Wall clock time and date at job start Tue Mar 31 2020 16:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47240 * 2 1 4 4 C 1.38231 * 120.00130 * 89.99838 * 3 2 1 5 5 C 1.38230 * 120.00451 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00266 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47334 * 90.00127 * 7 6 5 9 9 O 1.21283 * 119.99946 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00445 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.60024 * 5.68822 * 10 8 7 12 12 C 1.53194 * 108.77134 * 233.57950 * 11 10 8 13 13 C 1.53041 * 109.33692 * 305.41539 * 12 11 10 14 14 H 1.08999 * 109.46328 * 301.34005 * 13 12 11 15 15 N 1.46500 * 109.45984 * 181.36895 * 13 12 11 16 16 C 1.36940 * 120.00091 * 85.00105 * 15 13 12 17 17 H 1.07991 * 119.99766 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99810 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47403 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47310 * 119.99605 * 20 18 16 23 23 H 1.48500 * 109.47184 * 239.99833 * 20 18 16 24 24 C 1.53040 * 109.54041 * 61.34948 * 13 12 11 25 25 C 1.46918 * 120.63138 * 185.71217 * 10 8 7 26 26 H 1.09004 * 109.70413 * 246.24853 * 25 10 8 27 27 C 1.53003 * 109.59132 * 6.59837 * 25 10 8 28 28 C 1.38241 * 119.99657 * 0.25140 * 6 5 4 29 29 C 1.38226 * 119.99828 * 359.49518 * 28 6 5 30 30 H 1.08999 * 109.47063 * 299.99627 * 1 2 3 31 31 H 1.08997 * 109.47358 * 59.99975 * 1 2 3 32 32 H 1.09003 * 109.46673 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47121 * 239.99948 * 2 1 3 34 34 H 1.08997 * 109.47358 * 120.00025 * 2 1 3 35 35 H 1.08009 * 119.99862 * 0.02562 * 4 3 2 36 36 H 1.08005 * 120.00694 * 180.02562 * 5 4 3 37 37 H 1.08993 * 109.47205 * 330.00062 * 7 6 5 38 38 H 1.09000 * 109.47231 * 209.99498 * 7 6 5 39 39 H 1.09001 * 109.56493 * 113.81012 * 11 10 8 40 40 H 1.09001 * 109.62105 * 353.37590 * 11 10 8 41 41 H 1.08994 * 109.49855 * 185.44834 * 12 11 10 42 42 H 1.09005 * 109.49796 * 65.37765 * 12 11 10 43 43 H 0.97004 * 120.00254 * 264.99908 * 15 13 12 44 44 H 0.97000 * 120.00239 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.49794 * 58.58512 * 24 13 12 46 46 H 1.09002 * 109.50261 * 178.64969 * 24 13 12 47 47 H 1.08996 * 109.47599 * 173.75593 * 27 25 10 48 48 H 1.08999 * 109.47313 * 293.76027 * 27 25 10 49 49 H 1.08999 * 109.46664 * 53.75643 * 27 25 10 50 50 H 1.08000 * 119.99709 * 179.73076 * 28 6 5 51 51 H 1.08004 * 119.99831 * 180.24888 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4569 5.4480 0.0000 8 6 4.9638 5.4480 0.0000 9 8 5.5702 4.3977 0.0005 10 7 5.6378 6.6152 0.0006 11 6 4.9220 7.8921 0.1265 12 6 5.3301 8.8027 -1.0359 13 6 6.8544 8.9359 -1.0643 14 1 7.2009 9.3456 -0.1155 15 7 7.2458 9.8324 -2.1549 16 6 7.2623 11.1871 -1.9552 17 1 6.9864 11.5945 -0.9940 18 6 7.6326 12.0365 -2.9888 19 7 7.9683 11.5398 -4.1605 20 14 7.6544 13.8844 -2.7167 21 1 7.2378 14.1845 -1.3233 22 1 9.0273 14.4023 -2.9457 23 1 6.7151 14.5355 -3.6648 24 6 7.4846 7.5589 -1.2852 25 6 7.1015 6.6345 -0.1252 26 1 7.5449 7.0049 0.7990 27 6 7.6108 5.2196 -0.4072 28 6 2.7187 3.3774 -1.1971 29 6 2.2624 2.0727 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0831 1.5632 2.1325 36 1 2.9044 3.8846 2.1325 37 1 3.0935 5.9618 0.8900 38 1 3.0936 5.9618 -0.8900 39 1 5.1852 8.3664 1.0719 40 1 3.8472 7.7143 0.0912 41 1 4.8813 9.7869 -0.9019 42 1 4.9852 8.3703 -1.9752 43 1 7.4932 9.4664 -3.0185 44 1 8.2275 12.1333 -4.8827 45 1 7.1194 7.1378 -2.2219 46 1 8.5692 7.6579 -1.3293 47 1 8.6813 5.2524 -0.6099 48 1 7.4245 4.5866 0.4604 49 1 7.0895 4.8117 -1.2732 50 1 2.8946 3.8880 -2.1324 51 1 2.0819 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044761899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:37 Heat of formation + Delta-G solvation = -3.802925 kcal Electronic energy + Delta-G solvation = -28196.530775 eV Core-core repulsion = 24481.627190 eV Total energy + Delta-G solvation = -3714.903584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56040 -39.41762 -37.36500 -34.90700 -34.48302 -32.96517 -31.93035 -31.06421 -31.02224 -29.28557 -27.44890 -26.81474 -24.33042 -23.60033 -22.92562 -22.84617 -21.78766 -20.66989 -20.06417 -18.83478 -17.14279 -16.72815 -16.46507 -16.05240 -15.75051 -15.28832 -14.90792 -14.82340 -14.04089 -14.01886 -13.90040 -13.74987 -13.65995 -13.55606 -13.34987 -13.15905 -12.94957 -12.70849 -12.24537 -12.22775 -12.03970 -11.85569 -11.81079 -11.59009 -11.41932 -11.34644 -11.00956 -10.97472 -10.94169 -10.85073 -10.74915 -10.45381 -10.23067 -9.85873 -9.73690 -9.01033 -8.98772 -8.94380 -8.56500 -8.37881 -7.00586 -5.80414 -3.09669 1.20724 1.33966 2.73239 3.09470 3.40055 3.45598 3.48011 3.68124 4.47793 4.54469 4.59857 4.65793 4.70232 4.84154 4.89644 5.06859 5.08400 5.14466 5.19324 5.25979 5.30694 5.33479 5.37194 5.41173 5.48306 5.48902 5.56600 5.59636 5.62758 5.68899 5.83234 5.84513 5.90643 5.96818 5.98022 6.02298 6.14518 6.26221 6.30482 6.37354 6.45291 6.48735 6.49425 6.51316 6.55092 6.75505 6.90355 6.91316 7.03630 7.58768 7.66194 8.33534 8.37770 9.49082 10.06719 10.41324 11.42157 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.002158 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.153016 B =12971.381945 C =13271.096829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.064 4.064 7 C -0.106 4.106 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.151 4.151 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.135 4.135 25 C 0.148 3.852 26 H 0.069 0.931 27 C -0.135 4.135 28 C -0.101 4.101 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -19.721 10.759 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.064 4.064 7 C -0.146 4.146 8 C 0.304 3.696 9 O -0.409 6.409 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.068 3.932 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.174 4.174 25 C 0.045 3.955 26 H 0.087 0.913 27 C -0.192 4.192 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.214 -20.077 10.815 26.356 hybrid contribution 0.081 1.258 -0.330 1.303 sum -13.133 -18.819 10.485 25.230 Atomic orbital electron populations 1.21747 0.94817 1.01558 1.02215 1.20532 0.96069 0.92857 1.02751 1.19849 0.99465 0.96079 0.93270 1.20921 1.00493 0.94784 0.97378 1.20929 0.98967 0.94866 0.97313 1.19292 0.98845 0.94758 0.93516 1.20777 0.93468 0.95293 1.05043 1.20408 0.89302 0.83523 0.76380 1.90748 1.68884 1.31688 1.49545 1.48243 1.07412 1.06026 1.72201 1.21875 0.96119 0.83802 0.99905 1.22677 1.00941 0.98859 0.96780 1.20161 0.90930 0.89023 0.93040 0.93477 1.42442 1.80391 1.02636 1.10953 1.19276 1.38140 0.82673 0.96960 0.91107 1.24757 1.02299 0.97996 0.95935 1.69670 1.52069 1.33759 1.02494 0.86136 0.77222 0.85710 0.77219 1.20553 1.21874 1.21906 1.22297 1.01454 0.95878 0.97735 1.21272 0.78669 0.97130 0.98444 0.91310 1.22171 0.98727 0.94517 1.03768 1.20976 0.98664 0.94844 0.97467 1.20944 1.00331 0.94750 0.97433 0.92592 0.92555 0.92528 0.91132 0.91172 0.86377 0.86387 0.88260 0.88004 0.91454 0.90430 0.90648 0.92193 0.78272 0.93538 0.91875 0.90686 0.93893 0.90788 0.91908 0.86240 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.85 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.17 9.70 -39.59 -0.38 -1.56 16 5 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 6 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 7 C -0.11 -1.11 4.19 -29.04 -0.12 -1.23 16 8 C 0.52 7.03 7.49 -10.99 -0.08 6.95 16 9 O -0.53 -8.69 11.60 5.56 0.06 -8.63 16 10 N -0.60 -8.19 2.97 -165.22 -0.49 -8.68 16 11 C 0.11 1.30 6.35 -3.71 -0.02 1.28 16 12 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 13 C 0.18 3.36 2.73 -67.89 -0.19 3.18 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.72 -17.58 5.12 -53.39 -0.27 -17.85 16 16 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.13 -2.24 4.84 -26.61 -0.13 -2.36 16 25 C 0.15 2.15 3.49 -67.60 -0.24 1.91 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.13 -1.98 7.61 37.16 0.28 -1.69 16 28 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 29 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.10 0.83 7.65 -51.93 -0.40 0.43 16 38 H 0.10 0.96 7.86 -51.93 -0.41 0.55 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.75 5.93 -51.93 -0.31 0.45 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.14 6.57 -51.93 -0.34 0.80 16 49 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 50 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 51 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -31.45 402.47 -11.01 -42.46 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.86 Total: 8.46 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -3.22 Total: -11.71 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.04 Total: -53.61 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.06 Total: -8.63 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.45 -11.01 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.659 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds