Wall clock time and date at job start Tue Mar 31 2020 16:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 C 1.38256 * 120.00221 * 265.02240 * 3 2 1 5 5 C 1.38214 * 120.00212 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99961 * 0.02562 * 5 4 3 7 7 C 1.38214 * 119.99704 * 359.70376 * 6 5 4 8 8 C 1.38217 * 119.99980 * 84.99802 * 3 2 1 9 9 C 1.50702 * 119.99678 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.46891 * 85.00214 * 9 8 3 11 11 O 1.21282 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00183 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00296 * 179.97438 * 12 10 9 14 14 H 1.09001 * 108.31567 * 327.39313 * 13 12 10 15 15 C 1.52566 * 108.51217 * 209.77021 * 13 12 10 16 16 C 1.50887 * 109.35682 * 153.73686 * 15 13 12 17 17 C 1.54296 * 110.23551 * 91.79835 * 16 15 13 18 18 N 1.47609 * 111.93994 * 319.69821 * 17 16 15 19 19 C 1.36938 * 118.64087 * 137.78219 * 18 17 16 20 20 H 1.07998 * 120.00120 * 207.41245 * 19 18 17 21 21 C 1.38815 * 120.00152 * 27.41023 * 19 18 17 22 22 N 1.31620 * 120.00064 * 16.09552 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 195.82288 * 21 19 18 24 24 H 1.48496 * 109.47187 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47115 * 119.99949 * 23 21 19 26 26 H 1.48494 * 109.47309 * 240.00119 * 23 21 19 27 27 C 1.44575 * 122.71569 * 317.49671 * 18 17 16 28 28 C 1.47093 * 108.50871 * 85.00349 * 13 12 10 29 29 H 1.08991 * 109.47200 * 300.00079 * 1 2 3 30 30 H 1.09004 * 109.46973 * 60.00419 * 1 2 3 31 31 H 1.09001 * 109.46601 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47397 * 240.00155 * 2 1 3 33 33 H 1.08993 * 109.47147 * 120.00016 * 2 1 3 34 34 H 1.07999 * 119.99985 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00336 * 180.02562 * 5 4 3 36 36 H 1.07991 * 120.00063 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.99837 * 180.29526 * 7 6 5 38 38 H 1.09000 * 109.47224 * 325.00172 * 9 8 3 39 39 H 1.08996 * 109.46623 * 204.99969 * 9 8 3 40 40 H 0.96997 * 119.99650 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.49032 * 273.69659 * 15 13 12 42 42 H 1.09001 * 109.49377 * 33.77085 * 15 13 12 43 43 H 1.08998 * 109.36397 * 212.07589 * 16 15 13 44 44 H 1.08993 * 109.36441 * 331.82100 * 16 15 13 45 45 H 1.09002 * 109.13865 * 199.01785 * 17 16 15 46 46 H 1.08993 * 108.96357 * 80.26469 * 17 16 15 47 47 H 0.96993 * 120.00136 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.45362 * 211.02501 * 27 18 17 49 49 H 1.08996 * 109.45179 * 330.97874 * 27 18 17 50 50 H 1.08997 * 109.33097 * 63.79791 * 28 13 12 51 51 H 1.09004 * 109.18942 * 304.22682 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0380 -1.1928 5 6 2.8210 3.3412 -1.1928 6 6 2.9535 4.0276 0.0000 7 6 2.6199 3.4125 1.1919 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9861 0.6378 2.9873 11 8 4.0159 0.6179 2.3470 12 7 2.8967 -0.0526 4.1415 13 6 4.0433 -0.8275 4.6222 14 1 4.5886 -1.2048 3.7571 15 6 3.5226 -2.0169 5.4233 16 6 4.5369 -3.1330 5.3779 17 6 5.5001 -3.0279 6.5787 18 7 5.8780 -1.6293 6.8618 19 6 5.9228 -1.2125 8.1654 20 1 5.7539 -0.1734 8.4062 21 6 6.1852 -2.1257 9.1775 22 7 6.6972 -3.3025 8.8855 23 14 5.8186 -1.6814 10.9544 24 1 5.2567 -0.3082 11.0156 25 1 4.8346 -2.6437 11.5124 26 1 7.0724 -1.7395 11.7480 27 6 6.2087 -0.6831 5.8199 28 6 4.9300 0.0705 5.3778 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2577 1.5017 -2.1245 35 1 3.0772 3.8234 -2.1246 36 1 3.3135 5.0457 0.0000 37 1 2.7189 3.9502 2.1233 38 1 0.9582 0.7681 2.3355 39 1 1.5426 2.1904 3.2321 40 1 2.0730 -0.0370 4.6534 41 1 3.3599 -1.7152 6.4580 42 1 2.5826 -2.3619 4.9926 43 1 4.0204 -4.0923 5.4118 44 1 5.1098 -3.0633 4.4534 45 1 6.4018 -3.6017 6.3648 46 1 5.0154 -3.4487 7.4595 47 1 6.8809 -3.9404 9.5927 48 1 6.9393 0.0322 6.1977 49 1 6.6293 -1.2150 4.9666 50 1 4.4050 0.4382 6.2594 51 1 5.2087 0.9139 4.7459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052487472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:35 Heat of formation + Delta-G solvation = -6.196003 kcal Electronic energy + Delta-G solvation = -28824.765414 eV Core-core repulsion = 25109.758058 eV Total energy + Delta-G solvation = -3715.007356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.38784 -39.20738 -37.52601 -34.76518 -34.44868 -32.82799 -32.29756 -31.57021 -30.10970 -29.60899 -27.65344 -25.95520 -24.14779 -23.90632 -23.25381 -22.15246 -20.90888 -20.19637 -19.91265 -19.17940 -16.98383 -16.75610 -16.52921 -16.19722 -15.78354 -15.18438 -15.07317 -14.53175 -14.14001 -13.98092 -13.86474 -13.62741 -13.59548 -13.39003 -13.19890 -13.05670 -12.76177 -12.56247 -12.24852 -12.02562 -11.94374 -11.91632 -11.47237 -11.38422 -11.23782 -10.96293 -10.85177 -10.83205 -10.67250 -10.42170 -10.24110 -10.08513 -9.89323 -9.75651 -9.61700 -9.53951 -8.88004 -8.75804 -8.66583 -8.39084 -6.62964 -5.76709 -3.20955 1.24121 1.31674 2.81367 3.33466 3.36447 3.44712 3.46447 3.76831 4.48810 4.50999 4.59915 4.76137 4.81911 4.97532 4.99308 5.07844 5.16640 5.24323 5.25907 5.35450 5.36491 5.41697 5.47898 5.49704 5.64239 5.70524 5.73658 5.75760 5.87839 5.98030 6.04311 6.06715 6.08602 6.24482 6.35759 6.37816 6.41033 6.49267 6.52322 6.55583 6.68283 6.77327 6.85470 6.87552 6.91791 6.95325 7.07756 7.43736 7.70878 7.74040 7.84477 8.43662 8.49558 9.26151 9.93077 10.39137 11.30587 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.002542 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.489571 B =11013.829352 C =11469.914077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.109 4.109 10 C 0.511 3.489 11 O -0.532 6.532 12 N -0.730 5.730 13 C 0.161 3.839 14 H 0.073 0.927 15 C -0.110 4.110 16 C -0.141 4.141 17 C 0.178 3.822 18 N -0.590 5.590 19 C -0.257 4.257 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.903 5.903 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.153 4.153 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.395 0.605 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.252 0.748 48 H 0.048 0.952 49 H 0.033 0.967 50 H 0.061 0.939 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 8.886 -17.399 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.149 4.149 10 C 0.296 3.704 11 O -0.409 6.409 12 N -0.381 5.381 13 C 0.059 3.941 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.180 4.180 17 C 0.053 3.947 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.729 3.271 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.033 3.967 28 C -0.194 4.194 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.228 0.772 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.435 8.702 -17.762 23.911 hybrid contribution -0.514 0.252 1.268 1.391 sum -13.949 8.954 -16.494 23.384 Atomic orbital electron populations 1.21771 0.94745 1.01799 1.02083 1.20567 0.95877 0.92929 1.03239 1.19658 0.98429 0.95679 0.92629 1.20962 1.00262 0.95196 0.97300 1.21085 0.99906 0.94846 0.97977 1.21055 1.00697 0.99973 0.92567 1.20982 0.98633 0.94500 0.98183 1.19119 0.99776 0.93910 0.93127 1.20784 0.97964 1.00179 0.95961 1.20393 0.89252 0.79785 0.80951 1.90726 1.31024 1.62492 1.56624 1.46518 1.17443 1.50421 1.23702 1.20010 0.85913 0.91133 0.97078 0.90891 1.21230 0.97600 0.94720 1.01309 1.22028 0.97997 0.96914 1.01077 1.21073 0.94432 0.85056 0.94142 1.43683 1.77897 1.07574 1.02010 1.19230 1.42169 0.94521 0.82729 0.91787 1.25049 0.99018 0.97275 0.98081 1.70079 1.45335 1.07852 1.31494 0.86285 0.77631 0.77787 0.85433 1.20322 1.21650 1.21775 1.20568 0.92484 0.92194 0.91408 1.21851 0.99788 0.98481 0.99296 0.92532 0.92530 0.92277 0.91018 0.90916 0.86310 0.86326 0.86239 0.86247 0.88038 0.88260 0.77219 0.90145 0.93232 0.92599 0.93441 0.95631 0.90952 0.93766 0.93397 0.94864 0.92023 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.72 37.16 0.36 -0.75 16 2 C -0.09 -0.87 5.38 -27.88 -0.15 -1.02 16 3 C -0.06 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.24 9.68 -39.58 -0.38 -1.63 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.10 -1.18 9.68 -39.58 -0.38 -1.56 16 8 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 9 C -0.11 -1.11 5.16 -29.04 -0.15 -1.26 16 10 C 0.51 7.13 6.87 -10.99 -0.08 7.05 16 11 O -0.53 -9.72 15.52 5.56 0.09 -9.64 16 12 N -0.73 -9.73 4.88 -56.82 -0.28 -10.01 16 13 C 0.16 2.67 1.95 -70.99 -0.14 2.54 16 14 H 0.07 1.36 6.65 -51.93 -0.35 1.01 16 15 C -0.11 -1.83 5.00 -28.01 -0.14 -1.97 16 16 C -0.14 -2.58 5.71 -27.11 -0.15 -2.74 16 17 C 0.18 4.15 4.70 -2.76 -0.01 4.14 16 18 N -0.59 -14.36 2.26 -171.87 -0.39 -14.74 16 19 C -0.26 -6.87 9.43 -15.06 -0.14 -7.01 16 20 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.12 4.85 -17.43 -0.08 0.03 16 22 N -0.90 -25.89 11.11 55.49 0.62 -25.27 16 23 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 C 0.16 3.48 5.65 -4.08 -0.02 3.46 16 28 C -0.15 -2.83 5.20 -28.58 -0.15 -2.98 16 29 H 0.06 0.41 6.80 -51.93 -0.35 0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.07 0.81 6.42 -51.93 -0.33 0.48 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.10 0.83 5.62 -51.93 -0.29 0.54 16 39 H 0.10 0.81 8.05 -51.93 -0.42 0.40 16 40 H 0.39 4.14 8.61 -40.82 -0.35 3.79 16 41 H 0.08 1.50 7.49 -51.93 -0.39 1.11 16 42 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 45 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 46 H 0.07 1.87 6.41 -51.93 -0.33 1.53 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 49 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -31.66 395.73 -11.07 -42.73 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.62 Total: 3.94 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.42 Total: -9.37 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.05 Total: -50.03 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.66 -11.07 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052487472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.534 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds