Wall clock time and date at job start Tue Mar 31 2020 16:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47240 * 2 1 4 4 C 1.38231 * 120.00130 * 89.99838 * 3 2 1 5 5 C 1.38230 * 120.00451 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99944 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00266 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47334 * 90.00127 * 7 6 5 9 9 O 1.21283 * 119.99946 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00445 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.60024 * 5.68822 * 10 8 7 12 12 C 1.53194 * 108.77134 * 233.57950 * 11 10 8 13 13 C 1.53041 * 109.33692 * 305.41539 * 12 11 10 14 14 H 1.08999 * 109.46328 * 301.34005 * 13 12 11 15 15 N 1.46500 * 109.45984 * 181.36895 * 13 12 11 16 16 C 1.36940 * 120.00091 * 85.00105 * 15 13 12 17 17 H 1.07991 * 119.99766 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99810 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47403 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47310 * 119.99605 * 20 18 16 23 23 H 1.48500 * 109.47184 * 239.99833 * 20 18 16 24 24 C 1.53040 * 109.54041 * 61.34948 * 13 12 11 25 25 C 1.46918 * 120.63138 * 185.71217 * 10 8 7 26 26 H 1.09004 * 109.70413 * 246.24853 * 25 10 8 27 27 C 1.53003 * 109.59132 * 6.59837 * 25 10 8 28 28 C 1.38241 * 119.99657 * 0.25140 * 6 5 4 29 29 C 1.38226 * 119.99828 * 359.49518 * 28 6 5 30 30 H 1.08999 * 109.47063 * 299.99627 * 1 2 3 31 31 H 1.08997 * 109.47358 * 59.99975 * 1 2 3 32 32 H 1.09003 * 109.46673 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47121 * 239.99948 * 2 1 3 34 34 H 1.08997 * 109.47358 * 120.00025 * 2 1 3 35 35 H 1.08009 * 119.99862 * 0.02562 * 4 3 2 36 36 H 1.08005 * 120.00694 * 180.02562 * 5 4 3 37 37 H 1.08993 * 109.47205 * 330.00062 * 7 6 5 38 38 H 1.09000 * 109.47231 * 209.99498 * 7 6 5 39 39 H 1.09001 * 109.56493 * 113.81012 * 11 10 8 40 40 H 1.09001 * 109.62105 * 353.37590 * 11 10 8 41 41 H 1.08994 * 109.49855 * 185.44834 * 12 11 10 42 42 H 1.09005 * 109.49796 * 65.37765 * 12 11 10 43 43 H 0.97004 * 120.00254 * 264.99908 * 15 13 12 44 44 H 0.97000 * 120.00239 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.49794 * 58.58512 * 24 13 12 46 46 H 1.09002 * 109.50261 * 178.64969 * 24 13 12 47 47 H 1.08996 * 109.47599 * 173.75593 * 27 25 10 48 48 H 1.08999 * 109.47313 * 293.76027 * 27 25 10 49 49 H 1.08999 * 109.46664 * 53.75643 * 27 25 10 50 50 H 1.08000 * 119.99709 * 179.73076 * 28 6 5 51 51 H 1.08004 * 119.99831 * 180.24888 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4569 5.4480 0.0000 8 6 4.9638 5.4480 0.0000 9 8 5.5702 4.3977 0.0005 10 7 5.6378 6.6152 0.0006 11 6 4.9220 7.8921 0.1265 12 6 5.3301 8.8027 -1.0359 13 6 6.8544 8.9359 -1.0643 14 1 7.2009 9.3456 -0.1155 15 7 7.2458 9.8324 -2.1549 16 6 7.2623 11.1871 -1.9552 17 1 6.9864 11.5945 -0.9940 18 6 7.6326 12.0365 -2.9888 19 7 7.9683 11.5398 -4.1605 20 14 7.6544 13.8844 -2.7167 21 1 7.2378 14.1845 -1.3233 22 1 9.0273 14.4023 -2.9457 23 1 6.7151 14.5355 -3.6648 24 6 7.4846 7.5589 -1.2852 25 6 7.1015 6.6345 -0.1252 26 1 7.5449 7.0049 0.7990 27 6 7.6108 5.2196 -0.4072 28 6 2.7187 3.3774 -1.1971 29 6 2.2624 2.0727 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0831 1.5632 2.1325 36 1 2.9044 3.8846 2.1325 37 1 3.0935 5.9618 0.8900 38 1 3.0936 5.9618 -0.8900 39 1 5.1852 8.3664 1.0719 40 1 3.8472 7.7143 0.0912 41 1 4.8813 9.7869 -0.9019 42 1 4.9852 8.3703 -1.9752 43 1 7.4932 9.4664 -3.0185 44 1 8.2275 12.1333 -4.8827 45 1 7.1194 7.1378 -2.2219 46 1 8.5692 7.6579 -1.3293 47 1 8.6813 5.2524 -0.6099 48 1 7.4245 4.5866 0.4604 49 1 7.0895 4.8117 -1.2732 50 1 2.8946 3.8880 -2.1324 51 1 2.0819 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044761899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:36 Heat of formation + Delta-G solvation = -19.676576 kcal Electronic energy + Delta-G solvation = -28197.219108 eV Core-core repulsion = 24481.627190 eV Total energy + Delta-G solvation = -3715.591917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62817 -40.24567 -38.65254 -36.16254 -35.60818 -34.08921 -33.65704 -31.89552 -31.77818 -30.92984 -28.55022 -27.85663 -26.01167 -24.48565 -24.27512 -23.61152 -22.86697 -21.66850 -21.29796 -20.00129 -19.07767 -17.79269 -17.36377 -16.94904 -16.73074 -16.61621 -16.14731 -15.87297 -15.49409 -15.40810 -14.92486 -14.84159 -14.60540 -14.50310 -14.44619 -14.27523 -14.01082 -13.68841 -13.40455 -13.37645 -13.10688 -12.90478 -12.85899 -12.80957 -12.63998 -12.58331 -12.48354 -12.10874 -12.04559 -12.01633 -11.92442 -11.70644 -11.65937 -11.63267 -11.34803 -10.89602 -10.11224 -9.76578 -9.54208 -9.35741 -9.00188 -7.92905 -5.21550 0.43026 0.56089 1.48534 1.48848 1.58733 1.69129 2.05505 2.56990 2.88322 3.40614 3.66684 3.72580 3.74791 3.91048 3.95406 4.02029 4.07908 4.15443 4.17451 4.21537 4.28554 4.36085 4.48234 4.52222 4.58766 4.60499 4.62397 4.64165 4.72563 4.75268 4.79455 4.81594 4.84956 5.03509 5.07106 5.08136 5.09944 5.15563 5.20667 5.25587 5.28883 5.39788 5.41922 5.51881 5.55079 5.56613 5.72056 5.73595 5.76556 6.16568 6.28829 6.52866 7.27589 7.34742 8.10734 8.33537 9.30959 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.002158 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.153016 B =12971.381945 C =13271.096829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.100 4.100 8 C 0.514 3.486 9 O -0.562 6.562 10 N -0.607 5.607 11 C 0.114 3.886 12 C -0.141 4.141 13 C 0.172 3.828 14 H 0.048 0.952 15 N -0.739 5.739 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.297 1.297 23 H -0.296 1.296 24 C -0.123 4.123 25 C 0.153 3.847 26 H 0.082 0.918 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.369 0.631 44 H 0.249 0.751 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.043 0.957 50 H 0.119 0.881 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -20.118 12.975 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.131 4.131 6 C -0.080 4.080 7 C -0.139 4.139 8 C 0.303 3.697 9 O -0.441 6.441 10 N -0.340 5.340 11 C -0.008 4.008 12 C -0.182 4.182 13 C 0.064 3.936 14 H 0.066 0.934 15 N -0.378 5.378 16 C -0.364 4.364 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.225 1.225 23 H -0.224 1.224 24 C -0.162 4.162 25 C 0.049 3.951 26 H 0.100 0.900 27 C -0.179 4.179 28 C -0.138 4.138 29 C -0.147 4.147 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.138 0.862 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.820 -20.488 13.091 28.474 hybrid contribution 0.569 1.264 -0.988 1.702 sum -14.251 -19.224 12.103 26.817 Atomic orbital electron populations 1.21721 0.93989 1.02376 1.01929 1.20579 0.96714 0.91490 1.03362 1.20168 0.98830 0.97164 0.93047 1.21223 1.00128 0.94813 0.98273 1.21186 0.98907 0.95347 0.97679 1.19453 0.99462 0.95367 0.93755 1.20797 0.90759 0.95453 1.06886 1.20952 0.90591 0.82840 0.75301 1.90739 1.69859 1.32715 1.50788 1.48298 1.06912 1.06675 1.72143 1.21925 0.97933 0.82355 0.98632 1.22452 0.98215 0.99452 0.98095 1.20422 0.92961 0.88986 0.91211 0.93403 1.42678 1.80765 1.02660 1.11652 1.19676 1.35850 0.83940 0.96923 0.90177 1.25559 1.03388 1.02278 0.95972 1.69832 1.54272 1.34890 1.03366 0.85103 0.76511 0.80615 0.77731 1.18653 1.22500 1.22371 1.22144 1.00737 0.95144 0.98164 1.21165 0.79854 0.96289 0.97774 0.90014 1.22011 0.98985 0.94326 1.02610 1.21162 0.99372 0.95507 0.97753 1.21185 1.00410 0.94729 0.98391 0.92690 0.93024 0.91168 0.90747 0.90357 0.84586 0.85085 0.85480 0.86838 0.89661 0.86992 0.91450 0.93512 0.79930 0.94235 0.93295 0.91497 0.93086 0.91310 0.93813 0.86247 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.86 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.68 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 5 C -0.11 -2.23 9.70 22.27 0.22 -2.02 16 6 C -0.08 -1.70 4.37 -19.86 -0.09 -1.79 16 7 C -0.10 -1.84 4.19 29.10 0.12 -1.72 16 8 C 0.51 13.08 7.49 87.66 0.66 13.73 16 9 O -0.56 -17.92 11.60 -3.04 -0.04 -17.96 16 10 N -0.61 -15.16 2.97 -795.01 -2.36 -17.53 16 11 C 0.11 2.45 6.35 86.36 0.55 2.99 16 12 C -0.14 -4.34 5.66 30.67 0.17 -4.17 16 13 C 0.17 6.38 2.73 45.02 0.12 6.50 16 14 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 15 N -0.74 -36.20 5.12 -322.81 -1.65 -37.85 16 16 C -0.23 -12.44 9.93 84.03 0.83 -11.61 16 17 H 0.08 4.07 7.83 -2.92 -0.02 4.05 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 19 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 20 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 C -0.12 -4.06 4.84 30.67 0.15 -3.91 16 25 C 0.15 4.25 3.49 44.98 0.16 4.40 16 26 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 27 C -0.12 -3.52 7.61 71.98 0.55 -2.97 16 28 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 29 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.91 8.09 -2.38 -0.02 0.90 16 34 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.13 1.63 7.65 -2.39 -0.02 1.61 16 38 H 0.11 1.84 7.86 -2.39 -0.02 1.83 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 1.70 5.93 -2.39 -0.01 1.68 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.54 16 43 H 0.37 19.95 7.80 -92.71 -0.72 19.23 16 44 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 2.08 6.57 -2.39 -0.02 2.06 16 49 H 0.04 1.42 6.93 -2.39 -0.02 1.40 16 50 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 51 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -68.66 402.47 3.78 -64.88 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.17 Total: 35.18 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.35 Total: -15.09 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -3.73 Total: -114.46 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.04 Total: -17.96 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.66 3.78 -64.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.206 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds