Wall clock time and date at job start Tue Mar 31 2020 16:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47395 * 2 1 4 4 C 1.38252 * 119.99750 * 264.72213 * 3 2 1 5 5 C 1.38221 * 119.99662 * 179.74208 * 4 3 2 6 6 C 1.38251 * 120.00117 * 0.53405 * 5 4 3 7 7 C 1.38220 * 119.99802 * 359.74512 * 6 5 4 8 8 C 1.38208 * 119.99781 * 84.99610 * 3 2 1 9 9 C 1.50694 * 120.00374 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.47768 * 84.99425 * 9 8 3 11 11 O 1.21288 * 119.99575 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00889 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00557 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.20081 * 35.64003 * 13 12 10 15 15 C 1.50128 * 109.20904 * 155.00055 * 13 12 10 16 16 C 1.52527 * 105.41263 * 218.02678 * 15 13 12 17 17 C 1.46244 * 114.27525 * 270.59251 * 16 15 13 18 18 N 1.50169 * 107.53138 * 58.41185 * 17 16 15 19 19 C 1.36935 * 120.53418 * 109.56578 * 18 17 16 20 20 H 1.08001 * 119.99440 * 156.71071 * 19 18 17 21 21 C 1.38810 * 120.00454 * 336.70601 * 19 18 17 22 22 N 1.31615 * 119.99970 * 340.40403 * 21 19 18 23 23 Si 1.86797 * 119.99994 * 160.40351 * 21 19 18 24 24 H 1.48508 * 109.47071 * 89.99915 * 23 21 19 25 25 H 1.48501 * 109.47175 * 210.00020 * 23 21 19 26 26 H 1.48499 * 109.47242 * 330.00164 * 23 21 19 27 27 C 1.43430 * 118.92253 * 289.58770 * 18 17 16 28 28 C 1.54836 * 109.20606 * 276.32335 * 13 12 10 29 29 H 1.09001 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46940 * 300.00216 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.46940 * 239.99784 * 2 1 3 33 33 H 1.09001 * 109.46998 * 120.00117 * 2 1 3 34 34 H 1.08004 * 120.00520 * 0.02562 * 4 3 2 35 35 H 1.07996 * 119.99773 * 180.30557 * 5 4 3 36 36 H 1.07994 * 120.00430 * 179.76981 * 6 5 4 37 37 H 1.08001 * 119.99910 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.47531 * 204.99732 * 9 8 3 39 39 H 1.09001 * 109.46991 * 324.99745 * 9 8 3 40 40 H 0.97005 * 119.99236 * 359.97438 * 12 10 9 41 41 H 1.08996 * 110.24903 * 336.99584 * 15 13 12 42 42 H 1.08993 * 110.24740 * 98.91017 * 15 13 12 43 43 H 1.08996 * 108.52864 * 31.83388 * 16 15 13 44 44 H 1.09007 * 108.52187 * 149.35924 * 16 15 13 45 45 H 1.09000 * 109.84103 * 177.92016 * 17 16 15 46 46 H 1.09003 * 109.84475 * 298.90277 * 17 16 15 47 47 H 0.96993 * 119.99968 * 180.02562 * 22 21 19 48 48 H 1.09001 * 108.15928 * 213.29016 * 27 18 17 49 49 H 1.09007 * 108.15731 * 330.05894 * 27 18 17 50 50 H 1.09002 * 109.36056 * 320.99293 * 28 13 12 51 51 H 1.08997 * 109.36159 * 80.58541 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3667 2.0357 -1.1923 5 6 2.8224 3.3407 -1.1927 6 6 2.9545 4.0272 0.0000 7 6 2.6257 3.4104 1.1924 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4345 2.4925 10 6 2.9858 0.6377 2.9874 11 8 4.0160 0.6183 2.3475 12 7 2.8961 -0.0534 4.1411 13 6 4.0429 -0.8276 4.6224 14 1 4.9626 -0.2977 4.3744 15 6 3.9463 -0.9786 6.1129 16 6 5.3779 -0.8611 6.6259 17 6 6.0992 -2.1316 6.6915 18 7 6.1125 -2.7162 5.3083 19 6 7.2747 -2.7684 4.5861 20 1 7.3847 -3.4916 3.7916 21 6 8.3115 -1.8917 4.8751 22 7 8.0701 -0.7854 5.5460 23 14 10.0492 -2.2822 4.3119 24 1 10.2722 -1.7085 2.9604 25 1 11.0229 -1.6937 5.2664 26 1 10.2340 -3.7547 4.2612 27 6 4.8879 -3.2185 4.7558 28 6 4.0505 -2.2117 3.9285 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2674 1.4981 -2.1237 35 1 3.0788 3.8227 -2.1245 36 1 3.3141 5.0455 0.0000 37 1 2.7285 3.9469 2.1241 38 1 1.5426 2.1905 3.2322 39 1 0.9581 0.7683 2.3354 40 1 2.0723 -0.0376 4.6530 41 1 3.3287 -0.1849 6.5333 42 1 3.5310 -1.9537 6.3671 43 1 5.9264 -0.1850 5.9701 44 1 5.3532 -0.4251 7.6247 45 1 7.1208 -1.9600 7.0305 46 1 5.5907 -2.8110 7.3755 47 1 8.7944 -0.1726 5.7476 48 1 5.1271 -4.0680 4.1160 49 1 4.2674 -3.5785 5.5765 50 1 3.0275 -2.5780 3.8416 51 1 4.4831 -2.1144 2.9327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052487471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:30 Heat of formation + Delta-G solvation = -15.099189 kcal Electronic energy + Delta-G solvation = -29365.417589 eV Core-core repulsion = 25650.024162 eV Total energy + Delta-G solvation = -3715.393427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33763 -40.21271 -39.07165 -36.20436 -35.20657 -34.05937 -33.44956 -33.30643 -31.62154 -30.37083 -28.70607 -27.71349 -25.70967 -24.89022 -24.54815 -23.02174 -22.02662 -21.64894 -20.89322 -20.69168 -18.60044 -17.98220 -17.43420 -17.14384 -16.86082 -16.83109 -16.09920 -15.90833 -15.63514 -15.41130 -15.03581 -14.96553 -14.65096 -14.36535 -14.16046 -14.00499 -13.87532 -13.78176 -13.46229 -13.23602 -13.19534 -12.98259 -12.81339 -12.69323 -12.64949 -12.37520 -12.18886 -12.07943 -11.92806 -11.74548 -11.68714 -11.56558 -11.53676 -11.19722 -11.11457 -10.77660 -10.44746 -9.87782 -9.68764 -9.46785 -8.63564 -7.83677 -5.23051 0.43287 0.51368 1.43116 1.45300 1.53837 1.77064 2.34811 2.53327 2.92792 3.29712 3.63442 3.67754 3.85350 3.97673 4.05169 4.06936 4.10821 4.22705 4.28984 4.34812 4.37589 4.49449 4.51601 4.52966 4.63896 4.65344 4.72536 4.75765 4.77042 4.89359 4.90661 5.02619 5.08174 5.09371 5.16825 5.19338 5.23189 5.30322 5.34867 5.39861 5.46560 5.52588 5.59012 5.61892 5.66633 5.73125 5.75524 5.82040 6.15215 6.21317 6.42620 6.74472 7.19427 7.47095 7.93407 8.40722 9.20543 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003352 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.185766 B = 8350.978684 C = 9095.178448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.080 4.080 9 C -0.095 4.095 10 C 0.504 3.496 11 O -0.584 6.584 12 N -0.716 5.716 13 C 0.170 3.830 14 H 0.035 0.965 15 C -0.105 4.105 16 C -0.123 4.123 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.262 4.262 20 H 0.056 0.944 21 C -0.042 4.042 22 N -0.915 5.915 23 Si 0.952 3.048 24 H -0.297 1.297 25 H -0.288 1.288 26 H -0.272 1.272 27 C 0.156 3.844 28 C -0.139 4.139 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.414 0.586 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.245 0.755 48 H 0.024 0.976 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 5.908 -5.199 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.080 4.080 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.141 4.141 8 C -0.080 4.080 9 C -0.134 4.134 10 C 0.291 3.709 11 O -0.463 6.463 12 N -0.368 5.368 13 C 0.065 3.935 14 H 0.053 0.947 15 C -0.143 4.143 16 C -0.163 4.163 17 C 0.044 3.956 18 N -0.324 5.324 19 C -0.393 4.393 20 H 0.074 0.926 21 C -0.238 4.238 22 N -0.561 5.561 23 Si 0.782 3.218 24 H -0.224 1.224 25 H -0.215 1.215 26 H -0.197 1.197 27 C 0.027 3.973 28 C -0.181 4.181 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.252 0.748 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.078 0.922 50 H 0.099 0.901 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -20.016 5.977 -5.569 21.619 hybrid contribution 1.456 0.131 -0.391 1.514 sum -18.560 6.108 -5.960 20.428 Atomic orbital electron populations 1.21726 0.92465 1.02669 1.02704 1.20563 0.97766 0.91944 1.02241 1.19955 0.98642 0.96334 0.93060 1.21275 1.00325 0.95750 0.97880 1.21420 0.99303 0.94804 0.98940 1.21375 1.00567 1.01033 0.92530 1.21271 0.98861 0.94927 0.99036 1.19382 1.00400 0.94338 0.93914 1.20782 0.96339 1.00486 0.95831 1.21209 0.89607 0.79349 0.80724 1.90773 1.33506 1.64499 1.57560 1.46273 1.17201 1.49405 1.23944 1.20714 0.87547 0.91026 0.94177 0.94701 1.21258 0.97304 1.03018 0.92731 1.20745 0.95082 1.00389 1.00050 1.20127 0.99304 0.92184 0.84027 1.44428 1.03634 1.71744 1.12629 1.19362 0.92790 1.12088 1.15048 0.92603 1.25488 1.01837 0.94999 1.01487 1.70133 1.30733 1.09817 1.45412 0.85511 0.81565 0.77891 0.76865 1.22433 1.21450 1.19721 1.20497 0.87354 0.93696 0.95723 1.23146 1.00034 0.96566 0.98307 0.91201 0.91696 0.92033 0.91309 0.92773 0.84837 0.84089 0.84369 0.85342 0.85496 0.85501 0.74820 0.89535 0.89809 0.92485 0.93646 0.92693 0.94821 0.94535 0.95725 0.92156 0.90050 0.96815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.72 71.98 0.70 -1.45 16 2 C -0.09 -1.98 5.38 29.85 0.16 -1.82 16 3 C -0.08 -2.06 5.13 -19.87 -0.10 -2.16 16 4 C -0.13 -3.23 9.68 22.27 0.22 -3.02 16 5 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 6 C -0.14 -3.21 10.05 22.27 0.22 -2.98 16 7 C -0.12 -3.13 9.68 22.27 0.22 -2.91 16 8 C -0.08 -2.09 4.37 -19.87 -0.09 -2.17 16 9 C -0.10 -2.06 5.16 29.10 0.15 -1.91 16 10 C 0.50 16.28 6.98 87.66 0.61 16.89 16 11 O -0.58 -26.72 15.70 -3.06 -0.05 -26.77 16 12 N -0.72 -20.39 4.97 -443.96 -2.21 -22.60 16 13 C 0.17 6.41 2.22 44.69 0.10 6.51 16 14 H 0.03 1.83 6.27 -2.39 -0.01 1.81 16 15 C -0.11 -3.40 5.33 29.51 0.16 -3.24 16 16 C -0.12 -5.17 5.02 28.36 0.14 -5.02 16 17 C 0.17 7.68 5.25 83.58 0.44 8.12 16 18 N -0.60 -30.07 2.60 -707.82 -1.84 -31.91 16 19 C -0.26 -14.97 9.63 84.03 0.81 -14.16 16 20 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 21 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 22 N -0.92 -53.94 9.43 21.65 0.20 -53.73 16 23 Si 0.95 47.04 29.60 68.60 2.03 49.07 16 24 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 27 C 0.16 6.45 5.18 87.60 0.45 6.91 16 28 C -0.14 -5.36 5.98 31.87 0.19 -5.17 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.88 6.80 -2.38 -0.02 0.87 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.53 8.05 -2.38 -0.02 1.51 16 33 H 0.05 1.42 6.42 -2.39 -0.02 1.41 16 34 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.13 1.98 8.05 -2.38 -0.02 1.96 16 39 H 0.13 2.04 5.62 -2.39 -0.01 2.03 16 40 H 0.41 7.73 8.48 -92.70 -0.79 6.95 16 41 H 0.09 2.23 7.85 -2.39 -0.02 2.21 16 42 H 0.08 2.40 6.29 -2.39 -0.02 2.39 16 43 H 0.06 2.98 5.29 -2.39 -0.01 2.96 16 44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.05 2.91 6.05 -2.39 -0.01 2.90 16 46 H 0.03 1.36 8.12 -2.39 -0.02 1.34 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.02 1.04 7.99 -2.39 -0.02 1.02 16 49 H 0.06 2.11 6.88 -2.38 -0.02 2.10 16 50 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 51 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -76.24 390.62 3.29 -72.95 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.14 Total: 25.23 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.02 Total: -12.24 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.85 Total: -108.25 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.24 3.29 -72.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052487471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.850 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds