Wall clock time and date at job start Tue Mar 31 2020 16:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47463 * 2 1 4 4 C 1.38262 * 120.00286 * 269.98483 * 3 2 1 5 5 C 1.38206 * 120.00576 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99410 * 359.74259 * 5 4 3 7 7 C 1.38212 * 120.00136 * 0.52643 * 6 5 4 8 8 C 1.50704 * 120.00094 * 179.74440 * 7 6 5 9 9 C 1.50699 * 109.47485 * 269.73285 * 8 7 6 10 10 O 1.21283 * 119.99486 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00127 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99983 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.32520 * 37.00290 * 12 11 9 14 14 C 1.50121 * 110.24950 * 159.01845 * 12 11 9 15 15 C 1.54846 * 110.81557 * 216.65312 * 14 12 11 16 16 C 1.54409 * 110.06959 * 321.07686 * 15 14 12 17 17 N 1.43431 * 116.38784 * 318.64859 * 16 15 14 18 18 C 1.36934 * 120.53818 * 271.73183 * 17 16 15 19 19 H 1.07998 * 120.00082 * 336.78708 * 18 17 16 20 20 C 1.38810 * 120.00540 * 156.78827 * 18 17 16 21 21 N 1.31625 * 119.99664 * 340.00681 * 20 18 17 22 22 Si 1.86796 * 120.00518 * 159.73219 * 20 18 17 23 23 H 1.48499 * 109.47291 * 90.00032 * 22 20 18 24 24 H 1.48496 * 109.47290 * 210.00287 * 22 20 18 25 25 H 1.48505 * 109.47054 * 329.99999 * 22 20 18 26 26 C 1.50168 * 118.92685 * 91.45779 * 17 16 15 27 27 C 1.46246 * 107.53307 * 289.83827 * 26 17 16 28 28 C 1.38211 * 120.00170 * 89.99334 * 3 2 1 29 29 H 1.09006 * 109.46774 * 299.99822 * 1 2 3 30 30 H 1.08997 * 109.46952 * 60.00121 * 1 2 3 31 31 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47368 * 239.99873 * 2 1 3 33 33 H 1.09000 * 109.47684 * 119.99835 * 2 1 3 34 34 H 1.08008 * 119.99451 * 359.97139 * 4 3 2 35 35 H 1.07995 * 120.00523 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.99987 * 180.27787 * 6 5 4 37 37 H 1.09002 * 109.47494 * 149.72759 * 8 7 6 38 38 H 1.09007 * 109.46665 * 29.72965 * 8 7 6 39 39 H 0.96993 * 120.00376 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.20848 * 336.99791 * 14 12 11 41 41 H 1.09003 * 109.20767 * 96.31084 * 14 12 11 42 42 H 1.09002 * 109.35766 * 81.33812 * 15 14 12 43 43 H 1.08995 * 109.36067 * 201.06056 * 15 14 12 44 44 H 1.09001 * 107.88395 * 196.93267 * 16 15 14 45 45 H 1.09000 * 108.09918 * 80.53272 * 16 15 14 46 46 H 0.96997 * 120.00079 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.84712 * 49.34594 * 26 17 16 48 48 H 1.08999 * 109.84629 * 170.26886 * 26 17 16 49 49 H 1.09000 * 108.51960 * 179.64883 * 27 26 17 50 50 H 1.08997 * 108.52123 * 297.32674 * 27 26 17 51 51 H 1.08000 * 119.99792 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2632 2.0725 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9480 4.0294 0.0000 7 6 2.7226 3.3761 1.1969 8 6 2.9729 4.0869 2.5020 9 6 4.3961 3.8507 2.9379 10 8 5.1342 3.1717 2.2560 11 7 4.8481 4.3932 4.0858 12 6 6.2315 4.1631 4.5097 13 1 6.8956 4.1526 3.6454 14 6 6.6603 5.2238 5.4817 15 6 8.1457 5.6025 5.2630 16 6 8.9724 4.3393 4.9387 17 7 8.6681 3.1646 5.7033 18 6 9.2958 2.9298 6.8974 19 1 10.2541 3.3838 7.1022 20 6 8.7005 2.1081 7.8447 21 7 7.4064 1.8737 7.7925 22 14 9.7373 1.3290 9.1892 23 1 9.7835 2.2338 10.3657 24 1 9.1373 0.0301 9.5868 25 1 11.1153 1.1035 8.6836 26 6 7.6455 2.1995 5.1762 27 6 6.3377 2.8468 5.2730 28 6 2.2627 2.0724 1.1969 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0838 1.5631 -2.1327 35 1 2.9041 3.8846 -2.1327 36 1 3.3034 5.0493 0.0000 37 1 2.2919 3.7027 3.2615 38 1 2.8056 5.1561 2.3714 39 1 4.2577 4.9359 4.6313 40 1 6.0402 6.1094 5.3427 41 1 6.5309 4.8521 6.4982 42 1 8.2207 6.3077 4.4352 43 1 8.5376 6.0655 6.1686 44 1 10.0247 4.5800 5.0898 45 1 8.8314 4.1040 3.8837 46 1 6.9904 1.2993 8.4542 47 1 7.8640 1.9607 4.1354 48 1 7.6536 1.2884 5.7744 49 1 5.5827 2.1613 4.8880 50 1 6.1242 3.0405 6.3242 51 1 2.0821 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052502964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:38 Heat of formation + Delta-G solvation = 0.021494 kcal Electronic energy + Delta-G solvation = -28650.456331 eV Core-core repulsion = 24935.718586 eV Total energy + Delta-G solvation = -3714.737745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.06152 -39.10723 -37.54476 -34.64908 -34.37406 -32.64558 -32.30994 -30.90094 -30.43164 -29.58530 -27.66545 -25.95994 -24.06529 -23.82340 -23.07652 -22.15401 -20.89605 -19.94002 -19.83800 -19.03743 -16.73158 -16.68142 -16.49684 -15.86299 -15.72530 -15.03868 -14.87308 -14.60221 -13.93279 -13.91183 -13.79693 -13.75114 -13.65518 -13.26879 -13.19585 -12.94979 -12.76275 -12.20105 -12.12205 -11.87345 -11.83563 -11.72895 -11.40383 -11.35468 -11.19624 -10.95146 -10.84907 -10.75143 -10.71839 -10.32264 -10.16470 -9.94426 -9.78202 -9.50970 -9.46702 -9.22237 -8.78186 -8.61659 -8.59327 -8.27433 -6.68677 -5.76539 -3.14663 1.32052 1.39776 2.97140 3.38866 3.46565 3.46760 3.49957 3.88082 4.53467 4.57151 4.62268 4.78153 4.99342 5.06727 5.13273 5.17160 5.21455 5.34528 5.36709 5.39578 5.44220 5.49112 5.55394 5.65504 5.71343 5.73355 5.74452 5.79736 5.95316 6.05188 6.08707 6.15675 6.31162 6.34876 6.43447 6.50541 6.54684 6.59993 6.60421 6.70816 6.89151 6.92467 6.96120 6.99793 7.12395 7.16292 7.33301 7.63242 7.76907 7.90721 7.99850 8.45684 8.61100 9.21949 9.90250 10.44004 11.30665 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.002680 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.423343 B =10446.070156 C =11408.262407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.510 3.490 10 O -0.531 6.531 11 N -0.722 5.722 12 C 0.147 3.853 13 H 0.082 0.918 14 C -0.112 4.112 15 C -0.140 4.140 16 C 0.154 3.846 17 N -0.588 5.588 18 C -0.246 4.246 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.169 3.831 27 C -0.131 4.131 28 C -0.101 4.101 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.393 0.607 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.251 0.749 47 H 0.009 0.991 48 H 0.090 0.910 49 H 0.028 0.972 50 H 0.100 0.900 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 4.112 -13.864 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.057 4.057 8 C -0.145 4.145 9 C 0.295 3.705 10 O -0.407 6.407 11 N -0.373 5.373 12 C 0.043 3.957 13 H 0.100 0.900 14 C -0.150 4.150 15 C -0.181 4.181 16 C 0.025 3.975 17 N -0.309 5.309 18 C -0.375 4.375 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.045 3.955 27 C -0.170 4.170 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.108 0.892 49 H 0.047 0.953 50 H 0.119 0.881 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.298 3.473 -14.241 20.477 hybrid contribution 0.117 0.032 1.188 1.194 sum -14.181 3.504 -13.053 19.590 Atomic orbital electron populations 1.21740 0.94836 1.01585 1.02086 1.20544 0.96012 0.92802 1.02988 1.19820 0.99210 0.96058 0.93094 1.20959 1.00674 0.95020 0.97314 1.21035 0.99762 0.94991 0.97764 1.20937 0.99955 0.99978 0.92022 1.19264 0.98414 0.94338 0.93680 1.20719 0.95468 1.02155 0.96173 1.20368 0.89046 0.79953 0.81152 1.90730 1.57935 1.38037 1.53985 1.46295 1.14537 1.53026 1.23409 1.20471 0.80370 0.97341 0.97469 0.90024 1.21698 0.96481 0.96351 1.00487 1.22756 0.95494 0.99838 1.00055 1.20331 0.96212 0.86851 0.94134 1.44286 1.47154 1.17862 1.21623 1.19200 0.99367 1.26802 0.92157 0.91561 1.24877 0.95108 1.02375 0.97353 1.69974 1.08003 1.40166 1.36459 0.86356 0.80017 0.78905 0.81841 1.21676 1.21697 1.20682 1.20090 0.86613 0.94561 0.94206 1.21311 0.99225 0.94166 1.02321 1.20851 0.99524 0.93935 0.97644 0.92557 0.92691 0.92490 0.91112 0.90905 0.86460 0.86260 0.86419 0.88194 0.88311 0.77373 0.94165 0.90144 0.93695 0.92671 0.94957 0.95328 0.93854 0.97310 0.89166 0.95300 0.88131 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.09 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.08 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 5 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 6 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.11 -1.18 5.83 -29.03 -0.17 -1.34 16 9 C 0.51 7.99 7.68 -10.99 -0.08 7.90 16 10 O -0.53 -10.76 15.76 5.56 0.09 -10.67 16 11 N -0.72 -10.95 5.01 -55.44 -0.28 -11.23 16 12 C 0.15 2.75 2.17 -69.60 -0.15 2.60 16 13 H 0.08 1.71 5.83 -51.93 -0.30 1.41 16 14 C -0.11 -2.03 5.30 -27.19 -0.14 -2.18 16 15 C -0.14 -2.60 6.40 -25.02 -0.16 -2.76 16 16 C 0.15 3.29 5.13 -4.93 -0.03 3.26 16 17 N -0.59 -14.58 2.61 -175.40 -0.46 -15.03 16 18 C -0.25 -6.61 9.62 -15.06 -0.14 -6.76 16 19 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 20 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16 21 N -0.90 -24.72 9.44 55.49 0.52 -24.20 16 22 Si 0.90 21.49 29.60 -169.99 -5.03 16.45 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.17 4.14 5.25 -5.20 -0.03 4.11 16 27 C -0.13 -2.88 4.74 -30.18 -0.14 -3.03 16 28 C -0.10 -1.27 9.36 -39.59 -0.37 -1.64 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.10 0.84 8.08 -51.93 -0.42 0.43 16 39 H 0.39 4.70 8.45 -40.82 -0.34 4.36 16 40 H 0.04 0.61 7.81 -51.93 -0.41 0.21 16 41 H 0.08 1.71 6.82 -51.93 -0.35 1.35 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 45 H 0.03 0.60 6.89 -51.93 -0.36 0.24 16 46 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 47 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 48 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 49 H 0.03 0.64 7.90 -51.93 -0.41 0.23 16 50 H 0.10 2.47 5.30 -51.93 -0.28 2.19 16 51 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -31.04 397.67 -11.27 -42.31 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.63 Total: 5.75 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.47 Total: -9.38 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.21 Total: -50.46 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.04 -11.27 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052502964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.328 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds