Wall clock time and date at job start Tue Mar 31 2020 16:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47055 * 2 1 4 4 C 1.38235 * 119.99522 * 90.00448 * 3 2 1 5 5 C 1.38235 * 119.99999 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99895 * 359.97145 * 5 4 3 7 7 C 1.50698 * 119.99783 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47187 * 90.00389 * 7 6 5 9 9 O 1.21281 * 120.00170 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00361 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00496 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.21192 * 36.93693 * 11 10 8 13 13 C 1.50131 * 110.25034 * 159.01638 * 11 10 8 14 14 C 1.54841 * 110.81932 * 216.65761 * 13 11 10 15 15 C 1.54901 * 110.13817 * 321.13550 * 14 13 11 16 16 N 1.43427 * 116.08503 * 318.64043 * 15 14 13 17 17 C 1.36938 * 120.53433 * 271.84777 * 16 15 14 18 18 H 1.08005 * 120.00375 * 336.58662 * 17 16 15 19 19 C 1.38813 * 120.00189 * 156.59334 * 17 16 15 20 20 N 1.31620 * 120.00003 * 340.36999 * 19 17 16 21 21 Si 1.86800 * 120.00241 * 160.36188 * 19 17 16 22 22 H 1.48505 * 109.46863 * 60.00432 * 21 19 17 23 23 H 1.48503 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47471 * 300.00290 * 21 19 17 25 25 C 1.50168 * 118.92889 * 91.56816 * 16 15 14 26 26 C 1.46240 * 107.53123 * 289.59210 * 25 16 15 27 27 C 1.38234 * 119.99698 * 0.27852 * 6 5 4 28 28 C 1.38231 * 120.00106 * 359.53675 * 27 6 5 29 29 H 1.09006 * 109.47189 * 59.99577 * 1 2 3 30 30 H 1.09000 * 109.47536 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46892 * 299.99726 * 1 2 3 32 32 H 1.09000 * 109.46892 * 240.00274 * 2 1 3 33 33 H 1.08997 * 109.47096 * 120.00674 * 2 1 3 34 34 H 1.07997 * 120.00364 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00181 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47276 * 330.00108 * 7 6 5 37 37 H 1.08998 * 109.46623 * 210.00124 * 7 6 5 38 38 H 0.97002 * 119.99326 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.20847 * 337.01084 * 13 11 10 40 40 H 1.09006 * 109.20221 * 96.36004 * 13 11 10 41 41 H 1.08998 * 109.35608 * 81.33963 * 14 13 11 42 42 H 1.08995 * 109.35897 * 200.93148 * 14 13 11 43 43 H 1.09004 * 108.15391 * 196.92055 * 15 14 13 44 44 H 1.09007 * 108.16022 * 80.36184 * 15 14 13 45 45 H 0.96996 * 120.00343 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.84820 * 49.09749 * 25 16 15 47 47 H 1.08994 * 109.84643 * 170.02133 * 25 16 15 48 48 H 1.08993 * 108.52490 * 179.65163 * 26 25 16 49 49 H 1.09000 * 108.52137 * 297.16714 * 26 25 16 50 50 H 1.07999 * 119.99846 * 179.72302 * 27 6 5 51 51 H 1.08004 * 120.00356 * 180.22695 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9554 4.0269 0.0002 7 6 3.4588 5.4473 0.0003 8 6 4.9657 5.4462 0.0009 9 8 5.5714 4.3954 0.0016 10 7 5.6406 6.6128 0.0006 11 6 7.1055 6.6118 0.0017 12 1 7.4820 5.7935 -0.6122 13 6 7.6265 7.9261 -0.5032 14 6 8.9067 7.7220 -1.3499 15 6 9.7940 6.6206 -0.7181 16 7 9.9080 6.6455 0.7114 17 6 10.8800 7.3947 1.3188 18 1 11.7755 7.6598 0.7764 19 6 10.7146 7.8133 2.6319 20 7 9.5125 7.8408 3.1674 21 14 12.1979 8.3375 3.6391 22 1 12.8641 9.4879 2.9772 23 1 11.7563 8.7378 4.9993 24 1 13.1523 7.2046 3.7414 25 6 8.9402 5.8417 1.5314 26 6 7.6323 6.4876 1.4276 27 6 2.7200 3.3770 -1.1970 28 6 2.2624 2.0727 -1.1971 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9037 3.8847 2.1326 36 1 3.0955 5.9614 0.8901 37 1 3.0962 5.9613 -0.8898 38 1 5.1562 7.4532 0.0004 39 1 6.8624 8.4027 -1.1174 40 1 7.8574 8.5701 0.3454 41 1 8.6277 7.4256 -2.3610 42 1 9.4657 8.6569 -1.3908 43 1 10.7951 6.7072 -1.1404 44 1 9.3909 5.6507 -1.0100 45 1 9.3968 8.1336 4.0849 46 1 8.8824 4.8246 1.1438 47 1 9.2633 5.8231 2.5721 48 1 6.9148 5.9127 2.0130 49 1 7.7042 7.4862 1.8584 50 1 2.8965 3.8874 -2.1322 51 1 2.0820 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052757493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:45 Heat of formation + Delta-G solvation = -0.093788 kcal Electronic energy + Delta-G solvation = -28476.264115 eV Core-core repulsion = 24761.521371 eV Total energy + Delta-G solvation = -3714.742744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04829 -39.11134 -37.54300 -34.80231 -34.40512 -32.50594 -31.56386 -30.93930 -30.74022 -30.30440 -27.38366 -25.95509 -24.03829 -23.14341 -23.06369 -22.76943 -20.89189 -20.03109 -19.91544 -19.08417 -16.70556 -16.65931 -16.33777 -15.90010 -15.61502 -15.06331 -14.87191 -14.59594 -13.92230 -13.90627 -13.83461 -13.75997 -13.67546 -13.39249 -13.20990 -12.94474 -12.81559 -12.23246 -12.13212 -11.85568 -11.79866 -11.73295 -11.38996 -11.33553 -11.18939 -10.95630 -10.89705 -10.74510 -10.71946 -10.32291 -10.16960 -9.94176 -9.77768 -9.50442 -9.45462 -9.21643 -8.90226 -8.60265 -8.51586 -8.27083 -6.68312 -5.75978 -3.14833 1.29259 1.42413 2.97700 3.40296 3.46277 3.46509 3.48716 3.88477 4.53580 4.55711 4.67633 4.74196 4.91683 4.97640 5.13474 5.15915 5.23832 5.33126 5.37003 5.39072 5.44646 5.48356 5.55494 5.65876 5.66007 5.72550 5.76154 5.80175 5.90971 6.04099 6.06219 6.16235 6.31097 6.35280 6.38949 6.51027 6.57398 6.59353 6.60299 6.71280 6.88861 6.92928 6.96660 6.99744 7.12777 7.16810 7.34066 7.63584 7.76911 7.91310 8.00735 8.46118 8.61704 9.22327 9.90335 10.44212 11.31056 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002414 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.629492 B =11597.326951 C =12134.098152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.064 4.064 7 C -0.105 4.105 8 C 0.509 3.491 9 O -0.531 6.531 10 N -0.722 5.722 11 C 0.147 3.853 12 H 0.082 0.918 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.154 3.846 16 N -0.588 5.588 17 C -0.246 4.246 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.169 3.831 26 C -0.131 4.131 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.393 0.607 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.252 0.748 46 H 0.009 0.991 47 H 0.090 0.910 48 H 0.028 0.972 49 H 0.101 0.899 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -7.446 -7.412 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.064 4.064 7 C -0.145 4.145 8 C 0.295 3.705 9 O -0.407 6.407 10 N -0.373 5.373 11 C 0.044 3.956 12 H 0.099 0.901 13 C -0.150 4.150 14 C -0.181 4.181 15 C 0.025 3.975 16 N -0.309 5.309 17 C -0.376 4.376 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.212 1.212 25 C 0.045 3.955 26 C -0.171 4.171 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.108 0.892 48 H 0.047 0.953 49 H 0.119 0.881 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.432 -8.173 -7.221 21.417 hybrid contribution 0.474 1.006 0.607 1.267 sum -17.958 -7.167 -6.613 20.435 Atomic orbital electron populations 1.21745 0.94877 1.01513 1.02152 1.20530 0.96001 0.92889 1.02805 1.19844 0.99528 0.96046 0.93280 1.20943 1.00338 0.94766 0.97431 1.20977 0.98555 0.94909 0.97475 1.19272 0.98749 0.94860 0.93538 1.20709 0.93426 0.95438 1.04895 1.20383 0.89197 0.84220 0.76742 1.90729 1.70153 1.31134 1.48706 1.46301 1.08179 1.07807 1.74991 1.20466 0.76994 0.98761 0.99390 0.90050 1.21691 0.96466 0.96417 1.00415 1.22828 0.96677 1.01742 0.96886 1.20429 0.96353 0.94652 0.86063 1.44274 1.35436 1.51698 0.99525 1.19176 0.95804 1.26603 0.95990 0.91579 1.24888 0.96094 0.99658 0.99076 1.69955 1.19390 1.50984 1.14320 0.86402 0.82790 0.78303 0.79461 1.21144 1.21809 1.21226 1.20086 0.87804 0.89724 0.97848 1.21312 0.97484 1.05057 0.93201 1.20931 0.98951 0.94907 0.97320 1.20918 1.00545 0.94751 0.97379 0.92629 0.92555 0.92587 0.91148 0.91103 0.86295 0.86207 0.88196 0.88359 0.77382 0.94170 0.90128 0.93767 0.92691 0.94922 0.95304 0.93790 0.97312 0.89199 0.95340 0.88069 0.86367 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.09 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 5 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 6 C -0.06 -0.80 4.37 -104.62 -0.46 -1.26 16 7 C -0.10 -1.17 5.83 -29.04 -0.17 -1.34 16 8 C 0.51 7.98 7.68 -10.99 -0.08 7.90 16 9 O -0.53 -10.77 15.75 5.56 0.09 -10.68 16 10 N -0.72 -10.96 5.01 -55.45 -0.28 -11.24 16 11 C 0.15 2.76 2.17 -69.60 -0.15 2.61 16 12 H 0.08 1.71 5.84 -51.93 -0.30 1.40 16 13 C -0.11 -2.03 5.30 -27.19 -0.14 -2.18 16 14 C -0.14 -2.60 6.41 -24.76 -0.16 -2.76 16 15 C 0.15 3.30 5.17 -4.67 -0.02 3.27 16 16 N -0.59 -14.58 2.60 -175.09 -0.46 -15.03 16 17 C -0.25 -6.62 9.63 -15.06 -0.14 -6.77 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 19 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -24.75 9.40 55.49 0.52 -24.23 16 21 Si 0.90 21.52 29.60 -169.99 -5.03 16.49 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.17 4.14 5.24 -5.20 -0.03 4.12 16 26 C -0.13 -2.89 4.73 -30.19 -0.14 -3.04 16 27 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 28 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.39 4.71 8.45 -40.82 -0.34 4.36 16 39 H 0.04 0.61 7.81 -51.93 -0.41 0.21 16 40 H 0.08 1.71 6.83 -51.93 -0.35 1.36 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.69 7.99 -51.93 -0.42 0.27 16 44 H 0.03 0.60 6.90 -51.92 -0.36 0.24 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 47 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 48 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 49 H 0.10 2.49 5.27 -51.93 -0.27 2.21 16 50 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 51 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -31.02 397.66 -11.26 -42.28 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.64 Total: 5.59 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -3.46 Total: -9.18 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.21 Total: -50.50 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.02 -11.26 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052757493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.190 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds