Wall clock time and date at job start Tue Mar 31 2020 16:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 C 1.52999 * 109.47181 * 239.99378 * 2 1 3 5 5 C 1.50701 * 109.46615 * 119.99693 * 2 1 3 6 6 C 1.38363 * 119.85629 * 59.99974 * 5 2 1 7 7 C 1.37960 * 120.14803 * 180.02562 * 6 5 2 8 8 C 1.39578 * 119.84648 * 359.97438 * 7 6 5 9 9 C 1.47852 * 120.13676 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00036 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99629 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9 14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11 16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12 17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14 26 26 C 1.39572 * 119.71865 * 0.25501 * 8 7 6 27 27 C 1.37962 * 119.84599 * 359.51440 * 26 8 7 28 28 H 1.08998 * 109.47323 * 300.00886 * 1 2 3 29 29 H 1.09006 * 109.46475 * 60.00239 * 1 2 3 30 30 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46880 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47173 * 299.99363 * 3 2 1 33 33 H 1.09002 * 109.47412 * 59.99765 * 3 2 1 34 34 H 1.09000 * 109.47043 * 300.00212 * 4 2 1 35 35 H 1.08996 * 109.47079 * 60.00767 * 4 2 1 36 36 H 1.09006 * 109.46667 * 180.02562 * 4 2 1 37 37 H 1.08001 * 119.92626 * 0.02562 * 6 5 2 38 38 H 1.07994 * 120.07162 * 180.02562 * 7 6 5 39 39 H 0.97003 * 120.00176 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.47690 * 183.89832 * 13 12 11 41 41 H 1.08999 * 109.46882 * 303.90238 * 13 12 11 42 42 H 1.09005 * 109.47260 * 63.90076 * 13 12 11 43 43 H 1.09000 * 110.72140 * 324.21327 * 14 12 11 44 44 H 1.08998 * 110.72520 * 200.93646 * 14 12 11 45 45 H 1.09002 * 109.88274 * 262.77538 * 15 14 12 46 46 H 1.08996 * 109.88444 * 141.60894 * 15 14 12 47 47 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 48 48 H 1.09000 * 110.37068 * 94.48354 * 25 16 15 49 49 H 1.09005 * 110.36651 * 216.80519 * 25 16 15 50 50 H 1.07995 * 120.07732 * 179.72640 * 26 8 7 51 51 H 1.08008 * 119.92207 * 180.23287 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2305 6 6 1.6961 -2.0350 1.4466 7 6 2.1521 -2.6910 2.5713 8 6 2.9547 -2.0155 3.4920 9 6 3.4464 -2.7121 4.6999 10 8 3.1515 -3.8755 4.8929 11 7 4.2208 -2.0569 5.5873 12 6 4.7076 -2.7470 6.7843 13 6 5.4821 -4.0119 6.4087 14 6 5.5761 -1.8022 7.6564 15 6 4.5242 -1.0159 8.4670 16 7 3.2948 -1.8219 8.4844 17 6 2.1163 -1.4672 9.0851 18 1 1.2666 -2.1323 9.0417 19 6 2.0141 -0.2529 9.7497 20 7 3.0497 0.5579 9.8022 21 14 0.4064 0.2312 10.5685 22 1 -0.4389 0.9734 9.5991 23 1 -0.3093 -0.9909 11.0151 24 1 0.6894 1.0960 11.7421 25 6 3.5426 -3.0781 7.7537 26 6 3.2861 -0.6779 3.2706 27 6 2.8274 -0.0351 2.1393 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2488 37 1 1.0753 -2.5567 0.7331 38 1 1.8893 -3.7251 2.7385 39 1 4.4558 -1.1285 5.4333 40 1 5.7733 -4.5424 7.3152 41 1 4.8505 -4.6565 5.7975 42 1 6.3744 -3.7380 5.8457 43 1 6.1621 -1.1295 7.0302 44 1 6.2238 -2.3759 8.3193 45 1 4.3309 -0.0551 7.9899 46 1 4.8806 -0.8614 9.4854 47 1 2.9780 1.4066 10.2663 48 1 3.8345 -3.8682 8.4454 49 1 2.6553 -3.3723 7.1930 50 1 3.9031 -0.1483 3.9814 51 1 3.0863 0.9989 1.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046794739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:28 Heat of formation + Delta-G solvation = -14.181524 kcal Electronic energy + Delta-G solvation = -28954.389064 eV Core-core repulsion = 25239.035430 eV Total energy + Delta-G solvation = -3715.353634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58134 -40.49184 -38.87928 -37.01244 -35.70329 -33.80380 -32.22971 -31.89593 -30.79073 -30.19940 -28.21141 -28.07562 -27.53003 -25.66971 -24.97295 -23.27798 -22.42595 -21.86006 -20.57886 -20.02104 -19.30476 -18.60640 -17.19851 -16.80627 -16.69334 -16.12109 -16.02674 -15.86844 -15.59254 -15.29047 -15.11754 -14.93278 -14.54510 -14.35229 -14.26344 -13.92571 -13.68927 -13.56987 -13.47754 -13.38553 -13.11715 -12.90566 -12.81387 -12.76284 -12.75301 -12.51193 -12.35019 -12.14247 -12.05155 -11.98746 -11.81995 -11.72018 -11.68296 -11.56653 -11.39307 -10.73522 -10.65732 -10.07372 -9.94691 -9.65943 -8.87690 -7.87084 -5.20912 -0.12450 0.41852 1.42481 1.43709 1.52733 1.88190 2.20807 2.46918 2.89148 3.30933 3.50044 3.60335 3.68752 3.74311 3.87946 4.01037 4.02684 4.11772 4.13011 4.17871 4.36207 4.40552 4.52508 4.62150 4.68050 4.77025 4.80724 4.82033 4.84408 4.85526 4.90331 4.93285 4.99682 5.00855 5.06041 5.06389 5.08268 5.10310 5.25000 5.31662 5.36521 5.40403 5.43408 5.46234 5.48577 5.62509 5.65332 5.68367 5.76055 5.94117 6.18472 6.60999 7.10401 7.26196 7.75565 8.40120 9.22642 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003352 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.661331 B = 8350.667838 C = 9698.088400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.045 4.045 6 C -0.124 4.124 7 C -0.071 4.071 8 C -0.157 4.157 9 C 0.555 3.445 10 O -0.573 6.573 11 N -0.694 5.694 12 C 0.166 3.834 13 C -0.143 4.143 14 C -0.129 4.129 15 C 0.186 3.814 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.973 3.027 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.288 1.288 25 C 0.130 3.870 26 C -0.085 4.085 27 C -0.131 4.131 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.405 0.595 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.019 0.981 46 H 0.010 0.990 47 H 0.248 0.752 48 H 0.027 0.973 49 H 0.023 0.977 50 H 0.134 0.866 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 0.183 -23.307 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.204 4.204 4 C -0.194 4.194 5 C -0.045 4.045 6 C -0.142 4.142 7 C -0.090 4.090 8 C -0.160 4.160 9 C 0.344 3.656 10 O -0.454 6.454 11 N -0.344 5.344 12 C 0.079 3.921 13 C -0.202 4.202 14 C -0.167 4.167 15 C 0.061 3.939 16 N -0.347 5.347 17 C -0.373 4.373 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.802 3.198 22 H -0.213 1.213 23 H -0.201 1.201 24 H -0.214 1.214 25 C 0.004 3.996 26 C -0.104 4.104 27 C -0.149 4.149 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.242 0.758 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.037 0.963 46 H 0.028 0.972 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.041 0.959 50 H 0.151 0.849 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.589 -0.466 -23.012 23.162 hybrid contribution -0.915 0.659 1.168 1.624 sum 1.674 0.193 -21.844 21.909 Atomic orbital electron populations 1.21918 0.93110 1.02418 1.02306 1.19626 0.96107 0.95573 0.91840 1.21999 1.01548 0.94217 1.02617 1.21888 1.01146 1.00393 0.95966 1.20365 0.94658 0.93628 0.95889 1.21135 1.00978 0.94763 0.97315 1.21292 0.94507 1.00162 0.93087 1.19982 1.03975 0.95798 0.96214 1.18636 0.77600 0.86093 0.83272 1.90661 1.58810 1.18105 1.77850 1.45710 1.51378 1.15619 1.21691 1.21413 0.93355 0.93574 0.83743 1.21961 0.99681 0.95816 1.02716 1.23119 0.97155 0.98319 0.98140 1.20948 0.84321 0.92410 0.96236 1.44681 1.09837 1.17348 1.62792 1.19311 0.89622 1.01527 1.26804 0.91512 1.25509 1.00872 0.96950 1.01758 1.70142 1.29979 1.11008 1.48145 0.85161 0.79221 0.77757 0.77691 1.21321 1.20074 1.21437 1.22023 0.96508 0.88713 0.92380 1.21497 0.98374 0.92712 0.97790 1.21396 0.98523 1.01357 0.93582 0.93429 0.90666 0.92219 0.91775 0.90952 0.92532 0.92212 0.90797 0.92676 0.83562 0.85725 0.75804 0.90679 0.91963 0.90631 0.88464 0.88849 0.96308 0.97177 0.94266 0.95502 0.95855 0.84857 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.29 71.98 0.60 -1.27 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.48 16 3 C -0.15 -1.75 7.13 71.98 0.51 -1.24 16 4 C -0.14 -1.56 8.29 71.98 0.60 -0.96 16 5 C -0.05 -0.87 4.77 -19.81 -0.09 -0.96 16 6 C -0.12 -2.63 8.69 22.23 0.19 -2.44 16 7 C -0.07 -1.96 9.60 22.53 0.22 -1.74 16 8 C -0.16 -4.74 5.87 -20.09 -0.12 -4.86 16 9 C 0.55 20.03 7.16 86.79 0.62 20.65 16 10 O -0.57 -23.88 13.18 -3.89 -0.05 -23.93 16 11 N -0.69 -23.68 5.14 -419.12 -2.15 -25.83 16 12 C 0.17 5.96 0.82 5.07 0.00 5.96 16 13 C -0.14 -4.35 8.59 71.98 0.62 -3.73 16 14 C -0.13 -4.45 5.97 31.78 0.19 -4.26 16 15 C 0.19 8.96 5.36 86.73 0.47 9.43 16 16 N -0.62 -33.10 3.39 -691.55 -2.35 -35.45 16 17 C -0.24 -14.36 10.28 84.03 0.86 -13.50 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 20 N -0.94 -56.40 10.31 21.65 0.22 -56.18 16 21 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.13 5.98 6.18 86.93 0.54 6.52 16 26 C -0.09 -2.14 9.54 22.53 0.21 -1.93 16 27 C -0.13 -2.72 8.96 22.23 0.20 -2.52 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.78 7.37 -2.39 -0.02 0.76 16 31 H 0.06 0.72 7.50 -2.39 -0.02 0.70 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.74 7.51 -2.39 -0.02 0.72 16 34 H 0.06 0.67 7.37 -2.39 -0.02 0.65 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.15 2.38 7.08 -2.91 -0.02 2.36 16 38 H 0.12 3.55 7.65 -2.91 -0.02 3.53 16 39 H 0.41 12.30 6.55 -92.71 -0.61 11.69 16 40 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 41 H 0.06 2.14 5.92 -2.39 -0.01 2.13 16 42 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.10 2.75 8.09 -2.39 -0.02 2.73 16 44 H 0.09 2.91 8.04 -2.39 -0.02 2.89 16 45 H 0.02 0.99 7.38 -2.39 -0.02 0.97 16 46 H 0.01 0.55 7.51 -2.39 -0.02 0.53 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.03 1.23 7.99 -2.39 -0.02 1.21 16 49 H 0.02 1.18 6.89 -2.38 -0.02 1.16 16 50 H 0.13 3.05 6.41 -2.91 -0.02 3.03 16 51 H 0.15 2.45 5.87 -2.91 -0.02 2.43 16 Total: -1.00 -72.36 392.89 4.05 -68.31 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.31 Total: 24.20 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.04 Total: -0.21 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -4.28 Total: -117.46 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -72.36 4.05 -68.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046794739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.127 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds