9138 44 1 8.1772 9.5911 -2.4306 45 1 8.5700 7.6547 1.3343 46 1 7.1181 7.1361 2.2252 47 1 7.4193 4.5811 -0.4519 48 1 8.6834 5.2477 0.6093 49 1 7.0943 4.8125 1.2828 50 1 2.8965 3.8873 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044761894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:27 Heat of formation + Delta-G solvation = -0.448441 kcal Electronic energy + Delta-G solvation = -28703.510754 eV Core-core repulsion = 24988.752631 eV Total energy + Delta-G solvation = -3714.758123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52001 -39.40763 -37.49900 -34.87277 -34.38404 -32.91685 -32.05241 -31.01454 -30.99270 -28.86988 -27.45357 -26.76963 -24.14011 -23.53443 -23.40294 -22.81884 -21.87751 -20.74828 -19.89860 -18.41079 -17.27635 -16.64359 -16.40655 -16.03864 -15.70197 -15.34728 -15.06555 -14.61534 -14.15171 -13.99114 -13.90565 -13.79437 -13.62918 -13.53686 -13.33906 -13.24363 -12.92480 -12.88206 -12.19577 -12.17851 -11.95366 -11.91144 -11.79610 -11.56240 -11.37875 -11.27534 -10.98252 -10.94747 -10.84483 -10.69715 -10.57540 -10.34559 -10.19215 -10.01969 -9.20166 -8.97782 -8.95817 -8.92656 -8.51728 -8.20079 -7.07907 -6.13254 -3.13964 1.24085 1.36909 2.82407 3.19697 3.49026 3.53275 3.67259 3.72483 4.51127 4.62602 4.63777 4.70153 4.78040 4.87256 4.92559 5.09300 5.16531 5.18841 5.23989 5.28294 5.32947 5.37173 5.42823 5.45439 5.51158 5.56772 5.61359 5.63674 5.66476 5.71247 5.79909 5.86647 5.93021 5.98346 6.00977 6.03943 6.10007 6.21217 6.33236 6.35404 6.42040 6.52022 6.53924 6.55108 6.65223 6.67802 6.74232 6.94156 7.00835 7.71913 7.78011 8.43031 8.71624 9.18255 10.04717 10.20041 11.34524 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.002399 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.997297 B =11666.667517 C =11968.902350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.062 4.062 7 C -0.106 4.106 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.149 4.149 13 C 0.179 3.821 14 H 0.051 0.949 15 N -0.733 5.733 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.943 5.943 20 Si 1.081 2.919 21 H -0.296 1.296 22 H -0.295 1.295 23 H -0.289 1.289 24 C -0.135 4.135 25 C 0.147 3.853 26 H 0.073 0.927 27 C -0.134 4.134 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.366 0.634 44 H 0.254 0.746 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.059 0.941 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 -16.777 7.336 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.062 4.062 7 C -0.145 4.145 8 C 0.302 3.698 9 O -0.412 6.412 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.190 4.190 13 C 0.069 3.931 14 H 0.069 0.931 15 N -0.377 5.377 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.589 5.589 20 Si 0.913 3.087 21 H -0.224 1.224 22 H -0.222 1.222 23 H -0.215 1.215 24 C -0.174 4.174 25 C 0.045 3.955 26 H 0.091 0.909 27 C -0.191 4.191 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.664 -15.943 6.401 21.951 hybrid contribution -0.282 -1.035 0.952 1.434 sum -13.946 -16.978 7.353 23.169 Atomic orbital electron populations 1.21747 0.94835 1.01538 1.02210 1.20528 0.96054 0.92864 1.02736 1.19844 0.99554 0.96071 0.93269 1.20920 1.00486 0.94770 0.97374 1.20932 0.98918 0.94859 0.97346 1.19297 0.98667 0.94777 0.93507 1.20769 0.93591 0.95201 1.04972 1.20387 0.89248 0.83568 0.76558 1.90736 1.68903 1.31657 1.49913 1.48210 1.07359 1.06102 1.71784 1.21721 0.95140 0.83079 1.00913 1.22493 1.00731 0.99343 0.96416 1.20122 0.90798 0.91951 0.90258 0.93078 1.42518 1.78064 1.04565 1.12529 1.20056 1.41370 0.83226 1.01458 0.91755 1.25734 0.99300 1.06802 0.92421 1.70861 1.50122 1.03768 1.34112 0.83208 0.75734 0.74097 0.75706 1.22394 1.22204 1.21464 1.22264 1.01301 0.96242 0.97545 1.21193 0.78907 0.96608 0.98827 0.90915 1.22181 0.98466 0.94759 1.03714 1.20969 0.98741 0.94858 0.97445 1.20935 1.00386 0.94743 0.97410 0.92562 0.92537 0.92595 0.91150 0.91177 0.86380 0.86396 0.88238 0.88210 0.91010 0.90096 0.93206 0.90766 0.79911 0.93447 0.90884 0.92009 0.90589 0.94086 0.92160 0.86278 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.09 -0.90 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.25 9.70 -39.59 -0.38 -1.63 16 5 C -0.10 -1.19 9.70 -39.59 -0.38 -1.57 16 6 C -0.06 -0.76 4.37 -104.63 -0.46 -1.22 16 7 C -0.11 -1.24 4.19 -29.04 -0.12 -1.36 16 8 C 0.51 7.81 7.49 -10.98 -0.08 7.73 16 9 O -0.53 -9.45 11.60 5.56 0.06 -9.38 16 10 N -0.60 -9.42 2.97 -165.22 -0.49 -9.91 16 11 C 0.11 1.75 6.09 -3.71 -0.02 1.72 16 12 C -0.15 -2.41 5.78 -26.61 -0.15 -2.56 16 13 C 0.18 3.37 3.10 -67.89 -0.21 3.16 16 14 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 15 N -0.73 -17.13 4.31 -53.39 -0.23 -17.36 16 16 C -0.33 -8.80 9.93 -15.06 -0.15 -8.95 16 17 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 18 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 19 N -0.94 -28.42 13.70 55.49 0.76 -27.66 16 20 Si 1.08 25.35 29.92 -169.99 -5.09 20.26 16 21 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.13 -2.23 5.07 -26.62 -0.13 -2.36 16 25 C 0.15 2.48 3.20 -67.60 -0.22 2.26 16 26 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 27 C -0.13 -2.16 7.61 37.15 0.28 -1.88 16 28 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 29 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 38 H 0.10 1.04 7.65 -51.93 -0.40 0.64 16 39 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 40 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 43 H 0.37 8.98 4.89 -40.82 -0.20 8.78 16 44 H 0.25 7.57 6.77 -40.82 -0.28 7.29 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 50 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -31.37 396.48 -10.82 -42.19 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.58 Total: 10.03 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.24 Total: -14.15 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.04 Total: -54.93 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.06 Total: -9.38 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.37 -10.82 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.746 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds