Wall clock time and date at job start Tue Mar 31 2020 16:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46905 * 2 1 4 4 C 1.53007 * 109.46808 * 239.99859 * 2 1 3 5 5 C 1.50697 * 109.47102 * 120.00443 * 2 1 3 6 6 C 1.38380 * 119.92855 * 359.97438 * 5 2 1 7 7 C 1.38339 * 120.29265 * 179.97438 * 6 5 2 8 8 C 1.37979 * 120.14977 * 359.97438 * 7 6 5 9 9 C 1.39561 * 119.84551 * 0.02562 * 8 7 6 10 10 C 1.47850 * 120.13979 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99525 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00256 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 C 1.52998 * 110.78102 * 56.75699 * 13 12 10 15 15 C 1.55161 * 110.71744 * 179.97438 * 13 12 10 16 16 C 1.54905 * 101.61551 * 82.88146 * 15 13 12 17 17 N 1.47424 * 104.83768 * 36.98827 * 16 15 13 18 18 C 1.36934 * 125.65042 * 155.91003 * 17 16 15 19 19 H 1.08002 * 120.00038 * 353.93662 * 18 17 16 20 20 C 1.38814 * 119.99730 * 173.93682 * 18 17 16 21 21 N 1.31621 * 119.99912 * 6.85209 * 20 18 17 22 22 Si 1.86806 * 119.99801 * 186.84322 * 20 18 17 23 23 H 1.48496 * 109.46692 * 94.98990 * 22 20 18 24 24 H 1.48497 * 109.46800 * 214.98873 * 22 20 18 25 25 H 1.48493 * 109.47075 * 334.98992 * 22 20 18 26 26 C 1.47022 * 108.69973 * 335.87189 * 17 16 15 27 27 C 1.37941 * 119.92792 * 180.23470 * 5 2 1 28 28 H 1.09002 * 109.47066 * 299.99520 * 1 2 3 29 29 H 1.08998 * 109.47229 * 59.99848 * 1 2 3 30 30 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46763 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47301 * 300.00108 * 3 2 1 33 33 H 1.08993 * 109.47036 * 60.00514 * 3 2 1 34 34 H 1.08998 * 109.47170 * 300.00138 * 4 2 1 35 35 H 1.09006 * 109.46760 * 60.00422 * 4 2 1 36 36 H 1.09005 * 109.46588 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.85337 * 0.02562 * 6 5 2 38 38 H 1.07997 * 119.92675 * 180.02562 * 7 6 5 39 39 H 1.07990 * 120.08132 * 180.02562 * 8 7 6 40 40 H 0.97002 * 119.99976 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47051 * 183.23721 * 14 13 12 42 42 H 1.08994 * 109.47065 * 303.23559 * 14 13 12 43 43 H 1.08998 * 109.47135 * 63.23915 * 14 13 12 44 44 H 1.08994 * 111.00529 * 324.78398 * 15 13 12 45 45 H 1.09008 * 110.99917 * 200.97027 * 15 13 12 46 46 H 1.09009 * 110.36812 * 155.82945 * 16 15 13 47 47 H 1.09004 * 110.36494 * 278.14727 * 16 15 13 48 48 H 0.97005 * 119.99054 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.88069 * 120.47811 * 26 17 16 50 50 H 1.09000 * 109.88647 * 241.48575 * 26 17 16 51 51 H 1.07996 * 120.07205 * 0.03984 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1318 -1.2354 2.1405 7 6 1.5846 -1.8896 3.2722 8 6 2.9388 -2.0231 3.5003 9 6 3.8524 -1.4960 2.5864 10 6 5.3049 -1.6349 2.8246 11 8 6.0983 -1.1743 2.0271 12 7 5.7494 -2.2720 3.9259 13 6 7.1887 -2.4101 4.1616 14 6 7.8695 -1.0401 4.1806 15 6 7.4573 -3.1745 5.4848 16 6 7.3244 -4.6481 5.0262 17 7 7.9085 -4.6765 3.6729 18 6 8.4355 -5.7785 3.0540 19 1 8.5353 -6.7067 3.5971 20 6 8.8414 -5.7025 1.7288 21 7 8.8465 -4.5421 1.1075 22 14 9.3806 -7.2472 0.8271 23 1 8.2304 -7.8071 0.0731 24 1 10.4759 -6.9117 -0.1179 25 1 9.8642 -8.2504 1.8093 26 6 7.8306 -3.3258 3.0975 27 6 3.3888 -0.8314 1.4496 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 0.0707 -1.1347 1.9661 38 1 0.8766 -2.2974 3.9784 39 1 3.2911 -2.5343 4.3839 40 1 5.1162 -2.6392 4.5625 41 1 8.9451 -1.1705 4.2996 42 1 7.6680 -0.5212 3.2435 43 1 7.4806 -0.4525 5.0122 44 1 6.7069 -2.9300 6.2365 45 1 8.4613 -2.9703 5.8570 46 1 7.8819 -5.3051 5.6939 47 1 6.2751 -4.9418 4.9928 48 1 9.1305 -4.4891 0.1815 49 1 8.8313 -2.9676 2.8559 50 1 7.2153 -3.3410 2.1978 51 1 4.0906 -0.4171 0.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046715555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:22 Heat of formation + Delta-G solvation = -14.614965 kcal Electronic energy + Delta-G solvation = -29209.681325 eV Core-core repulsion = 25494.308896 eV Total energy + Delta-G solvation = -3715.372429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59396 -40.46023 -38.81562 -37.11926 -35.67248 -33.85598 -32.53681 -31.66176 -30.61611 -29.94430 -28.30064 -28.15342 -27.72071 -25.63899 -24.71946 -23.81860 -22.27541 -21.81565 -20.65951 -20.08952 -18.87627 -18.47389 -17.42302 -17.16275 -16.40015 -16.08540 -15.96891 -15.87356 -15.60405 -15.30684 -15.12850 -14.79565 -14.73931 -14.37693 -14.25752 -14.08151 -13.72176 -13.46706 -13.37788 -13.21387 -13.06887 -12.91655 -12.81012 -12.75179 -12.71104 -12.56569 -12.54367 -12.17432 -12.00644 -11.90325 -11.85233 -11.78438 -11.67601 -11.54149 -11.42414 -10.79944 -10.60120 -10.08135 -9.82666 -9.68046 -8.89376 -7.85088 -5.21792 -0.07639 0.41363 1.40569 1.43639 1.52765 1.93541 2.20786 2.47451 2.91528 3.32106 3.54546 3.60353 3.73866 3.77055 3.86120 4.04235 4.10027 4.12199 4.12851 4.18222 4.34350 4.38750 4.53041 4.59849 4.63855 4.73479 4.77942 4.78298 4.82722 4.85695 4.88463 4.97853 5.00785 5.02756 5.03021 5.07390 5.15090 5.16833 5.23927 5.30962 5.34516 5.39119 5.40511 5.44427 5.47656 5.52433 5.66302 5.75135 5.87992 5.98387 6.18494 6.65790 7.06962 7.34554 7.77942 8.42291 9.23882 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003370 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.004850 B = 8306.999285 C = 9240.283623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.084 4.084 6 C -0.094 4.094 7 C -0.119 4.119 8 C -0.092 4.092 9 C -0.149 4.149 10 C 0.547 3.453 11 O -0.575 6.575 12 N -0.694 5.694 13 C 0.149 3.851 14 C -0.141 4.141 15 C -0.115 4.115 16 C 0.124 3.876 17 N -0.630 5.630 18 C -0.242 4.242 19 H 0.088 0.912 20 C -0.071 4.071 21 N -0.949 5.949 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.260 1.260 26 C 0.199 3.801 27 C -0.077 4.077 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.409 0.591 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.242 0.758 49 H 0.000 1.000 50 H 0.004 0.996 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 10.370 7.095 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.196 4.196 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.112 4.112 7 C -0.136 4.136 8 C -0.111 4.111 9 C -0.152 4.152 10 C 0.336 3.664 11 O -0.455 6.455 12 N -0.346 5.346 13 C 0.063 3.937 14 C -0.200 4.200 15 C -0.153 4.153 16 C -0.001 4.001 17 N -0.356 5.356 18 C -0.371 4.371 19 H 0.106 0.894 20 C -0.264 4.264 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.218 1.218 24 H -0.224 1.224 25 H -0.184 1.184 26 C 0.073 3.927 27 C -0.096 4.096 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.162 0.838 40 H 0.247 0.753 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.018 0.982 50 H 0.022 0.978 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.403 10.611 6.390 23.869 hybrid contribution 1.003 -0.991 -1.024 1.743 sum -19.400 9.620 5.367 22.309 Atomic orbital electron populations 1.21947 0.91784 1.02719 1.03153 1.19564 0.97354 0.94755 0.91253 1.21897 1.00318 0.94601 1.02785 1.21932 1.00189 1.00498 0.97350 1.20023 0.91829 0.99164 0.97411 1.21755 1.01117 0.95411 0.92931 1.21502 0.94893 0.98854 0.98380 1.21557 0.93770 0.97523 0.98256 1.19986 0.91732 1.04650 0.98823 1.18803 0.89010 0.77650 0.80967 1.90740 1.58085 1.50352 1.46336 1.45691 1.07415 1.57285 1.24197 1.21515 0.80073 0.95498 0.96661 1.21928 1.00072 0.95427 1.02544 1.23034 1.03971 0.93726 0.94571 1.21845 0.96328 0.96170 0.85717 1.44839 1.70139 1.05912 1.14730 1.19499 1.33421 0.90216 0.93951 0.89437 1.25765 1.02801 0.99844 0.97979 1.70298 1.54414 1.24216 1.10875 0.85084 0.76909 0.79083 0.78473 1.21760 1.22421 1.18413 1.21074 0.95671 0.83309 0.92624 1.21039 0.96169 0.96816 0.95608 0.91042 0.91160 0.91660 0.94295 0.90727 0.91936 0.92750 0.90556 0.94597 0.82174 0.81821 0.83763 0.75287 0.92123 0.93258 0.90028 0.86573 0.89378 0.93004 0.95262 0.94902 0.98213 0.97754 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.13 71.98 0.51 -1.16 16 2 C -0.03 -0.54 0.85 -52.93 -0.05 -0.58 16 3 C -0.14 -2.51 8.28 71.98 0.60 -1.92 16 4 C -0.14 -2.95 8.29 71.98 0.60 -2.35 16 5 C -0.08 -1.91 4.76 -19.90 -0.09 -2.01 16 6 C -0.09 -1.65 8.97 22.33 0.20 -1.45 16 7 C -0.12 -2.02 10.03 22.23 0.22 -1.80 16 8 C -0.09 -2.09 9.54 22.53 0.21 -1.87 16 9 C -0.15 -4.70 5.87 -20.09 -0.12 -4.82 16 10 C 0.55 21.60 7.00 86.79 0.61 22.21 16 11 O -0.57 -28.40 13.33 -3.89 -0.05 -28.45 16 12 N -0.69 -23.87 5.10 -420.31 -2.14 -26.01 16 13 C 0.15 5.80 0.81 4.81 0.00 5.81 16 14 C -0.14 -5.17 8.44 71.98 0.61 -4.57 16 15 C -0.11 -3.56 6.07 31.99 0.19 -3.36 16 16 C 0.12 4.84 7.21 86.85 0.63 5.46 16 17 N -0.63 -33.60 3.39 -691.88 -2.35 -35.95 16 18 C -0.24 -14.13 10.26 84.03 0.86 -13.27 16 19 H 0.09 4.79 7.84 -2.91 -0.02 4.77 16 20 C -0.07 -4.31 5.48 84.86 0.47 -3.84 16 21 N -0.95 -62.59 10.36 21.65 0.22 -62.37 16 22 Si 0.98 48.37 29.56 68.60 2.03 50.40 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.20 10.79 4.33 86.75 0.38 11.16 16 27 C -0.08 -2.37 8.25 22.53 0.19 -2.19 16 28 H 0.07 0.70 7.51 -2.39 -0.02 0.68 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.73 7.51 -2.38 -0.02 0.71 16 31 H 0.04 0.86 7.37 -2.38 -0.02 0.85 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.03 0.91 7.40 -2.38 -0.02 0.89 16 37 H 0.16 1.75 5.87 -2.91 -0.02 1.74 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.14 2.53 6.40 -2.92 -0.02 2.51 16 40 H 0.41 10.68 6.52 -92.71 -0.60 10.08 16 41 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 42 H 0.05 2.11 5.96 -2.39 -0.01 2.10 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.12 2.47 8.07 -2.39 -0.02 2.45 16 45 H 0.09 2.66 8.05 -2.38 -0.02 2.64 16 46 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.24 15.69 8.31 -92.70 -0.77 14.92 16 49 H 0.00 -0.02 7.17 -2.39 -0.02 -0.04 16 50 H 0.00 0.27 6.14 -2.39 -0.01 0.26 16 51 H 0.11 3.74 6.68 -2.91 -0.02 3.72 16 Total: -1.00 -83.43 392.70 4.04 -79.39 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.31 Total: 23.54 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.01 Total: -0.55 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -4.27 Total: -124.33 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -83.43 4.04 -79.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.777 kcal (2) G-P(sol) polarization free energy of solvation -83.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds