Wall clock time and date at job start Tue Mar 31 2020 16:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47203 * 2 1 4 4 C 1.52996 * 109.46835 * 240.00416 * 2 1 3 5 5 C 1.50697 * 109.47439 * 120.00115 * 2 1 3 6 6 C 1.38377 * 119.92512 * 359.97438 * 5 2 1 7 7 C 1.38339 * 120.29117 * 180.02562 * 6 5 2 8 8 C 1.37975 * 120.14642 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85357 * 0.02562 * 8 7 6 10 10 C 1.47839 * 120.14760 * 179.97438 * 9 8 7 11 11 O 1.21553 * 120.00410 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99905 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99822 * 179.97438 * 12 10 9 14 14 C 1.52993 * 110.89183 * 297.57543 * 13 12 10 15 15 C 1.55157 * 111.03555 * 173.66724 * 13 12 10 16 16 C 1.54334 * 103.02095 * 277.21854 * 15 13 12 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 13 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 C 1.37937 * 119.92861 * 180.25582 * 5 2 1 28 28 H 1.09010 * 109.46940 * 300.00210 * 1 2 3 29 29 H 1.08998 * 109.47496 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46995 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47106 * 300.00219 * 3 2 1 33 33 H 1.08998 * 109.46990 * 60.00051 * 3 2 1 34 34 H 1.09009 * 109.47229 * 299.99623 * 4 2 1 35 35 H 1.08999 * 109.47712 * 59.99453 * 4 2 1 36 36 H 1.09005 * 109.47447 * 179.97438 * 4 2 1 37 37 H 1.08004 * 119.85489 * 0.02562 * 6 5 2 38 38 H 1.07998 * 119.92680 * 179.97438 * 7 6 5 39 39 H 1.08002 * 120.07440 * 179.97438 * 8 7 6 40 40 H 0.96991 * 119.99925 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47666 * 182.43089 * 14 13 12 42 42 H 1.09008 * 109.47143 * 302.42655 * 14 13 12 43 43 H 1.08999 * 109.47170 * 62.42125 * 14 13 12 44 44 H 1.08998 * 110.71770 * 35.78022 * 15 13 12 45 45 H 1.09002 * 110.71853 * 158.87455 * 15 13 12 46 46 H 1.08998 * 109.99457 * 218.65928 * 16 15 13 47 47 H 1.09007 * 109.77698 * 97.49747 * 16 15 13 48 48 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 49 49 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 50 50 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 51 51 H 1.07999 * 120.07281 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1319 -1.2353 2.1405 7 6 1.5847 -1.8884 3.2728 8 6 2.9389 -2.0210 3.5014 9 6 3.8525 -1.4939 2.5875 10 6 5.3050 -1.6317 2.8261 11 8 6.0984 -1.1713 2.0287 12 7 5.7495 -2.2680 3.9281 13 6 7.1888 -2.4050 4.1643 14 6 7.8476 -3.2284 3.0559 15 6 7.4677 -3.0255 5.5587 16 6 7.3757 -1.8099 6.5051 17 7 7.6026 -0.6060 5.6923 18 6 7.5810 0.6836 6.1527 19 1 7.7657 1.5026 5.4733 20 6 7.3217 0.9380 7.4923 21 7 7.0971 -0.0603 8.3203 22 14 7.2930 2.6970 8.1204 23 1 6.9952 2.6983 9.5752 24 1 8.6162 3.3284 7.8849 25 1 6.2440 3.4626 7.4003 26 6 7.8637 -1.0173 4.3008 27 6 3.3889 -0.8309 1.4498 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 0.0708 -1.1346 1.9662 38 1 0.8767 -2.2955 3.9795 39 1 3.2912 -2.5307 4.3859 40 1 5.1164 -2.6351 4.5646 41 1 8.9078 -3.3524 3.2765 42 1 7.3716 -4.2074 2.9987 43 1 7.7326 -2.7124 2.1027 44 1 6.7111 -3.7695 5.8081 45 1 8.4646 -3.4650 5.5928 46 1 8.1381 -1.8827 7.2806 47 1 6.3853 -1.7696 6.9586 48 1 6.9163 0.1176 9.2566 49 1 7.4159 -0.3076 3.6051 50 1 8.9362 -1.0961 4.1234 51 1 4.0906 -0.4165 0.7412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046715554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:20 Heat of formation + Delta-G solvation = -14.759596 kcal Electronic energy + Delta-G solvation = -29203.259620 eV Core-core repulsion = 25487.880919 eV Total energy + Delta-G solvation = -3715.378701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60124 -40.46919 -38.80429 -37.11753 -35.71693 -33.78533 -32.38350 -31.65277 -30.72896 -30.25529 -28.30222 -28.12991 -27.53739 -25.60343 -24.71990 -23.83529 -22.32585 -21.77762 -20.71017 -20.03530 -19.00022 -18.35413 -17.25189 -17.06856 -16.70464 -16.16354 -16.03003 -15.87013 -15.59600 -15.36298 -15.12530 -14.85360 -14.76562 -14.39293 -14.20735 -13.90963 -13.68829 -13.56763 -13.39100 -13.15362 -13.07073 -12.92676 -12.81420 -12.77218 -12.71144 -12.56652 -12.54448 -12.15653 -12.07408 -12.00667 -11.84309 -11.72042 -11.67649 -11.56182 -11.42267 -10.72756 -10.69683 -10.09848 -9.84408 -9.69083 -8.87878 -7.87305 -5.21028 -0.09308 0.40353 1.41509 1.44361 1.50882 1.90320 2.20108 2.46720 2.90035 3.30462 3.50254 3.59712 3.67346 3.77566 3.85776 4.03229 4.10888 4.11957 4.12219 4.17370 4.33817 4.38440 4.52141 4.62535 4.66650 4.75829 4.76338 4.79943 4.84178 4.85937 4.89924 4.91055 4.97926 5.01429 5.03244 5.03864 5.06382 5.15659 5.24250 5.32079 5.34052 5.39535 5.40998 5.41688 5.51382 5.62641 5.65268 5.67867 5.75808 5.96635 6.18511 6.60521 7.10290 7.26673 7.75704 8.40226 9.22265 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.003488 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.537198 B = 8024.993273 C = 9052.715676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.094 4.094 7 C -0.122 4.122 8 C -0.096 4.096 9 C -0.150 4.150 10 C 0.554 3.446 11 O -0.574 6.574 12 N -0.693 5.693 13 C 0.166 3.834 14 C -0.139 4.139 15 C -0.128 4.128 16 C 0.186 3.814 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.066 0.934 20 C -0.056 4.056 21 N -0.944 5.944 22 Si 0.973 3.027 23 H -0.286 1.286 24 H -0.280 1.280 25 H -0.283 1.283 26 C 0.128 3.872 27 C -0.072 4.072 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.406 0.594 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.010 0.990 47 H 0.018 0.982 48 H 0.248 0.752 49 H 0.028 0.972 50 H 0.025 0.975 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 -8.037 -15.232 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.195 4.195 5 C -0.084 4.084 6 C -0.112 4.112 7 C -0.140 4.140 8 C -0.115 4.115 9 C -0.153 4.153 10 C 0.343 3.657 11 O -0.455 6.455 12 N -0.344 5.344 13 C 0.079 3.921 14 C -0.197 4.197 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.346 5.346 18 C -0.375 4.375 19 H 0.083 0.917 20 C -0.250 4.250 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.212 1.212 24 H -0.206 1.206 25 H -0.209 1.209 26 C 0.002 3.998 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.243 0.757 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.028 0.972 47 H 0.036 0.964 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.042 0.958 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.928 -7.620 -15.572 22.878 hybrid contribution 0.388 1.142 1.090 1.626 sum -14.540 -6.478 -14.482 21.520 Atomic orbital electron populations 1.21958 0.92130 1.02834 1.02863 1.19557 0.97139 0.94444 0.91699 1.21927 1.00465 0.95061 1.02462 1.21893 1.00535 1.00552 0.96550 1.20037 0.91972 0.98886 0.97472 1.21735 1.01183 0.95403 0.92903 1.21460 0.94886 0.99290 0.98355 1.21526 0.94012 0.98072 0.97847 1.19984 0.91963 1.04696 0.98624 1.18642 0.88859 0.77108 0.81084 1.90674 1.57845 1.49634 1.47370 1.45696 1.07617 1.57429 1.23626 1.21385 0.80098 0.94754 0.95904 1.21909 1.01003 0.99346 0.97455 1.23117 1.03663 0.97626 0.92260 1.20943 0.97881 0.83729 0.91339 1.44669 1.83377 1.02311 1.04290 1.19274 1.41377 0.83646 0.93172 0.91651 1.25503 1.02101 1.01319 0.96071 1.70134 1.55386 1.30294 1.03449 0.85242 0.77952 0.79713 0.76963 1.21201 1.20570 1.20892 1.21982 0.96460 0.95188 0.86189 1.21048 0.96106 0.96305 0.95656 0.91890 0.91061 0.91235 0.94045 0.90531 0.92957 0.92136 0.90707 0.93849 0.82354 0.82469 0.84711 0.75708 0.90394 0.90449 0.92803 0.88348 0.88823 0.97222 0.96377 0.94238 0.95338 0.95765 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.13 71.98 0.51 -1.15 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.53 16 3 C -0.14 -2.65 8.28 71.98 0.60 -2.06 16 4 C -0.14 -2.25 8.29 71.98 0.60 -1.65 16 5 C -0.08 -1.84 4.76 -19.90 -0.09 -1.93 16 6 C -0.09 -1.73 8.97 22.33 0.20 -1.53 16 7 C -0.12 -2.36 10.03 22.23 0.22 -2.14 16 8 C -0.10 -2.37 9.54 22.53 0.21 -2.16 16 9 C -0.15 -4.63 5.87 -20.09 -0.12 -4.75 16 10 C 0.55 20.46 7.17 86.78 0.62 21.08 16 11 O -0.57 -24.74 13.15 -3.88 -0.05 -24.79 16 12 N -0.69 -23.70 5.13 -419.47 -2.15 -25.85 16 13 C 0.17 5.95 0.82 5.00 0.00 5.95 16 14 C -0.14 -4.15 8.58 71.98 0.62 -3.53 16 15 C -0.13 -4.43 5.99 31.79 0.19 -4.24 16 16 C 0.19 9.04 5.37 86.73 0.47 9.51 16 17 N -0.62 -33.47 3.39 -691.96 -2.35 -35.82 16 18 C -0.25 -14.66 10.28 84.03 0.86 -13.79 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 21 N -0.94 -56.75 10.31 21.65 0.22 -56.53 16 22 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.13 5.96 6.10 86.86 0.53 6.49 16 27 C -0.07 -2.08 8.25 22.53 0.19 -1.89 16 28 H 0.06 0.72 7.51 -2.38 -0.02 0.70 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.69 7.51 -2.39 -0.02 0.67 16 31 H 0.04 0.92 7.37 -2.39 -0.02 0.90 16 32 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.85 7.40 -2.38 -0.02 0.83 16 37 H 0.16 1.92 5.87 -2.91 -0.02 1.90 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.14 2.95 6.41 -2.91 -0.02 2.93 16 40 H 0.41 12.03 6.53 -92.71 -0.61 11.43 16 41 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 42 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.05 1.83 6.53 -2.39 -0.02 1.81 16 44 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 45 H 0.09 2.90 8.01 -2.39 -0.02 2.88 16 46 H 0.01 0.52 7.52 -2.39 -0.02 0.51 16 47 H 0.02 0.96 7.37 -2.38 -0.02 0.94 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.03 1.47 6.31 -2.39 -0.02 1.46 16 50 H 0.02 1.13 8.04 -2.39 -0.02 1.11 16 51 H 0.11 3.63 6.68 -2.91 -0.02 3.61 16 Total: -1.00 -74.48 392.89 4.04 -70.44 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.31 Total: 24.30 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.03 Total: -1.17 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -4.28 Total: -118.20 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.48 4.04 -70.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.680 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds