Wall clock time and date at job start Tue Mar 31 2020 16:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47091 * 2 1 4 4 C 1.38385 * 119.84915 * 264.99716 * 3 2 1 5 5 C 1.37942 * 120.14390 * 179.97438 * 4 3 2 6 6 C 1.39596 * 119.85214 * 0.02562 * 5 4 3 7 7 C 1.47844 * 120.14486 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00294 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99599 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99829 * 180.02562 * 9 7 6 11 11 C 1.53003 * 110.88810 * 59.29935 * 10 9 7 12 12 C 1.55155 * 111.00852 * 183.18229 * 10 9 7 13 13 C 1.54426 * 102.89504 * 82.58918 * 12 10 9 14 14 N 1.47021 * 107.27920 * 22.19045 * 13 12 10 15 15 C 1.36939 * 125.64480 * 181.02516 * 14 13 12 16 16 H 1.08001 * 119.99637 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00375 * 0.04039 * 15 14 13 18 18 N 1.31617 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47267 * 89.99931 * 19 17 15 21 21 H 1.48504 * 109.47130 * 209.99726 * 19 17 15 22 22 H 1.48501 * 109.46925 * 329.99810 * 19 17 15 23 23 C 1.47419 * 108.70481 * 1.05871 * 14 13 12 24 24 C 1.39557 * 119.71020 * 359.97438 * 6 5 4 25 25 C 1.37973 * 119.85554 * 359.97337 * 24 6 5 26 26 C 1.50706 * 119.92942 * 180.02562 * 25 24 6 27 27 C 1.53006 * 109.47075 * 265.02607 * 26 25 24 28 28 H 1.09000 * 109.47088 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.46950 * 60.00316 * 1 2 3 30 30 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47056 * 239.99281 * 2 1 3 32 32 H 1.09001 * 109.46950 * 119.99684 * 2 1 3 33 33 H 1.07998 * 119.92699 * 359.72744 * 4 3 2 34 34 H 1.07993 * 120.07351 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99896 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.46969 * 60.69712 * 11 10 9 37 37 H 1.08996 * 109.47273 * 180.70373 * 11 10 9 38 38 H 1.09000 * 109.46861 * 300.70178 * 11 10 9 39 39 H 1.08994 * 110.72398 * 200.93762 * 12 10 9 40 40 H 1.08999 * 110.71478 * 324.20887 * 12 10 9 41 41 H 1.09001 * 109.87780 * 262.76865 * 13 12 10 42 42 H 1.08995 * 109.87648 * 141.61241 * 13 12 10 43 43 H 0.96993 * 120.00256 * 179.97438 * 18 17 15 44 44 H 1.09003 * 110.36847 * 217.03098 * 23 14 13 45 45 H 1.08997 * 110.46028 * 94.76028 * 23 14 13 46 46 H 1.07999 * 120.07307 * 179.97438 * 24 6 5 47 47 H 1.09001 * 109.46733 * 25.02376 * 26 25 24 48 48 H 1.08999 * 109.46808 * 145.02623 * 26 25 24 49 49 H 1.08995 * 109.47122 * 180.02562 * 27 26 25 50 50 H 1.09004 * 109.46907 * 299.99971 * 27 26 25 51 51 H 1.09003 * 109.47043 * 59.99857 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0353 -1.1957 5 6 2.8205 3.3358 -1.2028 6 6 2.9550 4.0318 -0.0003 7 6 3.4478 5.4257 -0.0003 8 8 3.5643 6.0292 1.0483 9 7 3.7679 6.0272 -1.1632 10 6 4.2567 7.4082 -1.1633 11 6 5.5336 7.5350 -0.3299 12 6 4.4848 7.9175 -2.6110 13 6 3.0705 8.3569 -3.0486 14 7 2.2958 8.6156 -1.8261 15 6 0.9846 9.0077 -1.7802 16 1 0.5035 9.1732 -0.8276 17 6 0.2737 9.1922 -2.9581 18 7 0.8600 8.9907 -4.1191 19 14 -1.5148 9.7277 -2.8955 20 1 -1.5883 11.2108 -2.9106 21 1 -2.2358 9.1845 -4.0746 22 1 -2.1422 9.2137 -1.6515 23 6 3.1647 8.3838 -0.6579 24 6 2.6222 3.4062 1.2020 25 6 2.1623 2.1054 1.1951 26 6 1.8019 1.4284 2.4923 27 6 2.9986 0.6178 2.9943 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2604 1.4941 -2.1249 34 1 3.0768 3.8141 -2.1365 35 1 3.6745 5.5457 -2.0000 36 1 6.3098 6.8991 -0.7554 37 1 5.8696 8.5718 -0.3353 38 1 5.3308 7.2242 0.6950 39 1 5.1713 8.7640 -2.6184 40 1 4.8543 7.1143 -3.2485 41 1 2.5976 7.5625 -3.6260 42 1 3.1334 9.2658 -3.6469 43 1 0.3632 9.1192 -4.9421 44 1 2.5961 7.9295 0.1536 45 1 3.6155 9.3193 -0.3267 46 1 2.7243 3.9391 2.1358 47 1 1.5367 2.1819 3.2339 48 1 0.9539 0.7627 2.3313 49 1 2.7377 0.1277 3.9323 50 1 3.2638 -0.1357 2.2526 51 1 3.8465 1.2835 3.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046882774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:59 Heat of formation + Delta-G solvation = -21.071991 kcal Electronic energy + Delta-G solvation = -29038.436466 eV Core-core repulsion = 25322.784039 eV Total energy + Delta-G solvation = -3715.652427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59795 -40.42530 -38.77672 -35.80037 -35.60961 -34.33106 -33.63195 -31.84795 -30.85227 -30.42947 -29.78268 -27.54189 -25.90998 -25.39405 -24.65362 -23.01440 -22.49028 -22.11864 -21.18491 -20.26882 -19.10913 -18.37008 -17.37709 -16.84752 -16.58066 -16.50707 -16.09514 -15.98249 -15.58800 -15.21248 -14.80654 -14.76437 -14.58256 -14.47830 -14.22480 -14.10330 -13.91725 -13.58644 -13.51441 -13.37031 -13.24607 -13.07635 -12.85333 -12.79024 -12.75105 -12.48192 -12.14671 -12.12417 -12.06596 -12.04097 -11.99385 -11.72533 -11.67969 -11.55496 -11.45997 -10.73677 -10.68268 -10.07068 -9.81736 -9.55909 -8.88189 -7.87645 -5.21400 -0.13133 0.38901 1.41752 1.43272 1.52083 1.86604 2.19698 2.46449 2.85649 3.30330 3.50982 3.66031 3.71137 3.77507 3.87071 3.95895 4.02531 4.13274 4.16918 4.21917 4.40888 4.47739 4.53796 4.54838 4.59217 4.62056 4.66979 4.75268 4.79894 4.84077 4.87777 4.90154 5.00394 5.01015 5.05606 5.06254 5.09815 5.10479 5.22606 5.31473 5.34586 5.38033 5.40373 5.47371 5.49375 5.62236 5.66013 5.67724 5.75504 5.96886 6.18102 6.60236 7.09998 7.26009 7.75190 8.39773 9.22162 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003481 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.525841 B = 8041.313074 C = 9294.594850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.056 4.056 4 C -0.124 4.124 5 C -0.091 4.091 6 C -0.154 4.154 7 C 0.555 3.445 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.166 3.834 11 C -0.141 4.141 12 C -0.128 4.128 13 C 0.186 3.814 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.066 0.934 17 C -0.057 4.057 18 N -0.944 5.944 19 Si 0.973 3.027 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.130 3.870 24 C -0.073 4.073 25 C -0.092 4.092 26 C -0.087 4.087 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.018 0.982 42 H 0.010 0.990 43 H 0.248 0.752 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.119 0.881 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -21.440 6.994 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.142 4.142 5 C -0.109 4.109 6 C -0.157 4.157 7 C 0.344 3.656 8 O -0.455 6.455 9 N -0.344 5.344 10 C 0.079 3.921 11 C -0.199 4.199 12 C -0.167 4.167 13 C 0.061 3.939 14 N -0.347 5.347 15 C -0.374 4.374 16 H 0.084 0.916 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.003 3.997 24 C -0.092 4.092 25 C -0.092 4.092 26 C -0.124 4.124 27 C -0.201 4.201 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.242 0.758 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.137 0.863 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.917 -20.942 7.572 23.318 hybrid contribution -1.237 0.973 -0.559 1.670 sum 5.680 -19.969 7.013 21.913 Atomic orbital electron populations 1.21776 0.94274 1.02730 1.01836 1.20721 0.96416 0.90723 1.04537 1.20300 0.95936 0.97410 0.91959 1.21288 0.99553 0.94311 0.99038 1.21468 0.97559 0.95290 0.96626 1.19950 1.06444 0.93477 0.95783 1.18619 0.76633 0.86764 0.83569 1.90666 1.55332 1.66878 1.32642 1.45709 1.65990 1.13835 1.08870 1.21393 0.93409 0.80525 0.96812 1.21927 0.94778 1.03091 1.00105 1.23135 0.97702 1.02008 0.93833 1.20964 0.88091 0.97172 0.87680 1.44673 1.08210 1.79968 1.01802 1.19311 0.86906 1.38370 0.92766 0.91591 1.25506 1.02177 1.02423 0.94932 1.70136 1.36409 1.56113 0.96611 0.85160 0.79929 0.77846 0.76886 1.21123 1.21361 1.20289 1.21969 0.91973 0.95550 0.90175 1.21145 0.96365 0.94747 0.96972 1.19935 0.99708 0.93067 0.96529 1.20659 0.99798 0.99504 0.92445 1.21749 0.96919 0.99702 1.01733 0.92932 0.93296 0.90457 0.89371 0.89179 0.82958 0.84743 0.75771 0.90529 0.90503 0.92454 0.88793 0.88389 0.96369 0.97154 0.94243 0.95685 0.95628 0.86330 0.91422 0.89017 0.90745 0.91696 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.72 71.98 0.70 -1.21 16 2 C -0.09 -1.11 5.38 29.85 0.16 -0.95 16 3 C -0.06 -1.08 5.14 -19.81 -0.10 -1.18 16 4 C -0.12 -2.56 9.66 22.23 0.21 -2.35 16 5 C -0.09 -2.31 9.54 22.53 0.21 -2.10 16 6 C -0.15 -4.79 5.87 -20.09 -0.12 -4.91 16 7 C 0.56 20.50 7.15 86.79 0.62 21.12 16 8 O -0.57 -24.57 13.15 -3.86 -0.05 -24.62 16 9 N -0.69 -23.91 5.13 -419.47 -2.15 -26.07 16 10 C 0.17 5.98 0.82 5.00 0.00 5.99 16 11 C -0.14 -4.26 8.57 71.98 0.62 -3.65 16 12 C -0.13 -4.45 5.99 31.82 0.19 -4.26 16 13 C 0.19 9.03 5.37 86.76 0.47 9.49 16 14 N -0.62 -33.40 3.39 -691.80 -2.35 -35.75 16 15 C -0.24 -14.54 10.28 84.03 0.86 -13.68 16 16 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 17 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 18 N -0.94 -56.67 10.31 21.65 0.22 -56.45 16 19 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 C 0.13 6.02 6.13 86.86 0.53 6.56 16 24 C -0.07 -2.12 9.22 22.53 0.21 -1.91 16 25 C -0.09 -2.06 5.13 -19.90 -0.10 -2.16 16 26 C -0.09 -1.45 5.38 29.85 0.16 -1.29 16 27 C -0.14 -1.97 9.72 71.98 0.70 -1.27 16 28 H 0.05 0.74 6.79 -2.39 -0.02 0.72 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.09 0.94 5.59 -2.39 -0.01 0.93 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.13 3.06 6.41 -2.91 -0.02 3.04 16 35 H 0.41 12.29 6.53 -92.71 -0.61 11.68 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 38 H 0.06 1.97 6.22 -2.39 -0.01 1.96 16 39 H 0.09 2.92 8.04 -2.39 -0.02 2.91 16 40 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 41 H 0.02 0.96 7.38 -2.39 -0.02 0.95 16 42 H 0.01 0.56 7.51 -2.39 -0.02 0.54 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 44 H 0.02 1.29 6.58 -2.39 -0.02 1.27 16 45 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 46 H 0.12 3.66 7.65 -2.91 -0.02 3.64 16 47 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 48 H 0.09 1.24 5.59 -2.39 -0.01 1.23 16 49 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 0.78 6.79 -2.38 -0.02 0.76 16 51 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.01 393.71 3.81 -70.20 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.32 Total: 23.96 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.80 Total: -0.63 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.28 Total: -118.26 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -74.01 3.81 -70.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046882774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds