Wall clock time and date at job start Tue Mar 31 2020 16:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46905 * 2 1 4 4 C 1.53007 * 109.46808 * 239.99859 * 2 1 3 5 5 C 1.50697 * 109.47102 * 120.00443 * 2 1 3 6 6 C 1.38380 * 119.92855 * 359.97438 * 5 2 1 7 7 C 1.38339 * 120.29265 * 179.97438 * 6 5 2 8 8 C 1.37979 * 120.14977 * 359.97438 * 7 6 5 9 9 C 1.39561 * 119.84551 * 0.02562 * 8 7 6 10 10 C 1.47850 * 120.13979 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99525 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00256 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 C 1.52998 * 110.78102 * 56.75699 * 13 12 10 15 15 C 1.55161 * 110.71744 * 179.97438 * 13 12 10 16 16 C 1.54905 * 101.61551 * 82.88146 * 15 13 12 17 17 N 1.47424 * 104.83768 * 36.98827 * 16 15 13 18 18 C 1.36934 * 125.65042 * 155.91003 * 17 16 15 19 19 H 1.08002 * 120.00038 * 353.93662 * 18 17 16 20 20 C 1.38814 * 119.99730 * 173.93682 * 18 17 16 21 21 N 1.31621 * 119.99912 * 6.85209 * 20 18 17 22 22 Si 1.86806 * 119.99801 * 186.84322 * 20 18 17 23 23 H 1.48496 * 109.46692 * 94.98990 * 22 20 18 24 24 H 1.48497 * 109.46800 * 214.98873 * 22 20 18 25 25 H 1.48493 * 109.47075 * 334.98992 * 22 20 18 26 26 C 1.47022 * 108.69973 * 335.87189 * 17 16 15 27 27 C 1.37941 * 119.92792 * 180.23470 * 5 2 1 28 28 H 1.09002 * 109.47066 * 299.99520 * 1 2 3 29 29 H 1.08998 * 109.47229 * 59.99848 * 1 2 3 30 30 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46763 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47301 * 300.00108 * 3 2 1 33 33 H 1.08993 * 109.47036 * 60.00514 * 3 2 1 34 34 H 1.08998 * 109.47170 * 300.00138 * 4 2 1 35 35 H 1.09006 * 109.46760 * 60.00422 * 4 2 1 36 36 H 1.09005 * 109.46588 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.85337 * 0.02562 * 6 5 2 38 38 H 1.07997 * 119.92675 * 180.02562 * 7 6 5 39 39 H 1.07990 * 120.08132 * 180.02562 * 8 7 6 40 40 H 0.97002 * 119.99976 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47051 * 183.23721 * 14 13 12 42 42 H 1.08994 * 109.47065 * 303.23559 * 14 13 12 43 43 H 1.08998 * 109.47135 * 63.23915 * 14 13 12 44 44 H 1.08994 * 111.00529 * 324.78398 * 15 13 12 45 45 H 1.09008 * 110.99917 * 200.97027 * 15 13 12 46 46 H 1.09009 * 110.36812 * 155.82945 * 16 15 13 47 47 H 1.09004 * 110.36494 * 278.14727 * 16 15 13 48 48 H 0.97005 * 119.99054 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.88069 * 120.47811 * 26 17 16 50 50 H 1.09000 * 109.88647 * 241.48575 * 26 17 16 51 51 H 1.07996 * 120.07205 * 0.03984 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1318 -1.2354 2.1405 7 6 1.5846 -1.8896 3.2722 8 6 2.9388 -2.0231 3.5003 9 6 3.8524 -1.4960 2.5864 10 6 5.3049 -1.6349 2.8246 11 8 6.0983 -1.1743 2.0271 12 7 5.7494 -2.2720 3.9259 13 6 7.1887 -2.4101 4.1616 14 6 7.8695 -1.0401 4.1806 15 6 7.4573 -3.1745 5.4848 16 6 7.3244 -4.6481 5.0262 17 7 7.9085 -4.6765 3.6729 18 6 8.4355 -5.7785 3.0540 19 1 8.5353 -6.7067 3.5971 20 6 8.8414 -5.7025 1.7288 21 7 8.8465 -4.5421 1.1075 22 14 9.3806 -7.2472 0.8271 23 1 8.2304 -7.8071 0.0731 24 1 10.4759 -6.9117 -0.1179 25 1 9.8642 -8.2504 1.8093 26 6 7.8306 -3.3258 3.0975 27 6 3.3888 -0.8314 1.4496 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 0.0707 -1.1347 1.9661 38 1 0.8766 -2.2974 3.9784 39 1 3.2911 -2.5343 4.3839 40 1 5.1162 -2.6392 4.5625 41 1 8.9451 -1.1705 4.2996 42 1 7.6680 -0.5212 3.2435 43 1 7.4806 -0.4525 5.0122 44 1 6.7069 -2.9300 6.2365 45 1 8.4613 -2.9703 5.8570 46 1 7.8819 -5.3051 5.6939 47 1 6.2751 -4.9418 4.9928 48 1 9.1305 -4.4891 0.1815 49 1 8.8313 -2.9676 2.8559 50 1 7.2153 -3.3410 2.1978 51 1 4.0906 -0.4171 0.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046715555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:23 Heat of formation + Delta-G solvation = 6.357974 kcal Electronic energy + Delta-G solvation = -29208.771870 eV Core-core repulsion = 25494.308896 eV Total energy + Delta-G solvation = -3714.462975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.35644 -39.24712 -37.24859 -36.17401 -33.85603 -32.07858 -31.24165 -30.39207 -29.45276 -28.18594 -27.59302 -27.36481 -25.74387 -24.01717 -23.42241 -22.81971 -20.81294 -20.31460 -19.34632 -18.73733 -17.48083 -16.75278 -16.06202 -15.79655 -15.10382 -14.96903 -14.60209 -14.39013 -14.21213 -14.10839 -13.73976 -13.67575 -13.57419 -13.22853 -12.79281 -12.56267 -12.35262 -12.26065 -12.16669 -11.90659 -11.83635 -11.74100 -11.70560 -11.57836 -11.46367 -11.10706 -10.92249 -10.85711 -10.76646 -10.62278 -10.46072 -10.28932 -10.05022 -9.94914 -9.61085 -9.17959 -8.90464 -8.77255 -8.52452 -8.37857 -6.74831 -5.62791 -2.97122 0.96960 1.34890 3.16808 3.44608 3.49090 3.51935 3.56626 4.02945 4.40190 4.55683 4.58771 4.82288 4.85499 4.92178 5.04669 5.14271 5.20730 5.31388 5.35104 5.44109 5.47906 5.52800 5.54753 5.59616 5.67387 5.68883 5.75280 5.75636 5.76355 5.81759 5.94227 6.03116 6.07809 6.09628 6.15045 6.17425 6.24806 6.30501 6.35925 6.42127 6.54061 6.60995 6.64046 6.72839 6.84396 6.88546 7.06939 7.61219 7.78589 7.93109 8.06922 8.34371 8.73312 9.28757 9.89727 10.55947 11.47734 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003370 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.004850 B = 8306.999285 C = 9240.283623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.127 4.127 8 C -0.093 4.093 9 C -0.120 4.120 10 C 0.555 3.445 11 O -0.522 6.522 12 N -0.705 5.705 13 C 0.142 3.858 14 C -0.149 4.149 15 C -0.134 4.134 16 C 0.133 3.867 17 N -0.606 5.606 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.912 5.912 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.183 3.817 27 C -0.057 4.057 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.391 0.609 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.015 0.985 48 H 0.252 0.748 49 H 0.049 0.951 50 H 0.059 0.941 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 11.000 4.194 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.122 4.122 7 C -0.145 4.145 8 C -0.112 4.112 9 C -0.123 4.123 10 C 0.341 3.659 11 O -0.399 6.399 12 N -0.356 5.356 13 C 0.056 3.944 14 C -0.207 4.207 15 C -0.173 4.173 16 C 0.007 3.993 17 N -0.333 5.333 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.558 5.558 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.057 3.943 27 C -0.075 4.075 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.794 11.270 3.411 20.510 hybrid contribution -0.054 -1.181 -0.119 1.188 sum -16.847 10.089 3.291 19.911 Atomic orbital electron populations 1.21964 0.94236 1.01945 1.01867 1.19493 0.95525 0.95142 0.92671 1.21911 1.01697 0.94418 1.01725 1.21929 1.01846 1.00248 0.95911 1.19774 0.92960 0.99179 0.96217 1.21310 0.99783 0.97271 0.93860 1.21045 0.95291 1.00122 0.97996 1.21310 0.93261 0.98129 0.98489 1.20125 0.93437 1.01812 0.96916 1.18134 0.87578 0.78646 0.81532 1.90765 1.56338 1.48146 1.44638 1.45889 1.08024 1.57674 1.24047 1.21780 0.79165 0.95982 0.97436 1.22014 1.00103 0.95977 1.02600 1.23062 1.01725 0.97244 0.95265 1.21549 0.95992 0.93338 0.88469 1.44499 1.70067 1.06400 1.12356 1.19014 1.34601 0.89043 0.93571 0.90517 1.24851 1.01664 0.96910 0.96801 1.70000 1.52618 1.21845 1.11364 0.86168 0.77780 0.82473 0.79772 1.21710 1.21763 1.20681 1.21508 0.98808 0.81852 0.92089 1.21102 0.94996 0.95654 0.95785 0.92323 0.92343 0.92250 0.92021 0.92320 0.92550 0.92392 0.92325 0.91911 0.85503 0.85714 0.85835 0.77462 0.91855 0.90256 0.93804 0.91815 0.90125 0.94225 0.96756 0.93704 0.93254 0.92319 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 7.13 37.16 0.26 -0.82 16 2 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 3 C -0.14 -1.28 8.28 37.16 0.31 -0.97 16 4 C -0.14 -1.43 8.29 37.16 0.31 -1.12 16 5 C -0.08 -0.95 4.76 -104.68 -0.50 -1.45 16 6 C -0.10 -1.08 8.97 -39.49 -0.35 -1.44 16 7 C -0.13 -1.33 10.03 -39.64 -0.40 -1.73 16 8 C -0.09 -1.15 9.54 -39.18 -0.37 -1.53 16 9 C -0.12 -1.84 5.87 -104.96 -0.62 -2.46 16 10 C 0.55 10.36 7.00 -12.33 -0.09 10.27 16 11 O -0.52 -11.68 13.33 5.32 0.07 -11.61 16 12 N -0.71 -12.18 5.10 -46.82 -0.24 -12.42 16 13 C 0.14 2.75 0.81 -129.96 -0.11 2.64 16 14 C -0.15 -2.67 8.44 37.16 0.31 -2.36 16 15 C -0.13 -2.28 6.07 -24.58 -0.15 -2.42 16 16 C 0.13 2.72 7.21 -2.53 -0.02 2.71 16 17 N -0.61 -15.88 3.39 -170.04 -0.58 -16.45 16 18 C -0.23 -6.71 10.26 -15.06 -0.15 -6.87 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 21 N -0.91 -28.14 10.36 55.49 0.57 -27.56 16 22 Si 0.91 22.80 29.56 -169.99 -5.02 17.77 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.18 4.67 4.33 -3.04 -0.01 4.65 16 27 C -0.06 -0.82 8.25 -39.18 -0.32 -1.14 16 28 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 31 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.71 7.40 -51.93 -0.38 0.33 16 37 H 0.13 1.02 5.87 -52.48 -0.31 0.71 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.29 6.40 -52.49 -0.34 0.96 16 40 H 0.39 5.55 6.52 -40.82 -0.27 5.28 16 41 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 42 H 0.08 1.59 5.96 -51.93 -0.31 1.28 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 45 H 0.08 1.34 8.05 -51.92 -0.42 0.92 16 46 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.05 1.42 7.17 -51.93 -0.37 1.05 16 50 H 0.06 1.74 6.14 -51.93 -0.32 1.42 16 51 H 0.13 2.06 6.68 -52.49 -0.35 1.71 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -34.04 392.70 -9.82 -43.86 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.42 Total: 5.16 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.12 Total: -4.67 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.24 Total: -56.44 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.04 -9.82 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.218 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds