Wall clock time and date at job start Tue Mar 31 2020 16:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47463 * 2 1 4 4 C 1.38262 * 120.00286 * 269.98483 * 3 2 1 5 5 C 1.38206 * 120.00576 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99410 * 359.74259 * 5 4 3 7 7 C 1.38212 * 120.00136 * 0.52643 * 6 5 4 8 8 C 1.50704 * 120.00094 * 179.74440 * 7 6 5 9 9 C 1.50699 * 109.47485 * 269.73285 * 8 7 6 10 10 O 1.21283 * 119.99486 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00127 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99983 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.32520 * 37.00290 * 12 11 9 14 14 C 1.50121 * 110.24950 * 159.01845 * 12 11 9 15 15 C 1.54846 * 110.81557 * 216.65312 * 14 12 11 16 16 C 1.54409 * 110.06959 * 321.07686 * 15 14 12 17 17 N 1.43431 * 116.38784 * 318.64859 * 16 15 14 18 18 C 1.36934 * 120.53818 * 271.73183 * 17 16 15 19 19 H 1.07998 * 120.00082 * 336.78708 * 18 17 16 20 20 C 1.38810 * 120.00540 * 156.78827 * 18 17 16 21 21 N 1.31625 * 119.99664 * 340.00681 * 20 18 17 22 22 Si 1.86796 * 120.00518 * 159.73219 * 20 18 17 23 23 H 1.48499 * 109.47291 * 90.00032 * 22 20 18 24 24 H 1.48496 * 109.47290 * 210.00287 * 22 20 18 25 25 H 1.48505 * 109.47054 * 329.99999 * 22 20 18 26 26 C 1.50168 * 118.92685 * 91.45779 * 17 16 15 27 27 C 1.46246 * 107.53307 * 289.83827 * 26 17 16 28 28 C 1.38211 * 120.00170 * 89.99334 * 3 2 1 29 29 H 1.09006 * 109.46774 * 299.99822 * 1 2 3 30 30 H 1.08997 * 109.46952 * 60.00121 * 1 2 3 31 31 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47368 * 239.99873 * 2 1 3 33 33 H 1.09000 * 109.47684 * 119.99835 * 2 1 3 34 34 H 1.08008 * 119.99451 * 359.97139 * 4 3 2 35 35 H 1.07995 * 120.00523 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.99987 * 180.27787 * 6 5 4 37 37 H 1.09002 * 109.47494 * 149.72759 * 8 7 6 38 38 H 1.09007 * 109.46665 * 29.72965 * 8 7 6 39 39 H 0.96993 * 120.00376 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.20848 * 336.99791 * 14 12 11 41 41 H 1.09003 * 109.20767 * 96.31084 * 14 12 11 42 42 H 1.09002 * 109.35766 * 81.33812 * 15 14 12 43 43 H 1.08995 * 109.36067 * 201.06056 * 15 14 12 44 44 H 1.09001 * 107.88395 * 196.93267 * 16 15 14 45 45 H 1.09000 * 108.09918 * 80.53272 * 16 15 14 46 46 H 0.96997 * 120.00079 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.84712 * 49.34594 * 26 17 16 48 48 H 1.08999 * 109.84629 * 170.26886 * 26 17 16 49 49 H 1.09000 * 108.51960 * 179.64883 * 27 26 17 50 50 H 1.08997 * 108.52123 * 297.32674 * 27 26 17 51 51 H 1.08000 * 119.99792 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2632 2.0725 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9480 4.0294 0.0000 7 6 2.7226 3.3761 1.1969 8 6 2.9729 4.0869 2.5020 9 6 4.3961 3.8507 2.9379 10 8 5.1342 3.1717 2.2560 11 7 4.8481 4.3932 4.0858 12 6 6.2315 4.1631 4.5097 13 1 6.8956 4.1526 3.6454 14 6 6.6603 5.2238 5.4817 15 6 8.1457 5.6025 5.2630 16 6 8.9724 4.3393 4.9387 17 7 8.6681 3.1646 5.7033 18 6 9.2958 2.9298 6.8974 19 1 10.2541 3.3838 7.1022 20 6 8.7005 2.1081 7.8447 21 7 7.4064 1.8737 7.7925 22 14 9.7373 1.3290 9.1892 23 1 9.7835 2.2338 10.3657 24 1 9.1373 0.0301 9.5868 25 1 11.1153 1.1035 8.6836 26 6 7.6455 2.1995 5.1762 27 6 6.3377 2.8468 5.2730 28 6 2.2627 2.0724 1.1969 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0838 1.5631 -2.1327 35 1 2.9041 3.8846 -2.1327 36 1 3.3034 5.0493 0.0000 37 1 2.2919 3.7027 3.2615 38 1 2.8056 5.1561 2.3714 39 1 4.2577 4.9359 4.6313 40 1 6.0402 6.1094 5.3427 41 1 6.5309 4.8521 6.4982 42 1 8.2207 6.3077 4.4352 43 1 8.5376 6.0655 6.1686 44 1 10.0247 4.5800 5.0898 45 1 8.8314 4.1040 3.8837 46 1 6.9904 1.2993 8.4542 47 1 7.8640 1.9607 4.1354 48 1 7.6536 1.2884 5.7744 49 1 5.5827 2.1613 4.8880 50 1 6.1242 3.0405 6.3242 51 1 2.0821 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052502964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:37 Heat of formation + Delta-G solvation = -15.953416 kcal Electronic energy + Delta-G solvation = -28651.149055 eV Core-core repulsion = 24935.718586 eV Total energy + Delta-G solvation = -3715.430469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23986 -40.22514 -39.09811 -36.18463 -35.29375 -34.22545 -33.39916 -32.63229 -32.15408 -30.37882 -28.76227 -27.67946 -25.45394 -24.93943 -24.78494 -23.08983 -22.02931 -21.61427 -21.05207 -20.50680 -18.59389 -17.92883 -17.50180 -17.07413 -16.82999 -16.72964 -15.95450 -15.78364 -15.65932 -15.44975 -15.28430 -14.94282 -14.64059 -14.54770 -14.33654 -14.01743 -13.79162 -13.70235 -13.50124 -13.24957 -13.07349 -12.93982 -12.80430 -12.63554 -12.60066 -12.54895 -12.14826 -12.06597 -11.86178 -11.71645 -11.69590 -11.65402 -11.61924 -11.20328 -11.03214 -10.81638 -10.50426 -9.87096 -9.65750 -9.46872 -8.67940 -7.82315 -5.22738 0.45063 0.53471 1.46879 1.50486 1.58636 1.75183 2.31770 2.54571 2.93982 3.31162 3.57516 3.70054 3.84032 3.99341 4.03725 4.05751 4.19020 4.24979 4.27230 4.30381 4.40722 4.50835 4.53623 4.59319 4.62440 4.64878 4.68089 4.70982 4.80198 4.86181 4.93853 5.02352 5.08774 5.10646 5.20000 5.22045 5.23323 5.24560 5.33111 5.38076 5.38134 5.53524 5.59558 5.63488 5.69011 5.69673 5.75206 5.76876 6.06536 6.17022 6.41702 6.70987 7.16431 7.40752 7.89699 8.42545 9.22467 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.002680 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.423343 B =10446.070156 C =11408.262407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.075 4.075 8 C -0.094 4.094 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.712 5.712 12 C 0.162 3.838 13 H 0.064 0.936 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.600 5.600 18 C -0.259 4.259 19 H 0.064 0.936 20 C -0.043 4.043 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.114 4.114 28 C -0.124 4.124 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.412 0.588 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.247 0.753 47 H 0.004 0.996 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.078 0.922 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.861 5.745 -14.732 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.133 4.133 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.364 5.364 12 C 0.058 3.942 13 H 0.082 0.918 14 C -0.141 4.141 15 C -0.174 4.174 16 C 0.019 3.981 17 N -0.322 5.322 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.239 4.239 21 N -0.563 5.563 22 Si 0.787 3.213 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.204 1.204 26 C 0.051 3.949 27 C -0.154 4.154 28 C -0.142 4.142 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.249 0.751 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.022 0.978 48 H 0.077 0.923 49 H 0.035 0.965 50 H 0.096 0.904 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.403 5.151 -15.103 22.178 hybrid contribution 0.485 -0.514 1.380 1.550 sum -14.918 4.637 -13.723 20.794 Atomic orbital electron populations 1.21702 0.93568 1.02401 1.02076 1.20586 0.97097 0.91687 1.03034 1.20127 0.99004 0.97012 0.93137 1.21276 1.00260 0.95268 0.97951 1.21389 0.99069 0.95190 0.98553 1.21222 1.00103 1.00821 0.92194 1.19498 0.98848 0.94590 0.94568 1.20733 0.92209 1.04295 0.96093 1.21167 0.90440 0.78495 0.80315 1.90712 1.59687 1.40181 1.55469 1.46110 1.13392 1.53156 1.23713 1.20030 0.82293 0.95571 0.96335 0.91780 1.21541 0.96993 0.97399 0.98181 1.22649 0.94991 0.98587 1.01124 1.20473 0.96825 0.87073 0.93737 1.44336 1.47251 1.19275 1.21366 1.19398 0.99526 1.27192 0.92836 0.91795 1.25520 0.96055 1.02915 0.99394 1.70118 1.08935 1.40290 1.36918 0.85430 0.78585 0.77684 0.79583 1.21248 1.22170 1.20430 1.19899 0.88170 0.93878 0.93002 1.21080 0.97301 0.95678 1.01353 1.21043 1.00572 0.94473 0.98123 0.93018 0.92220 0.91257 0.90229 0.91682 0.84444 0.84054 0.85086 0.86056 0.84915 0.75096 0.90282 0.93354 0.90436 0.93009 0.94959 0.95083 0.94380 0.97830 0.92341 0.96535 0.90381 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.30 16 2 C -0.09 -1.56 6.06 29.85 0.18 -1.38 16 3 C -0.09 -2.08 5.13 -19.86 -0.10 -2.18 16 4 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 5 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 6 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 7 C -0.07 -1.79 4.37 -19.87 -0.09 -1.88 16 8 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 9 C 0.51 15.29 7.68 87.66 0.67 15.96 16 10 O -0.58 -23.59 15.76 -3.04 -0.05 -23.64 16 11 N -0.71 -20.36 5.01 -447.71 -2.24 -22.60 16 12 C 0.16 5.98 2.17 43.91 0.10 6.08 16 13 H 0.06 2.65 5.83 -2.39 -0.01 2.64 16 14 C -0.10 -3.57 5.30 30.30 0.16 -3.41 16 15 C -0.13 -4.67 6.40 31.70 0.20 -4.47 16 16 C 0.15 6.22 5.13 87.43 0.45 6.67 16 17 N -0.60 -30.28 2.61 -708.85 -1.85 -32.14 16 18 C -0.26 -14.17 9.62 84.03 0.81 -13.36 16 19 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 20 C -0.04 -2.35 4.90 84.86 0.42 -1.94 16 21 N -0.92 -51.60 9.44 21.65 0.20 -51.40 16 22 Si 0.96 44.77 29.60 68.60 2.03 46.80 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 C 0.17 8.86 5.25 83.58 0.44 9.29 16 27 C -0.11 -5.18 4.74 28.36 0.13 -5.04 16 28 C -0.12 -3.08 9.36 22.27 0.21 -2.87 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.12 1.93 8.09 -2.39 -0.02 1.91 16 38 H 0.13 1.77 8.08 -2.38 -0.02 1.75 16 39 H 0.41 8.69 8.45 -92.71 -0.78 7.90 16 40 H 0.08 2.13 7.81 -2.39 -0.02 2.11 16 41 H 0.05 2.02 6.82 -2.39 -0.02 2.00 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 44 H 0.03 1.35 7.99 -2.39 -0.02 1.33 16 45 H 0.03 1.28 6.89 -2.39 -0.02 1.27 16 46 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 47 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 48 H 0.06 3.31 6.04 -2.39 -0.01 3.30 16 49 H 0.02 0.75 7.90 -2.39 -0.02 0.73 16 50 H 0.08 3.93 5.30 -2.39 -0.01 3.92 16 51 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -69.25 397.67 3.33 -65.92 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.13 Total: 25.92 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.12 Total: -8.87 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -3.89 Total: -106.14 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.25 3.33 -65.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052502964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.966 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds