Wall clock time and date at job start Tue Mar 31 2020 16:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47203 * 2 1 4 4 C 1.52996 * 109.46835 * 240.00416 * 2 1 3 5 5 C 1.50697 * 109.47439 * 120.00115 * 2 1 3 6 6 C 1.38377 * 119.92512 * 359.97438 * 5 2 1 7 7 C 1.38339 * 120.29117 * 180.02562 * 6 5 2 8 8 C 1.37975 * 120.14642 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85357 * 0.02562 * 8 7 6 10 10 C 1.47839 * 120.14760 * 179.97438 * 9 8 7 11 11 O 1.21553 * 120.00410 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99905 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99822 * 179.97438 * 12 10 9 14 14 C 1.52993 * 110.89183 * 297.57543 * 13 12 10 15 15 C 1.55157 * 111.03555 * 173.66724 * 13 12 10 16 16 C 1.54334 * 103.02095 * 277.21854 * 15 13 12 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 13 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 C 1.37937 * 119.92861 * 180.25582 * 5 2 1 28 28 H 1.09010 * 109.46940 * 300.00210 * 1 2 3 29 29 H 1.08998 * 109.47496 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46995 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47106 * 300.00219 * 3 2 1 33 33 H 1.08998 * 109.46990 * 60.00051 * 3 2 1 34 34 H 1.09009 * 109.47229 * 299.99623 * 4 2 1 35 35 H 1.08999 * 109.47712 * 59.99453 * 4 2 1 36 36 H 1.09005 * 109.47447 * 179.97438 * 4 2 1 37 37 H 1.08004 * 119.85489 * 0.02562 * 6 5 2 38 38 H 1.07998 * 119.92680 * 179.97438 * 7 6 5 39 39 H 1.08002 * 120.07440 * 179.97438 * 8 7 6 40 40 H 0.96991 * 119.99925 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47666 * 182.43089 * 14 13 12 42 42 H 1.09008 * 109.47143 * 302.42655 * 14 13 12 43 43 H 1.08999 * 109.47170 * 62.42125 * 14 13 12 44 44 H 1.08998 * 110.71770 * 35.78022 * 15 13 12 45 45 H 1.09002 * 110.71853 * 158.87455 * 15 13 12 46 46 H 1.08998 * 109.99457 * 218.65928 * 16 15 13 47 47 H 1.09007 * 109.77698 * 97.49747 * 16 15 13 48 48 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 49 49 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 50 50 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 51 51 H 1.07999 * 120.07281 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1319 -1.2353 2.1405 7 6 1.5847 -1.8884 3.2728 8 6 2.9389 -2.0210 3.5014 9 6 3.8525 -1.4939 2.5875 10 6 5.3050 -1.6317 2.8261 11 8 6.0984 -1.1713 2.0287 12 7 5.7495 -2.2680 3.9281 13 6 7.1888 -2.4050 4.1643 14 6 7.8476 -3.2284 3.0559 15 6 7.4677 -3.0255 5.5587 16 6 7.3757 -1.8099 6.5051 17 7 7.6026 -0.6060 5.6923 18 6 7.5810 0.6836 6.1527 19 1 7.7657 1.5026 5.4733 20 6 7.3217 0.9380 7.4923 21 7 7.0971 -0.0603 8.3203 22 14 7.2930 2.6970 8.1204 23 1 6.9952 2.6983 9.5752 24 1 8.6162 3.3284 7.8849 25 1 6.2440 3.4626 7.4003 26 6 7.8637 -1.0173 4.3008 27 6 3.3889 -0.8309 1.4498 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 0.0708 -1.1346 1.9662 38 1 0.8767 -2.2955 3.9795 39 1 3.2912 -2.5307 4.3859 40 1 5.1164 -2.6351 4.5646 41 1 8.9078 -3.3524 3.2765 42 1 7.3716 -4.2074 2.9987 43 1 7.7326 -2.7124 2.1027 44 1 6.7111 -3.7695 5.8081 45 1 8.4646 -3.4650 5.5928 46 1 8.1381 -1.8827 7.2806 47 1 6.3853 -1.7696 6.9586 48 1 6.9163 0.1176 9.2566 49 1 7.4159 -0.3076 3.6051 50 1 8.9362 -1.0961 4.1234 51 1 4.0906 -0.4165 0.7412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046715554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:20 Heat of formation + Delta-G solvation = 3.771430 kcal Electronic energy + Delta-G solvation = -29202.456054 eV Core-core repulsion = 25487.880919 eV Total energy + Delta-G solvation = -3714.575136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39406 -39.29606 -37.26800 -36.19631 -33.93151 -32.11095 -31.13358 -30.26989 -29.50097 -28.62723 -27.61918 -27.39983 -25.63519 -24.05788 -23.40203 -22.83342 -20.89370 -20.19523 -19.44365 -18.75815 -17.56119 -16.76875 -16.07196 -15.64157 -15.09767 -14.94792 -14.67230 -14.56790 -14.38866 -14.18211 -13.74419 -13.70109 -13.58233 -13.22684 -12.83318 -12.73423 -12.37201 -12.21970 -12.00308 -11.97339 -11.86257 -11.77810 -11.76085 -11.71578 -11.62150 -11.13208 -10.89568 -10.86520 -10.83787 -10.64191 -10.36569 -10.33097 -10.07747 -9.96309 -9.61631 -9.27019 -8.92761 -8.77863 -8.59451 -8.47068 -6.75770 -5.66938 -2.98474 0.95022 1.34915 3.10924 3.43930 3.47731 3.49319 3.50798 3.98644 4.38401 4.54537 4.56703 4.79935 4.82952 4.93481 5.03891 5.10150 5.18360 5.29393 5.33170 5.41686 5.44821 5.50513 5.53587 5.56873 5.64867 5.66728 5.71698 5.74383 5.75536 5.81010 5.92105 6.02193 6.02969 6.06043 6.13950 6.15908 6.18612 6.35280 6.37808 6.40727 6.43410 6.52717 6.57487 6.71687 6.86810 6.89079 7.18331 7.57988 7.59624 7.83337 7.94967 8.30306 8.62185 9.27761 9.87835 10.54015 11.45133 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.003488 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.537198 B = 8024.993273 C = 9052.715676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.083 4.083 6 C -0.102 4.102 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.122 4.122 10 C 0.560 3.440 11 O -0.538 6.538 12 N -0.696 5.696 13 C 0.156 3.844 14 C -0.148 4.148 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.131 3.869 27 C -0.057 4.057 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.396 0.604 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.251 0.749 49 H 0.056 0.944 50 H 0.025 0.975 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 -6.930 -14.809 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.144 4.144 8 C -0.108 4.108 9 C -0.125 4.125 10 C 0.347 3.653 11 O -0.417 6.417 12 N -0.346 5.346 13 C 0.070 3.930 14 C -0.207 4.207 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.574 5.574 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.213 1.213 26 C 0.004 3.996 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.042 0.958 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.493 -6.490 -15.139 20.674 hybrid contribution -0.345 0.741 0.997 1.289 sum -12.838 -5.749 -14.143 19.947 Atomic orbital electron populations 1.21967 0.94211 1.01879 1.02004 1.19485 0.95562 0.95198 0.92547 1.21924 1.01698 0.94382 1.01887 1.21908 1.01588 1.00124 0.96083 1.19755 0.92959 0.99195 0.96373 1.21322 0.99811 0.97081 0.93832 1.21068 0.95345 1.00132 0.97808 1.21345 0.93290 0.98108 0.98039 1.20058 0.93286 1.02236 0.96951 1.18132 0.87666 0.77941 0.81545 1.90704 1.56615 1.48189 1.46168 1.45720 1.07855 1.57459 1.23528 1.21489 0.79523 0.97351 0.94649 1.21987 1.00109 0.98940 0.99672 1.23236 1.01174 0.99633 0.94520 1.21143 1.00692 0.81968 0.90863 1.44428 1.83475 1.02401 1.02567 1.19021 1.40875 0.82282 0.92739 0.90679 1.24745 1.02262 0.97445 0.96053 1.69938 1.55116 1.28716 1.03595 0.86219 0.77867 0.84194 0.77649 1.21641 1.21210 1.21290 1.21889 0.96237 0.92988 0.88456 1.21058 0.94973 0.95588 0.95941 0.92211 0.92343 0.92296 0.92032 0.92339 0.92352 0.92528 0.92344 0.92110 0.85475 0.85607 0.85676 0.76858 0.91836 0.93154 0.91045 0.91840 0.90866 0.93879 0.93675 0.93873 0.92577 0.95751 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.13 37.16 0.26 -0.81 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.35 8.28 37.16 0.31 -1.05 16 4 C -0.14 -1.21 8.29 37.16 0.31 -0.90 16 5 C -0.08 -0.95 4.76 -104.68 -0.50 -1.45 16 6 C -0.10 -1.08 8.97 -39.49 -0.35 -1.43 16 7 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 8 C -0.09 -1.15 9.54 -39.19 -0.37 -1.52 16 9 C -0.12 -1.85 5.87 -104.97 -0.62 -2.47 16 10 C 0.56 9.99 7.17 -12.33 -0.09 9.90 16 11 O -0.54 -10.96 13.15 5.32 0.07 -10.89 16 12 N -0.70 -11.88 5.13 -46.55 -0.24 -12.12 16 13 C 0.16 2.84 0.82 -129.67 -0.11 2.74 16 14 C -0.15 -2.33 8.58 37.15 0.32 -2.01 16 15 C -0.15 -2.65 5.99 -24.89 -0.15 -2.79 16 16 C 0.18 4.26 5.37 -3.06 -0.02 4.24 16 17 N -0.60 -15.74 3.39 -170.06 -0.58 -16.31 16 18 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.93 -27.24 10.31 55.49 0.57 -26.67 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.13 2.96 6.10 -2.52 -0.02 2.94 16 27 C -0.06 -0.79 8.25 -39.18 -0.32 -1.11 16 28 H 0.06 0.44 7.51 -51.92 -0.39 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 31 H 0.06 0.65 7.37 -51.93 -0.38 0.26 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.57 7.40 -51.93 -0.38 0.19 16 37 H 0.13 1.05 5.87 -52.48 -0.31 0.74 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 1.45 6.41 -52.49 -0.34 1.11 16 40 H 0.40 6.01 6.53 -40.82 -0.27 5.74 16 41 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 44 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 45 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 46 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 47 H 0.05 1.17 7.37 -51.93 -0.38 0.79 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.06 1.37 6.31 -51.93 -0.33 1.05 16 50 H 0.02 0.55 8.04 -51.93 -0.42 0.14 16 51 H 0.13 1.91 6.68 -52.49 -0.35 1.56 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.61 392.89 -9.83 -42.43 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.43 Total: 4.76 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.12 Total: -4.78 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.24 Total: -55.10 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.61 -9.83 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.204 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds