Wall clock time and date at job start Tue Mar 31 2020 16:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47091 * 2 1 4 4 C 1.38385 * 119.84915 * 264.99716 * 3 2 1 5 5 C 1.37942 * 120.14390 * 179.97438 * 4 3 2 6 6 C 1.39596 * 119.85214 * 0.02562 * 5 4 3 7 7 C 1.47844 * 120.14486 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00294 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99599 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99829 * 180.02562 * 9 7 6 11 11 C 1.53003 * 110.88810 * 59.29935 * 10 9 7 12 12 C 1.55155 * 111.00852 * 183.18229 * 10 9 7 13 13 C 1.54426 * 102.89504 * 82.58918 * 12 10 9 14 14 N 1.47021 * 107.27920 * 22.19045 * 13 12 10 15 15 C 1.36939 * 125.64480 * 181.02516 * 14 13 12 16 16 H 1.08001 * 119.99637 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00375 * 0.04039 * 15 14 13 18 18 N 1.31617 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47267 * 89.99931 * 19 17 15 21 21 H 1.48504 * 109.47130 * 209.99726 * 19 17 15 22 22 H 1.48501 * 109.46925 * 329.99810 * 19 17 15 23 23 C 1.47419 * 108.70481 * 1.05871 * 14 13 12 24 24 C 1.39557 * 119.71020 * 359.97438 * 6 5 4 25 25 C 1.37973 * 119.85554 * 359.97337 * 24 6 5 26 26 C 1.50706 * 119.92942 * 180.02562 * 25 24 6 27 27 C 1.53006 * 109.47075 * 265.02607 * 26 25 24 28 28 H 1.09000 * 109.47088 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.46950 * 60.00316 * 1 2 3 30 30 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47056 * 239.99281 * 2 1 3 32 32 H 1.09001 * 109.46950 * 119.99684 * 2 1 3 33 33 H 1.07998 * 119.92699 * 359.72744 * 4 3 2 34 34 H 1.07993 * 120.07351 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99896 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.46969 * 60.69712 * 11 10 9 37 37 H 1.08996 * 109.47273 * 180.70373 * 11 10 9 38 38 H 1.09000 * 109.46861 * 300.70178 * 11 10 9 39 39 H 1.08994 * 110.72398 * 200.93762 * 12 10 9 40 40 H 1.08999 * 110.71478 * 324.20887 * 12 10 9 41 41 H 1.09001 * 109.87780 * 262.76865 * 13 12 10 42 42 H 1.08995 * 109.87648 * 141.61241 * 13 12 10 43 43 H 0.96993 * 120.00256 * 179.97438 * 18 17 15 44 44 H 1.09003 * 110.36847 * 217.03098 * 23 14 13 45 45 H 1.08997 * 110.46028 * 94.76028 * 23 14 13 46 46 H 1.07999 * 120.07307 * 179.97438 * 24 6 5 47 47 H 1.09001 * 109.46733 * 25.02376 * 26 25 24 48 48 H 1.08999 * 109.46808 * 145.02623 * 26 25 24 49 49 H 1.08995 * 109.47122 * 180.02562 * 27 26 25 50 50 H 1.09004 * 109.46907 * 299.99971 * 27 26 25 51 51 H 1.09003 * 109.47043 * 59.99857 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0353 -1.1957 5 6 2.8205 3.3358 -1.2028 6 6 2.9550 4.0318 -0.0003 7 6 3.4478 5.4257 -0.0003 8 8 3.5643 6.0292 1.0483 9 7 3.7679 6.0272 -1.1632 10 6 4.2567 7.4082 -1.1633 11 6 5.5336 7.5350 -0.3299 12 6 4.4848 7.9175 -2.6110 13 6 3.0705 8.3569 -3.0486 14 7 2.2958 8.6156 -1.8261 15 6 0.9846 9.0077 -1.7802 16 1 0.5035 9.1732 -0.8276 17 6 0.2737 9.1922 -2.9581 18 7 0.8600 8.9907 -4.1191 19 14 -1.5148 9.7277 -2.8955 20 1 -1.5883 11.2108 -2.9106 21 1 -2.2358 9.1845 -4.0746 22 1 -2.1422 9.2137 -1.6515 23 6 3.1647 8.3838 -0.6579 24 6 2.6222 3.4062 1.2020 25 6 2.1623 2.1054 1.1951 26 6 1.8019 1.4284 2.4923 27 6 2.9986 0.6178 2.9943 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2604 1.4941 -2.1249 34 1 3.0768 3.8141 -2.1365 35 1 3.6745 5.5457 -2.0000 36 1 6.3098 6.8991 -0.7554 37 1 5.8696 8.5718 -0.3353 38 1 5.3308 7.2242 0.6950 39 1 5.1713 8.7640 -2.6184 40 1 4.8543 7.1143 -3.2485 41 1 2.5976 7.5625 -3.6260 42 1 3.1334 9.2658 -3.6469 43 1 0.3632 9.1192 -4.9421 44 1 2.5961 7.9295 0.1536 45 1 3.6155 9.3193 -0.3267 46 1 2.7243 3.9391 2.1358 47 1 1.5367 2.1819 3.2339 48 1 0.9539 0.7627 2.3313 49 1 2.7377 0.1277 3.9323 50 1 3.2638 -0.1357 2.2526 51 1 3.8465 1.2835 3.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046882774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:00 Heat of formation + Delta-G solvation = -2.808447 kcal Electronic energy + Delta-G solvation = -29037.644499 eV Core-core repulsion = 25322.784039 eV Total energy + Delta-G solvation = -3714.860460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37123 -39.23276 -37.18956 -34.79020 -33.92226 -33.55437 -31.88588 -30.22940 -29.90626 -28.98323 -28.56124 -25.64313 -24.94059 -24.01139 -23.44606 -21.95127 -21.63017 -20.32885 -19.89728 -18.84757 -17.56313 -16.67788 -16.27234 -15.62390 -15.36023 -14.90163 -14.64862 -14.57539 -14.02368 -13.96780 -13.77922 -13.69282 -13.63036 -13.36612 -13.24332 -12.77513 -12.60651 -12.54251 -12.08716 -12.02830 -11.85269 -11.80276 -11.63273 -11.55529 -11.48147 -11.27480 -10.90790 -10.86419 -10.85592 -10.72907 -10.35203 -10.33423 -10.05382 -9.96956 -9.62769 -9.25998 -8.85684 -8.70073 -8.59342 -8.44437 -6.76449 -5.67643 -2.99189 0.91578 1.35204 3.06765 3.42662 3.47928 3.49913 3.51627 3.96586 4.52049 4.54002 4.59611 4.73845 4.80107 4.92876 5.08759 5.10556 5.12702 5.21119 5.22976 5.33421 5.41904 5.44059 5.46041 5.51310 5.59582 5.65150 5.65734 5.72481 5.75932 5.83544 5.89318 5.95178 6.02005 6.05473 6.12336 6.16227 6.19594 6.32843 6.38294 6.41044 6.43776 6.54392 6.57779 6.72370 6.85911 6.89131 7.17871 7.57627 7.59161 7.83082 7.95608 8.29499 8.62420 9.27093 9.87119 10.53278 11.44511 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003481 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.525841 B = 8041.313074 C = 9294.594850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.061 4.061 4 C -0.123 4.123 5 C -0.085 4.085 6 C -0.127 4.127 7 C 0.560 3.440 8 O -0.539 6.539 9 N -0.696 5.696 10 C 0.157 3.843 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.220 4.220 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.132 3.868 24 C -0.056 4.056 25 C -0.092 4.092 26 C -0.087 4.087 27 C -0.147 4.147 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.052 0.948 45 H 0.025 0.975 46 H 0.134 0.866 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -18.898 7.380 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.130 4.130 7 C 0.347 3.653 8 O -0.418 6.418 9 N -0.346 5.346 10 C 0.070 3.930 11 C -0.209 4.209 12 C -0.186 4.186 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.006 3.994 24 C -0.075 4.075 25 C -0.092 4.092 26 C -0.124 4.124 27 C -0.205 4.205 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.232 0.768 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.537 -18.386 7.958 21.074 hybrid contribution -1.071 0.221 -0.719 1.308 sum 5.466 -18.165 7.240 20.304 Atomic orbital electron populations 1.21772 0.94557 1.01679 1.02612 1.20637 0.96370 0.92670 1.02972 1.19889 0.97602 0.96051 0.92626 1.20933 1.00639 0.94980 0.97594 1.21316 0.97401 0.94452 0.97194 1.20036 1.04094 0.94519 0.94314 1.18135 0.77350 0.85746 0.84030 1.90696 1.53830 1.65771 1.31521 1.45730 1.66070 1.14300 1.08462 1.21495 0.93966 0.80930 0.96602 1.22006 0.95679 1.01621 1.01585 1.23253 1.01198 1.00244 0.93902 1.21165 0.85118 0.99576 0.88832 1.44434 1.08380 1.80119 0.99955 1.19068 0.85190 1.37759 0.92854 0.90621 1.24748 0.98302 1.02202 0.95285 1.69943 1.35256 1.55740 0.96390 0.86138 0.84670 0.78266 0.76869 1.21655 1.21745 1.20768 1.21873 0.91353 0.94476 0.91742 1.21112 0.95118 0.93488 0.97814 1.19653 1.00693 0.94006 0.94815 1.20591 0.98669 0.99355 0.93821 1.21770 0.98053 0.99963 1.00680 0.92316 0.92302 0.92392 0.91037 0.90566 0.85648 0.85611 0.76816 0.93202 0.91870 0.90706 0.90817 0.91808 0.93703 0.93825 0.93917 0.92927 0.95698 0.84844 0.90880 0.90618 0.92429 0.92544 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 37.16 0.36 -0.81 16 2 C -0.09 -0.72 5.38 -27.88 -0.15 -0.87 16 3 C -0.06 -0.66 5.14 -104.53 -0.54 -1.20 16 4 C -0.12 -1.40 9.66 -39.64 -0.38 -1.78 16 5 C -0.08 -1.11 9.54 -39.18 -0.37 -1.48 16 6 C -0.13 -1.93 5.87 -104.97 -0.62 -2.54 16 7 C 0.56 10.01 7.15 -12.33 -0.09 9.93 16 8 O -0.54 -10.99 13.15 5.33 0.07 -10.92 16 9 N -0.70 -11.96 5.13 -46.55 -0.24 -12.20 16 10 C 0.16 2.86 0.82 -129.67 -0.11 2.76 16 11 C -0.15 -2.39 8.57 37.16 0.32 -2.07 16 12 C -0.15 -2.66 5.99 -24.84 -0.15 -2.81 16 13 C 0.18 4.25 5.37 -3.01 -0.02 4.23 16 14 N -0.60 -15.73 3.39 -170.01 -0.58 -16.30 16 15 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 19 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 C 0.13 2.99 6.13 -2.53 -0.02 2.97 16 24 C -0.06 -0.79 9.22 -39.19 -0.36 -1.15 16 25 C -0.09 -1.06 5.13 -104.68 -0.54 -1.59 16 26 C -0.09 -0.79 5.38 -27.88 -0.15 -0.94 16 27 C -0.15 -1.15 9.72 37.16 0.36 -0.79 16 28 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.08 0.54 5.59 -51.93 -0.29 0.25 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.48 6.41 -52.49 -0.34 1.15 16 35 H 0.40 6.10 6.53 -40.82 -0.27 5.83 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.07 1.30 6.22 -51.93 -0.32 0.97 16 39 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 40 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 41 H 0.04 1.16 7.38 -51.93 -0.38 0.78 16 42 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16 45 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 46 H 0.13 1.90 7.65 -52.49 -0.40 1.50 16 47 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 48 H 0.08 0.60 5.59 -51.93 -0.29 0.31 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.42 6.79 -51.93 -0.35 0.06 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -32.65 393.71 -10.28 -42.93 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.32 Total: 4.55 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.69 Total: -5.00 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.24 Total: -55.13 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.65 -10.28 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046882774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.117 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds