Wall clock time and date at job start Tue Mar 31 2020 16:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47395 * 2 1 4 4 C 1.38252 * 119.99750 * 264.72213 * 3 2 1 5 5 C 1.38221 * 119.99662 * 179.74208 * 4 3 2 6 6 C 1.38251 * 120.00117 * 0.53405 * 5 4 3 7 7 C 1.38220 * 119.99802 * 359.74512 * 6 5 4 8 8 C 1.38208 * 119.99781 * 84.99610 * 3 2 1 9 9 C 1.50694 * 120.00374 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.47768 * 84.99425 * 9 8 3 11 11 O 1.21288 * 119.99575 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00889 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00557 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.20081 * 35.64003 * 13 12 10 15 15 C 1.50128 * 109.20904 * 155.00055 * 13 12 10 16 16 C 1.52527 * 105.41263 * 218.02678 * 15 13 12 17 17 C 1.46244 * 114.27525 * 270.59251 * 16 15 13 18 18 N 1.50169 * 107.53138 * 58.41185 * 17 16 15 19 19 C 1.36935 * 120.53418 * 109.56578 * 18 17 16 20 20 H 1.08001 * 119.99440 * 156.71071 * 19 18 17 21 21 C 1.38810 * 120.00454 * 336.70601 * 19 18 17 22 22 N 1.31615 * 119.99970 * 340.40403 * 21 19 18 23 23 Si 1.86797 * 119.99994 * 160.40351 * 21 19 18 24 24 H 1.48508 * 109.47071 * 89.99915 * 23 21 19 25 25 H 1.48501 * 109.47175 * 210.00020 * 23 21 19 26 26 H 1.48499 * 109.47242 * 330.00164 * 23 21 19 27 27 C 1.43430 * 118.92253 * 289.58770 * 18 17 16 28 28 C 1.54836 * 109.20606 * 276.32335 * 13 12 10 29 29 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46940 * 300.00216 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.46940 * 239.99784 * 2 1 3 33 33 H 1.09001 * 109.46998 * 120.00117 * 2 1 3 34 34 H 1.08004 * 120.00520 * 0.02562 * 4 3 2 35 35 H 1.07996 * 119.99773 * 180.30557 * 5 4 3 36 36 H 1.07994 * 120.00430 * 179.76981 * 6 5 4 37 37 H 1.08001 * 119.99910 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.47531 * 204.99732 * 9 8 3 39 39 H 1.09001 * 109.46991 * 324.99745 * 9 8 3 40 40 H 0.97005 * 119.99236 * 359.97438 * 12 10 9 41 41 H 1.08996 * 110.24903 * 336.99584 * 15 13 12 42 42 H 1.08993 * 110.24740 * 98.91017 * 15 13 12 43 43 H 1.08996 * 108.52864 * 31.83388 * 16 15 13 44 44 H 1.09007 * 108.52187 * 149.35924 * 16 15 13 45 45 H 1.09000 * 109.84103 * 177.92016 * 17 16 15 46 46 H 1.09003 * 109.84475 * 298.90277 * 17 16 15 47 47 H 0.96993 * 119.99968 * 180.02562 * 22 21 19 48 48 H 1.09001 * 108.15928 * 213.29016 * 27 18 17 49 49 H 1.09007 * 108.15731 * 330.05894 * 27 18 17 50 50 H 1.09002 * 109.36056 * 320.99293 * 28 13 12 51 51 H 1.08997 * 109.36159 * 80.58541 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3667 2.0357 -1.1923 5 6 2.8224 3.3407 -1.1927 6 6 2.9545 4.0272 0.0000 7 6 2.6257 3.4104 1.1924 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4345 2.4925 10 6 2.9858 0.6377 2.9874 11 8 4.0160 0.6183 2.3475 12 7 2.8961 -0.0534 4.1411 13 6 4.0429 -0.8276 4.6224 14 1 4.9626 -0.2977 4.3744 15 6 3.9463 -0.9786 6.1129 16 6 5.3779 -0.8611 6.6259 17 6 6.0992 -2.1316 6.6915 18 7 6.1125 -2.7162 5.3083 19 6 7.2747 -2.7684 4.5861 20 1 7.3847 -3.4916 3.7916 21 6 8.3115 -1.8917 4.8751 22 7 8.0701 -0.7854 5.5460 23 14 10.0492 -2.2822 4.3119 24 1 10.2722 -1.7085 2.9604 25 1 11.0229 -1.6937 5.2664 26 1 10.2340 -3.7547 4.2612 27 6 4.8879 -3.2185 4.7558 28 6 4.0505 -2.2117 3.9285 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2674 1.4981 -2.1237 35 1 3.0788 3.8227 -2.1245 36 1 3.3141 5.0455 0.0000 37 1 2.7285 3.9469 2.1241 38 1 1.5426 2.1905 3.2322 39 1 0.9581 0.7683 2.3354 40 1 2.0723 -0.0376 4.6530 41 1 3.3287 -0.1849 6.5333 42 1 3.5310 -1.9537 6.3671 43 1 5.9264 -0.1850 5.9701 44 1 5.3532 -0.4251 7.6247 45 1 7.1208 -1.9600 7.0305 46 1 5.5907 -2.8110 7.3755 47 1 8.7944 -0.1726 5.7476 48 1 5.1271 -4.0680 4.1160 49 1 4.2674 -3.5785 5.5765 50 1 3.0275 -2.5780 3.8416 51 1 4.4831 -2.1144 2.9327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052487471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:31 Heat of formation + Delta-G solvation = 3.095843 kcal Electronic energy + Delta-G solvation = -29364.628593 eV Core-core repulsion = 25650.024162 eV Total energy + Delta-G solvation = -3714.604431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.17484 -38.97244 -37.50688 -34.56034 -34.30977 -32.64597 -32.08922 -31.52172 -29.97176 -29.48787 -27.54621 -25.99318 -24.02250 -23.86459 -23.00876 -21.96766 -20.76552 -20.26079 -19.56421 -19.04769 -16.74726 -16.71311 -16.34806 -16.09188 -15.54393 -14.98474 -14.94364 -14.45955 -14.06761 -13.86241 -13.76148 -13.66893 -13.42565 -13.19451 -13.06635 -12.97229 -12.38449 -12.20498 -12.13478 -11.95392 -11.83572 -11.77453 -11.39895 -11.33165 -11.21286 -10.83084 -10.73113 -10.70019 -10.55729 -10.33428 -10.17593 -9.99679 -9.72675 -9.46801 -9.37128 -9.30960 -8.73771 -8.53578 -8.50234 -8.30035 -6.65442 -5.72918 -3.11174 1.37739 1.45112 3.04365 3.44055 3.51139 3.53037 3.53381 3.93252 4.57981 4.62758 4.72864 4.89325 4.94438 5.10980 5.16703 5.20591 5.30247 5.36108 5.40174 5.44150 5.47672 5.54005 5.60452 5.63438 5.78423 5.82515 5.85657 5.92602 6.00426 6.05764 6.11524 6.19981 6.30344 6.34857 6.44685 6.50823 6.52369 6.53777 6.69183 6.74821 6.92041 6.95036 6.98087 7.04855 7.08152 7.20546 7.26464 7.62722 7.80616 7.96440 8.01909 8.49154 8.69151 9.25595 9.93144 10.45304 11.35037 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003352 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.185766 B = 8350.978684 C = 9095.178448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.058 4.058 9 C -0.108 4.108 10 C 0.506 3.494 11 O -0.520 6.520 12 N -0.731 5.731 13 C 0.156 3.844 14 H 0.101 0.899 15 C -0.120 4.120 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.162 3.838 28 C -0.150 4.150 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.389 0.611 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.029 0.971 45 H 0.090 0.910 46 H 0.006 0.994 47 H 0.252 0.748 48 H 0.033 0.967 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.910 5.976 -5.819 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.148 4.148 10 C 0.291 3.709 11 O -0.395 6.395 12 N -0.383 5.383 13 C 0.054 3.946 14 H 0.119 0.881 15 C -0.158 4.158 16 C -0.168 4.168 17 C 0.042 3.958 18 N -0.309 5.309 19 C -0.378 4.378 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.728 3.272 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.032 3.968 28 C -0.192 4.192 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.222 0.778 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.108 0.892 46 H 0.024 0.976 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.046 0.954 50 H 0.062 0.938 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.982 6.058 -6.220 19.073 hybrid contribution 0.527 0.112 -0.148 0.558 sum -16.456 6.169 -6.367 18.692 Atomic orbital electron populations 1.21765 0.94850 1.01696 1.01971 1.20569 0.95745 0.92960 1.03385 1.19651 0.98401 0.95635 0.92640 1.20961 1.00271 0.95165 0.97320 1.21072 0.99997 0.94846 0.97954 1.21041 1.00743 0.99960 0.92579 1.20972 0.98636 0.94566 0.98125 1.19123 0.99669 0.93900 0.93169 1.20784 0.98082 1.00082 0.95860 1.20382 0.89245 0.79919 0.81387 1.90790 1.30644 1.62389 1.55716 1.46538 1.17318 1.50408 1.23990 1.21231 0.88641 0.91952 0.92822 0.88122 1.21353 0.99318 1.00569 0.94604 1.20934 0.93354 1.02467 1.00091 1.20163 1.00601 0.90678 0.84393 1.44264 1.03176 1.71441 1.12035 1.19182 0.91101 1.12506 1.15044 0.91564 1.24864 0.99004 0.94891 1.00622 1.69951 1.30638 1.09439 1.44476 0.86357 0.85058 0.77831 0.77925 1.21546 1.21669 1.20662 1.20351 0.87939 0.93839 0.94644 1.23291 0.98717 0.96324 1.00903 0.92337 0.92600 0.92597 0.91015 0.90789 0.86331 0.86371 0.86294 0.86302 0.88514 0.88205 0.77782 0.92936 0.91970 0.87916 0.95269 0.89158 0.97613 0.93810 0.94912 0.95400 0.93828 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.72 37.16 0.36 -0.93 16 2 C -0.09 -1.04 5.38 -27.88 -0.15 -1.19 16 3 C -0.06 -0.83 5.13 -104.63 -0.54 -1.37 16 4 C -0.12 -1.46 9.68 -39.58 -0.38 -1.84 16 5 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 6 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 7 C -0.10 -1.36 9.68 -39.58 -0.38 -1.75 16 8 C -0.06 -0.78 4.37 -104.63 -0.46 -1.24 16 9 C -0.11 -1.28 5.16 -29.04 -0.15 -1.43 16 10 C 0.51 8.30 6.98 -10.99 -0.08 8.22 16 11 O -0.52 -11.42 15.70 5.55 0.09 -11.33 16 12 N -0.73 -11.09 4.97 -54.26 -0.27 -11.36 16 13 C 0.16 2.99 2.22 -68.39 -0.15 2.84 16 14 H 0.10 2.52 6.27 -51.93 -0.33 2.19 16 15 C -0.12 -2.11 5.33 -28.40 -0.15 -2.26 16 16 C -0.13 -2.74 5.02 -30.18 -0.15 -2.89 16 17 C 0.17 3.82 5.25 -5.20 -0.03 3.79 16 18 N -0.59 -14.51 2.60 -175.08 -0.46 -14.97 16 19 C -0.25 -6.87 9.63 -15.06 -0.14 -7.02 16 20 H 0.07 1.84 7.89 -52.49 -0.41 1.42 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 22 N -0.90 -25.43 9.43 55.49 0.52 -24.91 16 23 Si 0.90 22.17 29.60 -169.99 -5.03 17.14 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.16 3.42 5.18 -4.66 -0.02 3.40 16 28 C -0.15 -2.95 5.98 -24.76 -0.15 -3.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 6.80 -51.93 -0.35 0.11 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.07 0.98 6.42 -51.93 -0.33 0.65 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 39 H 0.10 0.96 5.62 -51.93 -0.29 0.67 16 40 H 0.39 4.41 8.48 -40.82 -0.35 4.06 16 41 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 42 H 0.06 1.04 6.29 -51.93 -0.33 0.71 16 43 H 0.10 2.59 5.29 -51.93 -0.27 2.32 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 46 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 49 H 0.03 0.53 6.88 -51.93 -0.36 0.18 16 50 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 51 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -32.22 390.62 -11.07 -43.29 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.36 Total: 6.69 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.46 Total: -10.44 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.20 Total: -51.24 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.22 -11.07 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052487471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.386 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds