Wall clock time and date at job start Tue Mar 31 2020 16:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47055 * 2 1 4 4 C 1.38235 * 119.99522 * 90.00448 * 3 2 1 5 5 C 1.38235 * 119.99999 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99895 * 359.97145 * 5 4 3 7 7 C 1.50698 * 119.99783 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47187 * 90.00389 * 7 6 5 9 9 O 1.21281 * 120.00170 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00361 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00496 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.21192 * 36.93693 * 11 10 8 13 13 C 1.50131 * 110.25034 * 159.01638 * 11 10 8 14 14 C 1.54841 * 110.81932 * 216.65761 * 13 11 10 15 15 C 1.54901 * 110.13817 * 321.13550 * 14 13 11 16 16 N 1.43427 * 116.08503 * 318.64043 * 15 14 13 17 17 C 1.36938 * 120.53433 * 271.84777 * 16 15 14 18 18 H 1.08005 * 120.00375 * 336.58662 * 17 16 15 19 19 C 1.38813 * 120.00189 * 156.59334 * 17 16 15 20 20 N 1.31620 * 120.00003 * 340.36999 * 19 17 16 21 21 Si 1.86800 * 120.00241 * 160.36188 * 19 17 16 22 22 H 1.48505 * 109.46863 * 60.00432 * 21 19 17 23 23 H 1.48503 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47471 * 300.00290 * 21 19 17 25 25 C 1.50168 * 118.92889 * 91.56816 * 16 15 14 26 26 C 1.46240 * 107.53123 * 289.59210 * 25 16 15 27 27 C 1.38234 * 119.99698 * 0.27852 * 6 5 4 28 28 C 1.38231 * 120.00106 * 359.53675 * 27 6 5 29 29 H 1.09006 * 109.47189 * 59.99577 * 1 2 3 30 30 H 1.09000 * 109.47536 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46892 * 299.99726 * 1 2 3 32 32 H 1.09000 * 109.46892 * 240.00274 * 2 1 3 33 33 H 1.08997 * 109.47096 * 120.00674 * 2 1 3 34 34 H 1.07997 * 120.00364 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00181 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47276 * 330.00108 * 7 6 5 37 37 H 1.08998 * 109.46623 * 210.00124 * 7 6 5 38 38 H 0.97002 * 119.99326 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.20847 * 337.01084 * 13 11 10 40 40 H 1.09006 * 109.20221 * 96.36004 * 13 11 10 41 41 H 1.08998 * 109.35608 * 81.33963 * 14 13 11 42 42 H 1.08995 * 109.35897 * 200.93148 * 14 13 11 43 43 H 1.09004 * 108.15391 * 196.92055 * 15 14 13 44 44 H 1.09007 * 108.16022 * 80.36184 * 15 14 13 45 45 H 0.96996 * 120.00343 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.84820 * 49.09749 * 25 16 15 47 47 H 1.08994 * 109.84643 * 170.02133 * 25 16 15 48 48 H 1.08993 * 108.52490 * 179.65163 * 26 25 16 49 49 H 1.09000 * 108.52137 * 297.16714 * 26 25 16 50 50 H 1.07999 * 119.99846 * 179.72302 * 27 6 5 51 51 H 1.08004 * 120.00356 * 180.22695 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9554 4.0269 0.0002 7 6 3.4588 5.4473 0.0003 8 6 4.9657 5.4462 0.0009 9 8 5.5714 4.3954 0.0016 10 7 5.6406 6.6128 0.0006 11 6 7.1055 6.6118 0.0017 12 1 7.4820 5.7935 -0.6122 13 6 7.6265 7.9261 -0.5032 14 6 8.9067 7.7220 -1.3499 15 6 9.7940 6.6206 -0.7181 16 7 9.9080 6.6455 0.7114 17 6 10.8800 7.3947 1.3188 18 1 11.7755 7.6598 0.7764 19 6 10.7146 7.8133 2.6319 20 7 9.5125 7.8408 3.1674 21 14 12.1979 8.3375 3.6391 22 1 12.8641 9.4879 2.9772 23 1 11.7563 8.7378 4.9993 24 1 13.1523 7.2046 3.7414 25 6 8.9402 5.8417 1.5314 26 6 7.6323 6.4876 1.4276 27 6 2.7200 3.3770 -1.1970 28 6 2.2624 2.0727 -1.1971 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9037 3.8847 2.1326 36 1 3.0955 5.9614 0.8901 37 1 3.0962 5.9613 -0.8898 38 1 5.1562 7.4532 0.0004 39 1 6.8624 8.4027 -1.1174 40 1 7.8574 8.5701 0.3454 41 1 8.6277 7.4256 -2.3610 42 1 9.4657 8.6569 -1.3908 43 1 10.7951 6.7072 -1.1404 44 1 9.3909 5.6507 -1.0100 45 1 9.3968 8.1336 4.0849 46 1 8.8824 4.8246 1.1438 47 1 9.2633 5.8231 2.5721 48 1 6.9148 5.9127 2.0130 49 1 7.7042 7.4862 1.8584 50 1 2.8965 3.8874 -2.1322 51 1 2.0820 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052757493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:44 Heat of formation + Delta-G solvation = -16.024191 kcal Electronic energy + Delta-G solvation = -28476.954909 eV Core-core repulsion = 24761.521371 eV Total energy + Delta-G solvation = -3715.433538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22622 -40.21740 -39.09595 -36.19682 -35.45637 -34.19642 -32.85203 -32.45489 -31.78365 -31.69061 -28.45774 -27.60686 -25.51722 -24.92733 -24.05534 -23.62028 -22.00056 -21.60291 -21.16783 -20.64148 -18.59051 -17.91507 -17.47687 -16.83773 -16.81220 -16.69734 -16.00715 -15.77742 -15.65753 -15.44413 -15.27919 -14.89375 -14.63182 -14.53832 -14.37079 -14.16289 -13.74551 -13.69122 -13.53167 -13.23939 -13.07311 -12.93096 -12.87148 -12.60906 -12.56786 -12.50872 -12.08022 -12.04443 -11.86401 -11.70923 -11.69150 -11.65181 -11.63699 -11.20252 -11.02751 -10.80206 -10.50173 -9.86471 -9.76840 -9.38424 -8.67457 -7.81704 -5.22839 0.42468 0.55496 1.48013 1.51313 1.56778 1.76055 2.32182 2.54746 2.93719 3.31251 3.58069 3.72390 3.90914 3.95754 4.03499 4.07703 4.16872 4.20559 4.23168 4.28090 4.49525 4.52049 4.54323 4.60379 4.63226 4.64899 4.68310 4.75654 4.79545 4.86603 4.94245 5.06736 5.09453 5.10448 5.18643 5.22518 5.23476 5.25194 5.33554 5.38208 5.39614 5.53778 5.54262 5.63741 5.69673 5.71351 5.75694 5.77504 6.07557 6.16623 6.42043 6.71816 7.16743 7.41639 7.89813 8.42787 9.22740 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002414 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.629492 B =11597.326951 C =12134.098152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.083 4.083 7 C -0.093 4.093 8 C 0.508 3.492 9 O -0.582 6.582 10 N -0.712 5.712 11 C 0.163 3.837 12 H 0.064 0.936 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.147 3.853 16 N -0.600 5.600 17 C -0.260 4.260 18 H 0.064 0.936 19 C -0.044 4.044 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.174 3.826 26 C -0.115 4.115 27 C -0.115 4.115 28 C -0.128 4.128 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.412 0.588 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.247 0.753 46 H 0.004 0.996 47 H 0.058 0.942 48 H 0.016 0.984 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -7.047 -8.948 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.139 4.139 6 C -0.084 4.084 7 C -0.132 4.132 8 C 0.295 3.705 9 O -0.461 6.461 10 N -0.364 5.364 11 C 0.058 3.942 12 H 0.082 0.918 13 C -0.141 4.141 14 C -0.173 4.173 15 C 0.019 3.981 16 N -0.322 5.322 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.240 4.240 20 N -0.563 5.563 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.214 1.214 25 C 0.050 3.950 26 C -0.154 4.154 27 C -0.133 4.133 28 C -0.146 4.146 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.076 0.924 48 H 0.034 0.966 49 H 0.097 0.903 50 H 0.150 0.850 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.941 -7.741 -8.785 23.124 hybrid contribution 0.945 0.787 1.070 1.630 sum -18.996 -6.954 -7.715 21.650 Atomic orbital electron populations 1.21714 0.93771 1.02415 1.01989 1.20584 0.96897 0.91402 1.03318 1.20185 0.98854 0.97194 0.93049 1.21204 1.00445 0.94777 0.98431 1.21201 0.99206 0.95607 0.97850 1.19497 0.99390 0.95727 0.93775 1.20719 0.89449 0.95489 1.07574 1.21193 0.91034 0.83216 0.75011 1.90711 1.71580 1.32917 1.50890 1.46116 1.06649 1.09006 1.74615 1.20021 0.79224 0.98518 0.96415 0.91820 1.21535 0.97380 0.95443 0.99729 1.22720 0.96115 1.00258 0.98248 1.20571 0.97205 0.96012 0.84290 1.44322 1.35400 1.51633 1.00867 1.19376 0.96378 1.26629 0.96582 0.91787 1.25537 0.98233 1.00276 0.99907 1.70104 1.20619 1.51559 1.13988 0.85474 0.79992 0.77876 0.77822 1.20396 1.22149 1.21362 1.19901 0.89169 0.89837 0.96086 1.21081 0.96033 1.02856 0.95465 1.21215 0.98902 0.95434 0.97751 1.21235 1.00237 0.94800 0.98323 0.92630 0.91122 0.92913 0.90437 0.90806 0.85091 0.86023 0.85971 0.84992 0.75098 0.90287 0.93339 0.90524 0.93030 0.94914 0.95068 0.94365 0.97819 0.92376 0.96561 0.90327 0.85031 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.93 5.13 -19.87 -0.10 -2.03 16 4 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 5 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 6 C -0.08 -1.99 4.37 -19.87 -0.09 -2.08 16 7 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 8 C 0.51 15.22 7.68 87.65 0.67 15.90 16 9 O -0.58 -23.57 15.75 -3.03 -0.05 -23.61 16 10 N -0.71 -20.32 5.01 -447.73 -2.24 -22.56 16 11 C 0.16 6.00 2.17 43.91 0.10 6.10 16 12 H 0.06 2.63 5.84 -2.39 -0.01 2.62 16 13 C -0.10 -3.56 5.30 30.30 0.16 -3.40 16 14 C -0.13 -4.67 6.41 31.87 0.20 -4.46 16 15 C 0.15 6.23 5.17 87.60 0.45 6.68 16 16 N -0.60 -30.27 2.60 -707.85 -1.84 -32.11 16 17 C -0.26 -14.16 9.63 84.03 0.81 -13.36 16 18 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 19 C -0.04 -2.39 4.91 84.86 0.42 -1.97 16 20 N -0.92 -51.62 9.40 21.65 0.20 -51.41 16 21 Si 0.96 44.80 29.60 68.60 2.03 46.83 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 C 0.17 8.84 5.24 83.58 0.44 9.28 16 26 C -0.11 -5.19 4.73 28.35 0.13 -5.05 16 27 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 28 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 33 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.12 1.91 8.09 -2.39 -0.02 1.89 16 37 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.41 8.66 8.45 -92.71 -0.78 7.88 16 39 H 0.08 2.13 7.81 -2.39 -0.02 2.11 16 40 H 0.05 2.03 6.83 -2.38 -0.02 2.01 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.03 1.37 7.99 -2.38 -0.02 1.35 16 44 H 0.03 1.29 6.90 -2.38 -0.02 1.27 16 45 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 46 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 47 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 48 H 0.02 0.74 7.90 -2.39 -0.02 0.72 16 49 H 0.08 3.96 5.27 -2.39 -0.01 3.95 16 50 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -69.13 397.66 3.35 -65.78 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.13 Total: 25.60 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.12 Total: -8.51 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.88 Total: -106.09 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.13 3.35 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052757493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.753 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds