Wall clock time and date at job start Tue Mar 31 2020 16:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47059 * 2 1 4 4 C 1.38386 * 119.85491 * 264.99932 * 3 2 1 5 5 C 1.37931 * 120.14459 * 180.02562 * 4 3 2 6 6 C 1.39600 * 119.85166 * 0.02562 * 5 4 3 7 7 C 1.47851 * 120.14039 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99877 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00199 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27782 * 9 7 6 11 11 C 1.53005 * 110.88579 * 303.59977 * 10 9 7 12 12 C 1.55155 * 111.00374 * 179.72348 * 10 9 7 13 13 C 1.54333 * 102.94012 * 277.42701 * 12 10 9 14 14 N 1.47022 * 107.26882 * 337.80352 * 13 12 10 15 15 C 1.36935 * 125.64250 * 178.98891 * 14 13 12 16 16 H 1.08006 * 119.99844 * 179.97438 * 15 14 13 17 17 C 1.38804 * 120.00516 * 359.97438 * 15 14 13 18 18 N 1.31625 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00268 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46917 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46970 * 119.99907 * 19 17 15 22 22 H 1.48498 * 109.47174 * 240.00048 * 19 17 15 23 23 C 1.47417 * 108.70548 * 358.94529 * 14 13 12 24 24 C 1.39550 * 119.71629 * 0.25283 * 6 5 4 25 25 C 1.37986 * 119.84936 * 359.47081 * 24 6 5 26 26 C 1.50695 * 119.92891 * 180.27568 * 25 24 6 27 27 C 1.52998 * 109.47164 * 265.25717 * 26 25 24 28 28 H 1.08998 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46880 * 299.99603 * 1 2 3 30 30 H 1.09000 * 109.46985 * 59.99824 * 1 2 3 31 31 H 1.09002 * 109.46268 * 240.00062 * 2 1 3 32 32 H 1.08995 * 109.47027 * 120.00652 * 2 1 3 33 33 H 1.07998 * 119.92568 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.07878 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.46738 * 59.30454 * 11 10 9 37 37 H 1.09003 * 109.46868 * 179.30035 * 11 10 9 38 38 H 1.08995 * 109.47318 * 299.30435 * 11 10 9 39 39 H 1.09005 * 110.72068 * 35.78472 * 12 10 9 40 40 H 1.08998 * 110.72335 * 158.88678 * 12 10 9 41 41 H 1.08995 * 109.88496 * 97.22656 * 13 12 10 42 42 H 1.09001 * 109.87649 * 218.38956 * 13 12 10 43 43 H 0.96997 * 119.99684 * 180.02562 * 18 17 15 44 44 H 1.09010 * 110.36619 * 265.28660 * 23 14 13 45 45 H 1.08999 * 110.36932 * 142.96934 * 23 14 13 46 46 H 1.07995 * 120.08150 * 179.75115 * 24 6 5 47 47 H 1.09004 * 109.46991 * 25.25952 * 26 25 24 48 48 H 1.09007 * 109.47162 * 145.25278 * 26 25 24 49 49 H 1.09002 * 109.47151 * 180.02562 * 27 26 25 50 50 H 1.09000 * 109.46909 * 299.99830 * 27 26 25 51 51 H 1.08995 * 109.47319 * 60.00112 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0354 -1.1956 5 6 2.8214 3.3354 -1.2025 6 6 2.9569 4.0310 0.0002 7 6 3.4508 5.4246 0.0003 8 8 3.5673 6.0280 1.0490 9 7 3.7708 6.0262 -1.1625 10 6 4.2660 7.4050 -1.1618 11 6 3.2712 8.3415 -0.4731 12 6 4.5751 7.8856 -2.6043 13 6 5.9866 7.3176 -2.8629 14 7 6.6077 7.0785 -1.5519 15 6 7.8570 6.5579 -1.3439 16 1 8.2241 6.4207 -0.3374 17 6 8.6516 6.2064 -2.4264 18 7 8.2044 6.3740 -3.6529 19 14 10.3561 5.4969 -2.1425 20 1 10.6197 5.4106 -0.6836 21 1 10.4331 4.1396 -2.7400 22 1 11.3703 6.3758 -2.7782 23 6 5.6632 7.4929 -0.4986 24 6 2.6296 3.4035 1.2029 25 6 2.1643 2.1045 1.1954 26 6 1.8045 1.4272 2.4926 27 6 3.0010 0.6156 2.9932 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2557 1.4959 -2.1253 34 1 3.0769 3.8142 -2.1363 35 1 3.6775 5.5448 -1.9994 36 1 3.1154 8.0137 0.5547 37 1 3.6673 9.3570 -0.4746 38 1 2.3221 8.3209 -1.0088 39 1 3.8568 7.4704 -3.3114 40 1 4.5792 8.9744 -2.6555 41 1 5.9137 6.3807 -3.4151 42 1 6.5783 8.0381 -3.4275 43 1 8.7596 6.1280 -4.4093 44 1 5.8703 8.5160 -0.1845 45 1 5.7225 6.8146 0.3525 46 1 2.7360 3.9347 2.1371 47 1 1.5404 2.1806 3.2348 48 1 0.9559 0.7621 2.3321 49 1 2.7406 0.1253 3.9312 50 1 3.2651 -0.1378 2.2510 51 1 3.8496 1.2806 3.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046882773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:56 Heat of formation + Delta-G solvation = -20.793547 kcal Electronic energy + Delta-G solvation = -29022.738027 eV Core-core repulsion = 25307.097674 eV Total energy + Delta-G solvation = -3715.640353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59970 -40.42715 -38.79079 -35.79390 -35.61123 -34.33207 -33.63137 -31.85113 -30.85171 -30.43710 -29.78063 -27.54477 -25.89802 -25.40216 -24.66191 -23.00894 -22.49029 -22.11522 -21.18700 -20.27299 -19.10752 -18.38388 -17.37572 -16.84811 -16.58316 -16.51609 -16.07267 -15.97884 -15.58703 -15.26716 -14.82962 -14.66663 -14.60426 -14.47263 -14.24105 -14.15138 -13.90455 -13.58749 -13.46106 -13.40597 -13.22734 -13.10717 -12.87337 -12.78125 -12.76372 -12.46817 -12.14677 -12.12305 -12.05317 -12.02911 -11.98186 -11.72842 -11.68842 -11.55926 -11.46061 -10.74411 -10.66248 -10.07926 -9.81927 -9.55982 -8.88263 -7.87736 -5.21542 -0.13289 0.38683 1.42179 1.42501 1.53196 1.86117 2.19343 2.46325 2.85395 3.30379 3.51369 3.65368 3.71085 3.77499 3.87158 3.95668 4.02198 4.13244 4.16909 4.21745 4.40816 4.47479 4.53946 4.54717 4.59515 4.61575 4.67238 4.75038 4.79658 4.83798 4.87198 4.89625 4.99583 5.01540 5.05587 5.05913 5.09515 5.11362 5.22539 5.31490 5.34442 5.38862 5.40832 5.46963 5.50112 5.61926 5.65946 5.67572 5.75396 5.96726 6.17914 6.60119 7.09911 7.25372 7.74880 8.39469 9.22198 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003395 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.566999 B = 8245.343539 C = 9222.847187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.055 4.055 4 C -0.125 4.125 5 C -0.091 4.091 6 C -0.154 4.154 7 C 0.555 3.445 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.129 4.129 13 C 0.186 3.814 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.067 0.933 17 C -0.058 4.058 18 N -0.944 5.944 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.131 3.869 24 C -0.072 4.072 25 C -0.093 4.093 26 C -0.084 4.084 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.019 0.981 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.027 0.973 45 H 0.022 0.978 46 H 0.120 0.880 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.570 -11.932 5.436 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.055 4.055 4 C -0.143 4.143 5 C -0.109 4.109 6 C -0.157 4.157 7 C 0.344 3.656 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.079 3.921 11 C -0.200 4.200 12 C -0.167 4.167 13 C 0.061 3.939 14 N -0.347 5.347 15 C -0.372 4.372 16 H 0.085 0.915 17 C -0.251 4.251 18 N -0.593 5.593 19 Si 0.802 3.198 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.214 1.214 23 C 0.004 3.996 24 C -0.091 4.091 25 C -0.093 4.093 26 C -0.121 4.121 27 C -0.205 4.205 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.138 0.862 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.095 0.905 50 H 0.079 0.921 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.305 -11.546 6.043 23.292 hybrid contribution 1.624 -0.069 -0.426 1.680 sum -17.682 -11.615 5.617 21.889 Atomic orbital electron populations 1.21751 0.93565 1.02761 1.02153 1.20734 0.97029 0.90684 1.04245 1.20295 0.95985 0.97267 0.91973 1.21277 0.99659 0.94231 0.99084 1.21463 0.97246 0.95493 0.96738 1.19946 1.06234 0.93735 0.95761 1.18620 0.76765 0.86678 0.83505 1.90660 1.55845 1.66549 1.32396 1.45724 1.65137 1.14574 1.08975 1.21393 0.92446 0.81572 0.96702 1.21950 0.98306 0.98432 1.01361 1.23119 0.97236 1.02060 0.94300 1.20947 0.89628 0.96865 0.86467 1.44683 1.13969 1.73982 1.02024 1.19341 0.91080 1.34101 0.92645 0.91544 1.25510 1.02101 1.02396 0.95093 1.70149 1.37379 1.54361 0.97376 0.85088 0.79818 0.77502 0.77396 1.19948 1.21505 1.21448 1.21970 0.89357 0.96697 0.91554 1.21151 0.96210 0.94837 0.96927 1.19944 0.99792 0.93068 0.96495 1.20643 0.99490 0.99521 0.92455 1.21774 0.97185 0.99739 1.01809 0.90682 0.92541 0.92772 0.89800 0.89564 0.83054 0.84845 0.75810 0.92092 0.90548 0.90703 0.88477 0.88806 0.96318 0.97119 0.94264 0.95528 0.95910 0.86218 0.90961 0.88598 0.90521 0.92060 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.72 71.98 0.70 -0.84 16 2 C -0.09 -1.15 5.37 29.85 0.16 -0.99 16 3 C -0.05 -1.07 5.14 -19.81 -0.10 -1.17 16 4 C -0.12 -2.59 9.66 22.23 0.21 -2.38 16 5 C -0.09 -2.32 9.54 22.53 0.21 -2.11 16 6 C -0.15 -4.77 5.87 -20.09 -0.12 -4.89 16 7 C 0.56 20.36 7.14 86.79 0.62 20.98 16 8 O -0.57 -24.24 13.20 -3.88 -0.05 -24.29 16 9 N -0.69 -23.94 5.13 -419.46 -2.15 -26.09 16 10 C 0.17 5.99 0.82 5.00 0.00 6.00 16 11 C -0.14 -4.34 8.53 71.98 0.61 -3.73 16 12 C -0.13 -4.47 5.97 31.79 0.19 -4.28 16 13 C 0.19 8.99 5.36 86.73 0.47 9.46 16 14 N -0.62 -33.22 3.39 -691.98 -2.35 -35.57 16 15 C -0.24 -14.35 10.28 84.03 0.86 -13.48 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 18 N -0.94 -56.47 10.31 21.65 0.22 -56.25 16 19 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 20 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 C 0.13 6.03 6.16 86.86 0.54 6.57 16 24 C -0.07 -2.07 9.22 22.53 0.21 -1.86 16 25 C -0.09 -2.05 5.13 -19.90 -0.10 -2.16 16 26 C -0.08 -1.38 5.37 29.85 0.16 -1.22 16 27 C -0.15 -2.33 9.72 71.98 0.70 -1.63 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.62 6.79 -2.38 -0.02 0.61 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.93 8.05 -2.39 -0.02 0.91 16 32 H 0.09 0.99 5.59 -2.39 -0.01 0.97 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.13 3.09 6.41 -2.91 -0.02 3.07 16 35 H 0.41 12.44 6.55 -92.71 -0.61 11.83 16 36 H 0.06 2.12 6.01 -2.39 -0.01 2.11 16 37 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 2.76 8.09 -2.38 -0.02 2.74 16 40 H 0.09 2.93 8.04 -2.39 -0.02 2.91 16 41 H 0.02 0.99 7.38 -2.39 -0.02 0.97 16 42 H 0.01 0.58 7.50 -2.39 -0.02 0.56 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.03 1.23 8.03 -2.38 -0.02 1.21 16 45 H 0.02 1.16 6.85 -2.39 -0.02 1.14 16 46 H 0.12 3.64 7.65 -2.91 -0.02 3.62 16 47 H 0.07 1.19 8.05 -2.38 -0.02 1.17 16 48 H 0.10 1.18 5.60 -2.38 -0.01 1.16 16 49 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 0.91 6.79 -2.39 -0.02 0.89 16 51 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.27 393.82 3.81 -69.46 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.32 Total: 24.15 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.79 Total: -0.61 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.28 Total: -117.91 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -73.27 3.81 -69.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046882773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.664 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds