Wall clock time and date at job start Tue Mar 31 2020 16:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46904 * 2 1 4 4 C 1.38241 * 120.00234 * 90.00288 * 3 2 1 5 5 C 1.38225 * 120.00209 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00314 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00331 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47463 * 89.99739 * 7 6 5 9 9 O 1.21276 * 119.99784 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63243 * 354.21724 * 10 8 7 12 12 C 1.53187 * 108.77287 * 126.36949 * 11 10 8 13 13 C 1.53039 * 109.31604 * 54.63375 * 12 11 10 14 14 H 1.09007 * 109.45963 * 178.62303 * 13 12 11 15 15 N 1.46500 * 109.46062 * 58.65373 * 13 12 11 16 16 C 1.36937 * 120.00083 * 85.00143 * 15 13 12 17 17 H 1.08007 * 119.99867 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00254 * 180.02562 * 16 15 13 19 19 N 1.31621 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00276 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46842 * 89.99453 * 20 18 16 22 22 H 1.48496 * 109.47191 * 329.99706 * 20 18 16 23 23 H 1.48495 * 109.47174 * 209.99485 * 20 18 16 24 24 C 1.53033 * 109.53842 * 298.63294 * 13 12 11 25 25 C 1.46933 * 120.62672 * 174.19104 * 10 8 7 26 26 H 1.08998 * 109.58046 * 113.84728 * 25 10 8 27 27 C 1.52994 * 109.58561 * 353.42177 * 25 10 8 28 28 C 1.38237 * 119.99764 * 0.27343 * 6 5 4 29 29 C 1.38235 * 119.99906 * 359.52128 * 28 6 5 30 30 H 1.08992 * 109.47191 * 59.99943 * 1 2 3 31 31 H 1.09004 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46796 * 299.99599 * 1 2 3 33 33 H 1.08997 * 109.46929 * 239.99868 * 2 1 3 34 34 H 1.09002 * 109.47117 * 120.00209 * 2 1 3 35 35 H 1.08005 * 119.99335 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.99944 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.47355 * 329.99472 * 7 6 5 38 38 H 1.09002 * 109.47180 * 210.00278 * 7 6 5 39 39 H 1.08996 * 109.58497 * 6.57722 * 11 10 8 40 40 H 1.08996 * 109.58235 * 246.15234 * 11 10 8 41 41 H 1.09000 * 109.49672 * 294.67889 * 12 11 10 42 42 H 1.09007 * 109.49388 * 174.58358 * 12 11 10 43 43 H 0.97001 * 120.00018 * 264.99965 * 15 13 12 44 44 H 0.96997 * 120.00115 * 0.02562 * 19 18 16 45 45 H 1.09003 * 109.49920 * 181.31624 * 24 13 12 46 46 H 1.09006 * 109.49920 * 301.41331 * 24 13 12 47 47 H 1.09001 * 109.47371 * 65.78553 * 27 25 10 48 48 H 1.09007 * 109.46779 * 185.78706 * 27 25 10 49 49 H 1.09001 * 109.46836 * 305.78205 * 27 25 10 50 50 H 1.07997 * 120.00357 * 179.72705 * 28 6 5 51 51 H 1.07998 * 120.00125 * 180.27294 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9553 4.0269 0.0001 7 6 3.4587 5.4473 0.0000 8 6 4.9657 5.4463 0.0007 9 8 5.5714 4.3956 0.0006 10 7 5.6404 6.6130 0.0002 11 6 4.9263 7.8907 -0.1282 12 6 5.3322 8.8014 1.0347 13 6 6.8565 8.9337 1.0659 14 1 7.1466 9.6009 1.8776 15 7 7.3249 9.4835 -0.2087 16 6 7.3425 10.8386 -0.4047 17 1 7.0107 11.5022 0.3803 18 6 7.7858 11.3596 -1.6125 19 7 8.1896 10.5510 -2.5693 20 14 7.8091 13.2082 -1.8801 21 1 9.1205 13.7544 -1.4476 22 1 6.7243 13.8372 -1.0848 23 1 7.6012 13.5025 -3.3207 24 6 7.4853 7.5564 1.2889 25 6 7.1039 6.6315 0.1288 26 1 7.5472 7.0025 -0.7953 27 6 7.6117 5.2164 0.4127 28 6 2.7200 3.3770 -1.1971 29 6 2.2628 2.0725 -1.1971 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9044 3.8845 2.1325 37 1 3.0953 5.9616 0.8898 38 1 3.0960 5.9613 -0.8901 39 1 3.8513 7.7133 -0.0956 40 1 5.1921 8.3644 -1.0732 41 1 4.9852 8.3694 1.9734 42 1 4.8843 9.7859 0.8993 43 1 7.6225 8.8876 -0.9138 44 1 8.1772 9.5911 -2.4306 45 1 8.5700 7.6547 1.3343 46 1 7.1181 7.1361 2.2252 47 1 7.4193 4.5811 -0.4519 48 1 8.6834 5.2477 0.6093 49 1 7.0943 4.8125 1.2828 50 1 2.8965 3.8873 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044761894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:26 Heat of formation + Delta-G solvation = -15.788968 kcal Electronic energy + Delta-G solvation = -28704.175969 eV Core-core repulsion = 24988.752631 eV Total energy + Delta-G solvation = -3715.423338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73077 -40.30931 -38.86804 -36.13493 -35.63611 -34.16509 -33.72289 -31.90000 -31.80345 -30.59371 -28.60204 -27.89319 -25.59057 -25.32709 -24.33639 -23.63549 -23.05776 -21.72281 -21.11637 -19.84796 -19.15853 -17.84691 -17.43129 -17.15796 -16.72623 -16.64666 -16.16911 -15.94177 -15.65843 -15.42491 -15.04810 -14.87502 -14.68875 -14.52679 -14.50382 -14.39282 -14.13258 -13.71433 -13.43040 -13.40276 -13.22721 -12.89114 -12.87220 -12.73600 -12.62141 -12.51430 -12.23037 -12.08252 -12.03768 -11.92357 -11.82871 -11.68721 -11.65225 -11.64901 -11.16236 -10.89871 -10.14611 -9.78954 -9.55774 -9.38682 -9.06149 -8.33180 -5.26970 0.40346 0.53685 1.60025 1.64168 1.69835 1.83525 1.99795 2.73842 2.85487 3.44655 3.61654 3.68049 3.73202 3.88076 3.91763 3.93360 3.99398 4.01775 4.14686 4.18630 4.22079 4.28716 4.42293 4.45378 4.49827 4.55877 4.58386 4.59956 4.68549 4.73654 4.76637 4.77641 4.82907 4.99249 5.03354 5.05521 5.08835 5.16040 5.17820 5.20462 5.23448 5.26726 5.33781 5.38789 5.52603 5.66910 5.68117 5.69632 5.74285 6.14094 6.49992 6.53554 7.13823 7.21926 8.04781 8.17147 9.18102 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.002399 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.997297 B =11666.667517 C =11968.902350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.098 4.098 8 C 0.513 3.487 9 O -0.561 6.561 10 N -0.602 5.602 11 C 0.120 3.880 12 C -0.139 4.139 13 C 0.170 3.830 14 H 0.045 0.955 15 N -0.743 5.743 16 C -0.318 4.318 17 H 0.068 0.932 18 C -0.108 4.108 19 N -0.979 5.979 20 Si 1.127 2.873 21 H -0.290 1.290 22 H -0.271 1.271 23 H -0.298 1.298 24 C -0.122 4.122 25 C 0.148 3.852 26 H 0.042 0.958 27 C -0.119 4.119 28 C -0.120 4.120 29 C -0.128 4.128 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.358 0.642 44 H 0.241 0.759 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.059 0.941 50 H 0.121 0.879 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 -17.325 9.141 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.132 4.132 6 C -0.080 4.080 7 C -0.137 4.137 8 C 0.302 3.698 9 O -0.441 6.441 10 N -0.335 5.335 11 C -0.002 4.002 12 C -0.180 4.180 13 C 0.061 3.939 14 H 0.063 0.937 15 N -0.386 5.386 16 C -0.449 4.449 17 H 0.086 0.914 18 C -0.299 4.299 19 N -0.628 5.628 20 Si 0.953 3.047 21 H -0.217 1.217 22 H -0.196 1.196 23 H -0.225 1.225 24 C -0.161 4.161 25 C 0.045 3.955 26 H 0.060 0.940 27 C -0.176 4.176 28 C -0.138 4.138 29 C -0.146 4.146 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.191 0.809 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.139 0.861 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.586 -16.507 8.264 24.159 hybrid contribution 0.291 -0.976 0.454 1.115 sum -15.295 -17.483 8.718 24.811 Atomic orbital electron populations 1.21722 0.93941 1.02410 1.01941 1.20581 0.96748 0.91388 1.03404 1.20182 0.98752 0.97206 0.92998 1.21221 1.00102 0.94699 0.98359 1.21170 0.98982 0.95424 0.97598 1.19420 0.99537 0.95167 0.93891 1.20776 0.90525 0.95690 1.06741 1.20993 0.90690 0.82704 0.75373 1.90727 1.69898 1.32487 1.50947 1.48232 1.06753 1.06591 1.71956 1.21660 0.97219 0.82563 0.98779 1.22347 0.98045 0.99365 0.98238 1.20388 0.92854 0.92764 0.87856 0.93711 1.42679 1.78393 1.03541 1.13954 1.20369 1.38839 0.84784 1.00941 0.91409 1.27036 0.99933 1.10114 0.92775 1.70974 1.53154 1.03270 1.35392 0.82608 0.76638 0.70123 0.75319 1.21745 1.19602 1.22472 1.22135 1.00810 0.94855 0.98321 1.21050 0.80022 0.96871 0.97565 0.93957 1.22001 0.99027 0.93774 1.02772 1.21165 0.99355 0.95573 0.97671 1.21192 1.00312 0.94629 0.98450 0.92962 0.91112 0.92737 0.90652 0.90370 0.84548 0.85323 0.85804 0.86848 0.87136 0.93700 0.90042 0.91735 0.80892 0.94828 0.91589 0.89678 0.92304 0.93100 0.92226 0.86146 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.90 71.98 0.71 -0.92 16 2 C -0.08 -1.15 6.06 29.85 0.18 -0.97 16 3 C -0.09 -1.74 5.13 -19.86 -0.10 -1.85 16 4 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 5 C -0.11 -2.44 9.70 22.27 0.22 -2.22 16 6 C -0.08 -1.84 4.37 -19.87 -0.09 -1.93 16 7 C -0.10 -2.08 4.19 29.10 0.12 -1.96 16 8 C 0.51 14.89 7.49 87.66 0.66 15.54 16 9 O -0.56 -19.53 11.60 -3.02 -0.04 -19.57 16 10 N -0.60 -18.28 2.97 -795.04 -2.36 -20.64 16 11 C 0.12 3.51 6.09 86.36 0.53 4.04 16 12 C -0.14 -4.23 5.78 30.67 0.18 -4.05 16 13 C 0.17 6.26 3.10 45.02 0.14 6.40 16 14 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 15 N -0.74 -35.18 4.31 -322.82 -1.39 -36.57 16 16 C -0.32 -17.00 9.93 84.03 0.83 -16.16 16 17 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 18 C -0.11 -6.10 5.50 84.86 0.47 -5.63 16 19 N -0.98 -60.68 13.70 21.65 0.30 -60.38 16 20 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 C -0.12 -3.94 5.07 30.67 0.16 -3.78 16 25 C 0.15 4.99 3.20 44.97 0.14 5.14 16 26 H 0.04 1.69 6.64 -2.39 -0.02 1.67 16 27 C -0.12 -3.79 7.61 71.98 0.55 -3.25 16 28 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 29 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.95 8.09 -2.39 -0.02 0.94 16 34 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.12 2.03 7.87 -2.39 -0.02 2.01 16 38 H 0.11 2.10 7.65 -2.39 -0.02 2.08 16 39 H 0.11 2.37 5.93 -2.39 -0.01 2.35 16 40 H 0.04 1.66 7.74 -2.39 -0.02 1.64 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 43 H 0.36 18.22 4.89 -92.71 -0.45 17.77 16 44 H 0.24 15.01 6.77 -92.71 -0.63 14.38 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 47 H 0.06 2.09 6.54 -2.39 -0.02 2.07 16 48 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.06 1.91 6.96 -2.39 -0.02 1.90 16 50 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 51 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -68.86 396.48 4.49 -64.37 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: 0.59 Total: 38.33 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.34 Total: -18.82 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -3.46 Total: -117.59 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.04 Total: -19.57 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -68.86 4.49 -64.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.583 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds