Wall clock time and date at job start Tue Mar 31 2020 16:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 C 1.38256 * 120.00221 * 265.02240 * 3 2 1 5 5 C 1.38214 * 120.00212 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99961 * 0.02562 * 5 4 3 7 7 C 1.38214 * 119.99704 * 359.70376 * 6 5 4 8 8 C 1.38217 * 119.99980 * 84.99802 * 3 2 1 9 9 C 1.50702 * 119.99678 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.46891 * 85.00214 * 9 8 3 11 11 O 1.21282 * 120.00084 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00183 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00296 * 179.97438 * 12 10 9 14 14 H 1.09001 * 108.31567 * 327.39313 * 13 12 10 15 15 C 1.52566 * 108.51217 * 209.77021 * 13 12 10 16 16 C 1.50887 * 109.35682 * 153.73686 * 15 13 12 17 17 C 1.54296 * 110.23551 * 91.79835 * 16 15 13 18 18 N 1.47609 * 111.93994 * 319.69821 * 17 16 15 19 19 C 1.36938 * 118.64087 * 137.78219 * 18 17 16 20 20 H 1.07998 * 120.00120 * 207.41245 * 19 18 17 21 21 C 1.38815 * 120.00152 * 27.41023 * 19 18 17 22 22 N 1.31620 * 120.00064 * 16.09552 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 195.82288 * 21 19 18 24 24 H 1.48496 * 109.47187 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47115 * 119.99949 * 23 21 19 26 26 H 1.48494 * 109.47309 * 240.00119 * 23 21 19 27 27 C 1.44575 * 122.71569 * 317.49671 * 18 17 16 28 28 C 1.47093 * 108.50871 * 85.00349 * 13 12 10 29 29 H 1.08991 * 109.47200 * 300.00079 * 1 2 3 30 30 H 1.09004 * 109.46973 * 60.00419 * 1 2 3 31 31 H 1.09001 * 109.46601 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47397 * 240.00155 * 2 1 3 33 33 H 1.08993 * 109.47147 * 120.00016 * 2 1 3 34 34 H 1.07999 * 119.99985 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00336 * 180.02562 * 5 4 3 36 36 H 1.07991 * 120.00063 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.99837 * 180.29526 * 7 6 5 38 38 H 1.09000 * 109.47224 * 325.00172 * 9 8 3 39 39 H 1.08996 * 109.46623 * 204.99969 * 9 8 3 40 40 H 0.96997 * 119.99650 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.49032 * 273.69659 * 15 13 12 42 42 H 1.09001 * 109.49377 * 33.77085 * 15 13 12 43 43 H 1.08998 * 109.36397 * 212.07589 * 16 15 13 44 44 H 1.08993 * 109.36441 * 331.82100 * 16 15 13 45 45 H 1.09002 * 109.13865 * 199.01785 * 17 16 15 46 46 H 1.08993 * 108.96357 * 80.26469 * 17 16 15 47 47 H 0.96993 * 120.00136 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.45362 * 211.02501 * 27 18 17 49 49 H 1.08996 * 109.45179 * 330.97874 * 27 18 17 50 50 H 1.08997 * 109.33097 * 63.79791 * 28 13 12 51 51 H 1.09004 * 109.18942 * 304.22682 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0380 -1.1928 5 6 2.8210 3.3412 -1.1928 6 6 2.9535 4.0276 0.0000 7 6 2.6199 3.4125 1.1919 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9861 0.6378 2.9873 11 8 4.0159 0.6179 2.3470 12 7 2.8967 -0.0526 4.1415 13 6 4.0433 -0.8275 4.6222 14 1 4.5886 -1.2048 3.7571 15 6 3.5226 -2.0169 5.4233 16 6 4.5369 -3.1330 5.3779 17 6 5.5001 -3.0279 6.5787 18 7 5.8780 -1.6293 6.8618 19 6 5.9228 -1.2125 8.1654 20 1 5.7539 -0.1734 8.4062 21 6 6.1852 -2.1257 9.1775 22 7 6.6972 -3.3025 8.8855 23 14 5.8186 -1.6814 10.9544 24 1 5.2567 -0.3082 11.0156 25 1 4.8346 -2.6437 11.5124 26 1 7.0724 -1.7395 11.7480 27 6 6.2087 -0.6831 5.8199 28 6 4.9300 0.0705 5.3778 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2577 1.5017 -2.1245 35 1 3.0772 3.8234 -2.1246 36 1 3.3135 5.0457 0.0000 37 1 2.7189 3.9502 2.1233 38 1 0.9582 0.7681 2.3355 39 1 1.5426 2.1904 3.2321 40 1 2.0730 -0.0370 4.6534 41 1 3.3599 -1.7152 6.4580 42 1 2.5826 -2.3619 4.9926 43 1 4.0204 -4.0923 5.4118 44 1 5.1098 -3.0633 4.4534 45 1 6.4018 -3.6017 6.3648 46 1 5.0154 -3.4487 7.4595 47 1 6.8809 -3.9404 9.5927 48 1 6.9393 0.0322 6.1977 49 1 6.6293 -1.2150 4.9666 50 1 4.4050 0.4382 6.2594 51 1 5.2087 0.9139 4.7459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052487472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:34 Heat of formation + Delta-G solvation = -22.746690 kcal Electronic energy + Delta-G solvation = -28825.483105 eV Core-core repulsion = 25109.758058 eV Total energy + Delta-G solvation = -3715.725047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41001 -40.25475 -38.98654 -36.34378 -35.18538 -34.13323 -33.47953 -33.28550 -31.68667 -30.34914 -28.66324 -27.66830 -25.70849 -25.02314 -24.63420 -23.03846 -21.84553 -21.51917 -21.19308 -20.74857 -18.58157 -18.04523 -17.55328 -17.01890 -16.97081 -16.91767 -15.98860 -15.83012 -15.62990 -15.35612 -15.21359 -14.94835 -14.62172 -14.40399 -14.27027 -14.14868 -13.93602 -13.82403 -13.59510 -13.19050 -13.01672 -12.99587 -12.80736 -12.73418 -12.63101 -12.37961 -12.18193 -12.07663 -12.02212 -11.75139 -11.67964 -11.55665 -11.50394 -11.49110 -11.33364 -10.81725 -10.45522 -10.01312 -9.66492 -9.44833 -8.64025 -7.84079 -5.31556 0.45527 0.53864 1.46448 1.48894 1.58889 1.73998 2.28766 2.52981 2.93730 3.29681 3.66133 3.69773 3.78635 3.87875 4.01518 4.08643 4.12188 4.16036 4.31937 4.34080 4.37251 4.44920 4.45716 4.51571 4.55678 4.65673 4.69972 4.74637 4.77147 4.78898 4.97669 5.00270 5.04876 5.09846 5.12576 5.15410 5.19259 5.25125 5.25967 5.34813 5.41599 5.50410 5.58599 5.61251 5.63319 5.65171 5.69731 5.77686 5.81424 6.17302 6.42749 6.68668 7.20142 7.37936 7.95145 8.35776 9.21224 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.002542 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.489571 B =11013.829352 C =11469.914077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.512 3.488 11 O -0.578 6.578 12 N -0.719 5.719 13 C 0.169 3.831 14 H 0.056 0.944 15 C -0.100 4.100 16 C -0.129 4.129 17 C 0.187 3.813 18 N -0.601 5.601 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.296 1.296 27 C 0.159 3.841 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.413 0.587 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.050 0.950 45 H -0.009 1.009 46 H 0.044 0.956 47 H 0.249 0.751 48 H 0.035 0.965 49 H 0.032 0.968 50 H 0.056 0.944 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 9.928 -18.138 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.370 5.370 13 C 0.065 3.935 14 H 0.074 0.926 15 C -0.138 4.138 16 C -0.169 4.169 17 C 0.062 3.938 18 N -0.323 5.323 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.582 5.582 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.215 1.215 26 H -0.223 1.223 27 C 0.031 3.969 28 C -0.174 4.174 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.249 0.751 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.958 9.773 -18.510 26.321 hybrid contribution 0.341 -0.033 1.415 1.456 sum -15.617 9.740 -17.095 25.120 Atomic orbital electron populations 1.21741 0.92977 1.02583 1.02563 1.20564 0.97371 0.92021 1.02502 1.19937 0.98601 0.96357 0.92962 1.21262 1.00232 0.95698 0.97858 1.21415 0.99274 0.94842 0.98878 1.21368 1.00565 1.00962 0.92542 1.21252 0.98892 0.94833 0.99002 1.19346 1.00482 0.94307 0.93777 1.20787 0.96627 1.00529 0.95918 1.21031 0.89637 0.79155 0.80242 1.90711 1.33141 1.64007 1.57905 1.46282 1.17136 1.49790 1.23833 1.19658 0.86709 0.91136 0.95974 0.92621 1.21113 0.98429 0.93831 1.00404 1.21883 0.97518 0.99012 0.98447 1.20870 0.93868 0.83988 0.95060 1.43857 1.78320 1.08173 1.01954 1.19490 1.41212 0.94544 0.83948 0.91868 1.25770 0.99357 0.97354 1.01785 1.70238 1.46798 1.08824 1.32334 0.85272 0.76973 0.77923 0.80653 1.19119 1.21512 1.22333 1.20649 0.93907 0.91674 0.90629 1.21579 0.98425 0.98264 0.99108 0.91948 0.92158 0.91310 0.90984 0.92401 0.84832 0.84212 0.84490 0.85409 0.85738 0.85856 0.75112 0.91971 0.89655 0.90404 0.93125 0.99100 0.93741 0.94215 0.94614 0.94966 0.92529 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.72 71.98 0.70 -1.11 16 2 C -0.09 -1.58 5.38 29.85 0.16 -1.42 16 3 C -0.08 -1.66 5.13 -19.87 -0.10 -1.76 16 4 C -0.13 -2.60 9.68 22.27 0.22 -2.38 16 5 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 6 C -0.14 -2.63 10.05 22.27 0.22 -2.41 16 7 C -0.12 -2.57 9.68 22.27 0.22 -2.36 16 8 C -0.08 -1.70 4.37 -19.86 -0.09 -1.79 16 9 C -0.10 -1.78 5.16 29.10 0.15 -1.63 16 10 C 0.51 13.36 6.87 87.66 0.60 13.96 16 11 O -0.58 -20.75 15.52 -3.03 -0.05 -20.80 16 12 N -0.72 -17.45 4.88 -452.06 -2.21 -19.66 16 13 C 0.17 5.37 1.95 43.01 0.08 5.46 16 14 H 0.06 2.02 6.65 -2.39 -0.02 2.00 16 15 C -0.10 -3.10 5.00 29.76 0.15 -2.95 16 16 C -0.13 -4.63 5.71 30.35 0.17 -4.45 16 17 C 0.19 8.93 4.70 86.61 0.41 9.34 16 18 N -0.60 -29.77 2.26 -697.68 -1.58 -31.35 16 19 C -0.26 -14.16 9.43 84.03 0.79 -13.37 16 20 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 21 C -0.05 -2.62 4.85 84.86 0.41 -2.20 16 22 N -0.94 -55.09 11.11 21.65 0.24 -54.85 16 23 Si 0.96 44.44 29.58 68.60 2.03 46.47 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 27 C 0.16 6.93 5.65 87.38 0.49 7.43 16 28 C -0.13 -4.83 5.20 29.40 0.15 -4.68 16 29 H 0.06 0.72 6.80 -2.39 -0.02 0.70 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.25 8.05 -2.38 -0.02 1.23 16 33 H 0.06 1.21 6.42 -2.39 -0.02 1.19 16 34 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.14 2.01 8.06 -2.92 -0.02 1.99 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.12 1.64 5.62 -2.39 -0.01 1.63 16 39 H 0.12 1.61 8.05 -2.39 -0.02 1.59 16 40 H 0.41 7.26 8.61 -92.71 -0.80 6.46 16 41 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 42 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 1.79 7.32 -2.39 -0.02 1.77 16 45 H -0.01 -0.49 8.02 -2.39 -0.02 -0.51 16 46 H 0.04 2.35 6.41 -2.39 -0.02 2.34 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 49 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 50 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 Total: -1.00 -70.32 395.73 3.52 -66.80 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.11 Total: 21.81 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.97 Total: -8.43 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.54 Total: -105.85 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.32 3.52 -66.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052487472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.058 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds