Wall clock time and date at job start Tue Mar 31 2020 16:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 C 1.52999 * 109.47181 * 239.99378 * 2 1 3 5 5 C 1.50701 * 109.46615 * 119.99693 * 2 1 3 6 6 C 1.38363 * 119.85629 * 59.99974 * 5 2 1 7 7 C 1.37960 * 120.14803 * 180.02562 * 6 5 2 8 8 C 1.39578 * 119.84648 * 359.97438 * 7 6 5 9 9 C 1.47852 * 120.13676 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00036 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99629 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9 14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11 16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12 17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14 26 26 C 1.39572 * 119.71865 * 0.25501 * 8 7 6 27 27 C 1.37962 * 119.84599 * 359.51440 * 26 8 7 28 28 H 1.08998 * 109.47323 * 300.00886 * 1 2 3 29 29 H 1.09006 * 109.46475 * 60.00239 * 1 2 3 30 30 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46880 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47173 * 299.99363 * 3 2 1 33 33 H 1.09002 * 109.47412 * 59.99765 * 3 2 1 34 34 H 1.09000 * 109.47043 * 300.00212 * 4 2 1 35 35 H 1.08996 * 109.47079 * 60.00767 * 4 2 1 36 36 H 1.09006 * 109.46667 * 180.02562 * 4 2 1 37 37 H 1.08001 * 119.92626 * 0.02562 * 6 5 2 38 38 H 1.07994 * 120.07162 * 180.02562 * 7 6 5 39 39 H 0.97003 * 120.00176 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.47690 * 183.89832 * 13 12 11 41 41 H 1.08999 * 109.46882 * 303.90238 * 13 12 11 42 42 H 1.09005 * 109.47260 * 63.90076 * 13 12 11 43 43 H 1.09000 * 110.72140 * 324.21327 * 14 12 11 44 44 H 1.08998 * 110.72520 * 200.93646 * 14 12 11 45 45 H 1.09002 * 109.88274 * 262.77538 * 15 14 12 46 46 H 1.08996 * 109.88444 * 141.60894 * 15 14 12 47 47 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 48 48 H 1.09000 * 110.37068 * 94.48354 * 25 16 15 49 49 H 1.09005 * 110.36651 * 216.80519 * 25 16 15 50 50 H 1.07995 * 120.07732 * 179.72640 * 26 8 7 51 51 H 1.08008 * 119.92207 * 180.23287 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2305 6 6 1.6961 -2.0350 1.4466 7 6 2.1521 -2.6910 2.5713 8 6 2.9547 -2.0155 3.4920 9 6 3.4464 -2.7121 4.6999 10 8 3.1515 -3.8755 4.8929 11 7 4.2208 -2.0569 5.5873 12 6 4.7076 -2.7470 6.7843 13 6 5.4821 -4.0119 6.4087 14 6 5.5761 -1.8022 7.6564 15 6 4.5242 -1.0159 8.4670 16 7 3.2948 -1.8219 8.4844 17 6 2.1163 -1.4672 9.0851 18 1 1.2666 -2.1323 9.0417 19 6 2.0141 -0.2529 9.7497 20 7 3.0497 0.5579 9.8022 21 14 0.4064 0.2312 10.5685 22 1 -0.4389 0.9734 9.5991 23 1 -0.3093 -0.9909 11.0151 24 1 0.6894 1.0960 11.7421 25 6 3.5426 -3.0781 7.7537 26 6 3.2861 -0.6779 3.2706 27 6 2.8274 -0.0351 2.1393 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2488 37 1 1.0753 -2.5567 0.7331 38 1 1.8893 -3.7251 2.7385 39 1 4.4558 -1.1285 5.4333 40 1 5.7733 -4.5424 7.3152 41 1 4.8505 -4.6565 5.7975 42 1 6.3744 -3.7380 5.8457 43 1 6.1621 -1.1295 7.0302 44 1 6.2238 -2.3759 8.3193 45 1 4.3309 -0.0551 7.9899 46 1 4.8806 -0.8614 9.4854 47 1 2.9780 1.4066 10.2663 48 1 3.8345 -3.8682 8.4454 49 1 2.6553 -3.3723 7.1930 50 1 3.9031 -0.1483 3.9814 51 1 3.0863 0.9989 1.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046794739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:29 Heat of formation + Delta-G solvation = 3.828692 kcal Electronic energy + Delta-G solvation = -28953.608082 eV Core-core repulsion = 25239.035430 eV Total energy + Delta-G solvation = -3714.572652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.38603 -39.35753 -37.36849 -36.09414 -33.93754 -32.13734 -31.09785 -30.48723 -29.44242 -28.61068 -27.60096 -27.50887 -25.63725 -24.30596 -23.47662 -22.31682 -21.04274 -20.15180 -19.44389 -18.87705 -17.93709 -16.74764 -15.96385 -15.63134 -14.99985 -14.93990 -14.67534 -14.57966 -14.44563 -14.10849 -13.74743 -13.70077 -13.57914 -13.28028 -12.92062 -12.81747 -12.54741 -12.26575 -12.17505 -11.96650 -11.92624 -11.88557 -11.74722 -11.62435 -11.52418 -11.19162 -10.92949 -10.88363 -10.84648 -10.67232 -10.35462 -10.33405 -10.06215 -9.98010 -9.63632 -9.24919 -8.98956 -8.78112 -8.61536 -8.45600 -6.77331 -5.68379 -3.00074 0.91421 1.37354 3.08291 3.42137 3.47494 3.49412 3.51818 3.97884 4.31945 4.48023 4.53357 4.73227 4.86685 4.89856 4.98513 5.03479 5.20113 5.27713 5.33753 5.35460 5.42133 5.49387 5.49686 5.51302 5.60583 5.63063 5.65289 5.68903 5.75524 5.79509 5.88519 5.96552 5.98846 6.04017 6.05522 6.15905 6.20079 6.33852 6.38596 6.41192 6.43848 6.50461 6.57864 6.72958 6.83702 6.87208 7.16879 7.56741 7.58463 7.82340 7.95258 8.28653 8.61280 9.26233 9.86240 10.52332 11.43687 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003352 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.661331 B = 8350.667838 C = 9698.088400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.052 4.052 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.130 4.130 9 C 0.559 3.441 10 O -0.540 6.540 11 N -0.695 5.695 12 C 0.157 3.843 13 C -0.153 4.153 14 C -0.147 4.147 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.925 5.925 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.133 3.867 26 C -0.081 4.081 27 C -0.129 4.129 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.251 0.749 48 H 0.026 0.974 49 H 0.050 0.950 50 H 0.126 0.874 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -0.681 -21.179 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.053 4.053 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.133 4.133 9 C 0.347 3.653 10 O -0.419 6.419 11 N -0.345 5.345 12 C 0.070 3.930 13 C -0.211 4.211 14 C -0.186 4.186 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.006 3.994 26 C -0.099 4.099 27 C -0.147 4.147 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.233 0.767 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.044 0.956 49 H 0.068 0.932 50 H 0.144 0.856 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.206 -1.327 -20.866 21.024 hybrid contribution -0.734 0.918 0.560 1.302 sum 1.472 -0.409 -20.306 20.363 Atomic orbital electron populations 1.21903 0.93496 1.02240 1.02053 1.19550 0.95880 0.95142 0.92644 1.21983 1.01274 0.94891 1.02132 1.21891 1.01295 1.00254 0.96090 1.19983 0.96024 0.93894 0.95354 1.20910 1.01299 0.94355 0.97910 1.21229 0.94056 1.00279 0.92225 1.20072 1.01970 0.94747 0.96520 1.18164 0.78199 0.86336 0.82636 1.90688 1.57652 1.16649 1.76931 1.45724 1.51325 1.15212 1.22221 1.21523 0.95119 0.92282 0.84051 1.22042 0.99506 0.97504 1.02096 1.23238 0.98551 0.98433 0.98394 1.21152 0.83591 0.92590 0.97390 1.44444 1.09816 1.15976 1.62682 1.19066 0.88562 1.01189 1.26078 0.90621 1.24752 0.97680 0.97015 1.01096 1.69949 1.28486 1.11038 1.47831 0.86136 0.82884 0.78120 0.78781 1.21729 1.20732 1.21718 1.21919 0.95675 0.89897 0.91897 1.21362 0.98188 0.93468 0.96910 1.21103 0.98948 1.00398 0.94275 0.92249 0.92315 0.92307 0.92147 0.92356 0.92008 0.92334 0.92328 0.92424 0.85765 0.84796 0.76750 0.91911 0.90287 0.93262 0.91802 0.90814 0.93683 0.93825 0.93912 0.95603 0.93204 0.85581 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.29 37.16 0.31 -0.79 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 3 C -0.15 -1.07 7.13 37.16 0.26 -0.81 16 4 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 5 C -0.05 -0.55 4.77 -104.53 -0.50 -1.05 16 6 C -0.13 -1.42 8.69 -39.64 -0.34 -1.76 16 7 C -0.06 -0.80 9.60 -39.18 -0.38 -1.18 16 8 C -0.13 -1.95 5.87 -104.97 -0.62 -2.56 16 9 C 0.56 9.88 7.16 -12.33 -0.09 9.79 16 10 O -0.54 -10.86 13.18 5.32 0.07 -10.79 16 11 N -0.69 -11.89 5.14 -46.44 -0.24 -12.13 16 12 C 0.16 2.86 0.82 -129.55 -0.11 2.75 16 13 C -0.15 -2.44 8.59 37.16 0.32 -2.12 16 14 C -0.15 -2.66 5.97 -24.90 -0.15 -2.80 16 15 C 0.18 4.22 5.36 -3.06 -0.02 4.20 16 16 N -0.60 -15.64 3.39 -169.94 -0.58 -16.22 16 17 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.13 2.99 6.18 -2.41 -0.01 2.97 16 26 C -0.08 -1.04 9.54 -39.19 -0.37 -1.41 16 27 C -0.13 -1.45 8.96 -39.64 -0.36 -1.80 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 31 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 34 H 0.06 0.41 7.37 -51.93 -0.38 0.02 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.12 1.12 7.08 -52.49 -0.37 0.75 16 38 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 39 H 0.40 6.12 6.55 -40.82 -0.27 5.86 16 40 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.08 1.38 5.92 -51.93 -0.31 1.07 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 44 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 45 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 46 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 49 H 0.05 1.21 6.89 -51.93 -0.36 0.85 16 50 H 0.13 1.48 6.41 -52.49 -0.34 1.15 16 51 H 0.13 1.20 5.87 -52.48 -0.31 0.90 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.33 392.89 -9.82 -42.15 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.42 Total: 4.51 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.12 Total: -4.49 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.24 Total: -54.85 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.33 -9.82 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046794739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.976 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds