Wall clock time and date at job start Tue Mar 31 2020 16:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47618 * 2 1 4 4 C 1.38233 * 120.00285 * 89.99568 * 3 2 1 5 5 C 1.38238 * 120.00142 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99716 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99650 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47082 * 89.99955 * 7 6 5 9 9 O 1.21289 * 120.00000 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00179 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00104 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.51263 * 324.95089 * 11 10 8 13 13 C 1.52421 * 109.30018 * 204.85978 * 11 10 8 14 14 C 1.47090 * 114.22265 * 154.95261 * 13 11 10 15 15 C 1.54864 * 110.32059 * 62.78805 * 14 13 11 16 16 N 1.44574 * 109.60560 * 288.73472 * 15 14 13 17 17 C 1.36937 * 118.64836 * 270.75134 * 16 15 14 18 18 H 1.08004 * 120.00060 * 26.48684 * 17 16 15 19 19 C 1.38814 * 120.00253 * 206.49692 * 17 16 15 20 20 N 1.31621 * 119.99944 * 15.67002 * 19 17 16 21 21 Si 1.86797 * 119.99901 * 195.67665 * 19 17 16 22 22 H 1.48499 * 109.47280 * 89.99582 * 21 19 17 23 23 H 1.48506 * 109.46970 * 209.99488 * 21 19 17 24 24 H 1.48494 * 109.47128 * 329.99311 * 21 19 17 25 25 C 1.47611 * 122.71052 * 90.72711 * 16 15 14 26 26 C 1.50887 * 109.48629 * 84.99945 * 11 10 8 27 27 C 1.38228 * 120.00103 * 0.24642 * 6 5 4 28 28 C 1.38234 * 119.99844 * 270.02231 * 3 2 1 29 29 H 1.09003 * 109.46935 * 59.99967 * 1 2 3 30 30 H 1.08990 * 109.47637 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46855 * 300.00640 * 1 2 3 32 32 H 1.08995 * 109.47429 * 239.99700 * 2 1 3 33 33 H 1.09003 * 109.46935 * 120.00033 * 2 1 3 34 34 H 1.07999 * 119.99760 * 0.02562 * 4 3 2 35 35 H 1.08002 * 119.99733 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47066 * 329.99712 * 7 6 5 37 37 H 1.08998 * 109.46791 * 209.99935 * 7 6 5 38 38 H 0.96998 * 119.99877 * 359.97438 * 10 8 7 39 39 H 1.09001 * 108.57779 * 33.71931 * 13 11 10 40 40 H 1.09003 * 108.56422 * 276.16997 * 13 11 10 41 41 H 1.09003 * 109.32624 * 302.53125 * 14 13 11 42 42 H 1.09002 * 109.33493 * 183.04877 * 14 13 11 43 43 H 1.09005 * 109.44873 * 168.69465 * 15 14 13 44 44 H 1.08994 * 109.42553 * 48.76762 * 15 14 13 45 45 H 0.96993 * 119.99979 * 180.02562 * 20 19 17 46 46 H 1.09000 * 108.94763 * 197.18259 * 25 16 15 47 47 H 1.08994 * 108.94896 * 78.55362 * 25 16 15 48 48 H 1.09004 * 109.36204 * 91.65886 * 26 11 10 49 49 H 1.08996 * 109.36391 * 331.92166 * 26 11 10 50 50 H 1.07996 * 120.00059 * 179.72847 * 27 6 5 51 51 H 1.08005 * 120.00072 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7232 3.3759 1.1971 6 6 2.9527 4.0278 -0.0002 7 6 3.4540 5.4490 -0.0002 8 6 4.9610 5.4500 -0.0007 9 8 5.5682 4.4000 -0.0006 10 7 5.6342 6.6176 -0.0014 11 6 7.0992 6.6186 -0.0013 12 1 7.4638 5.7781 0.5892 13 6 7.6020 7.9246 0.6027 14 6 8.9485 7.8394 1.1887 15 6 9.9899 7.4946 0.0956 16 7 9.8199 6.1205 -0.3203 17 6 10.5049 5.1422 0.3498 18 1 10.7972 5.2954 1.3782 19 6 10.8237 3.9538 -0.2927 20 7 10.7530 3.8754 -1.6047 21 14 11.3530 2.4657 0.7046 22 1 10.1582 1.6611 1.0654 23 1 12.2840 1.6354 -0.1011 24 1 12.0377 2.9175 1.9424 25 6 8.9379 5.7284 -1.4371 26 6 7.6026 6.4942 -1.4182 27 6 2.7170 3.3780 -1.1972 28 6 2.2624 2.0725 -1.1972 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5632 2.1324 35 1 2.9028 3.8852 2.1324 36 1 3.0906 5.9625 0.8900 37 1 3.0900 5.9626 -0.8900 38 1 5.1486 7.4573 -0.0019 39 1 6.9055 8.2385 1.3802 40 1 7.6114 8.6865 -0.1767 41 1 8.9600 7.0644 1.9552 42 1 9.2056 8.7963 1.6429 43 1 10.9947 7.6311 0.4956 44 1 9.8479 8.1534 -0.7610 45 1 10.9755 3.0449 -2.0536 46 1 8.7341 4.6598 -1.3687 47 1 9.4483 5.9301 -2.3788 48 1 7.7506 7.4893 -1.8379 49 1 6.8683 5.9551 -2.0167 50 1 2.8921 3.8888 -2.1325 51 1 2.0824 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052757495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:48 Heat of formation + Delta-G solvation = -6.808783 kcal Electronic energy + Delta-G solvation = -28638.744053 eV Core-core repulsion = 24923.710125 eV Total energy + Delta-G solvation = -3715.033928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.03964 -39.09943 -37.54305 -34.80698 -34.44783 -32.81701 -31.58049 -30.89748 -30.77926 -30.21121 -27.34563 -25.83134 -24.05708 -23.32723 -23.01651 -22.73260 -20.83265 -20.20619 -19.80286 -19.16077 -16.76483 -16.60399 -16.31500 -15.89425 -15.69383 -15.16068 -14.92332 -14.52538 -14.22629 -13.86787 -13.85144 -13.72602 -13.45214 -13.31767 -13.13957 -12.90468 -12.83094 -12.40003 -12.16936 -12.08831 -11.86591 -11.75640 -11.46797 -11.29097 -11.03267 -10.91715 -10.85655 -10.79739 -10.72028 -10.34094 -10.15716 -10.01604 -9.88554 -9.64673 -9.52369 -9.43946 -8.85744 -8.62892 -8.48107 -8.26724 -6.57282 -5.67461 -3.11346 1.33183 1.46821 2.98872 3.43965 3.47556 3.53910 3.55356 3.89214 4.58769 4.60682 4.71723 4.76552 4.94541 5.01474 5.12428 5.18352 5.24371 5.25305 5.34943 5.37454 5.38657 5.51236 5.54352 5.59164 5.62290 5.70623 5.79663 5.80126 5.94777 6.05809 6.08313 6.10296 6.16417 6.25304 6.36544 6.42826 6.49287 6.53826 6.61419 6.62709 6.65830 6.75772 6.83268 6.89958 7.03777 7.06861 7.13713 7.53523 7.81509 7.87174 7.94003 8.58090 8.62304 9.34527 10.01695 10.45886 11.40036 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.003229 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.259851 B = 8668.418847 C =10246.383051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.103 4.103 8 C 0.505 3.495 9 O -0.517 6.517 10 N -0.731 5.731 11 C 0.155 3.845 12 H 0.102 0.898 13 C -0.106 4.106 14 C -0.146 4.146 15 C 0.157 3.843 16 N -0.591 5.591 17 C -0.259 4.259 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.182 3.818 26 C -0.146 4.146 27 C -0.101 4.101 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.390 0.610 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.252 0.748 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.044 0.956 49 H 0.054 0.946 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.086 3.330 2.651 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.290 3.710 9 O -0.391 6.391 10 N -0.383 5.383 11 C 0.051 3.949 12 H 0.120 0.880 13 C -0.144 4.144 14 C -0.187 4.187 15 C 0.028 3.972 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.057 3.943 26 C -0.186 4.186 27 C -0.119 4.119 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.577 2.415 2.514 20.870 hybrid contribution 0.063 -0.304 0.430 0.531 sum -20.514 2.111 2.944 20.831 Atomic orbital electron populations 1.21739 0.94887 1.01498 1.02099 1.20535 0.95964 0.92901 1.02889 1.19847 0.99436 0.96029 0.93283 1.20928 1.00438 0.94757 0.97412 1.20934 0.98803 0.94937 0.97331 1.19253 0.98926 0.94859 0.93562 1.20697 0.93356 0.95484 1.04731 1.20438 0.89250 0.84275 0.77040 1.90819 1.69850 1.31017 1.47442 1.46354 1.08231 1.07771 1.75924 1.20489 0.76744 0.99638 0.97988 0.88045 1.20541 0.97947 0.96373 0.99525 1.21455 0.96085 1.00257 1.00881 1.20688 0.95595 0.86874 0.93996 1.43668 1.48993 1.00881 1.37671 1.19169 1.30367 0.95448 0.93867 0.91799 1.25005 0.99494 0.99505 0.95145 1.70053 1.52351 1.25799 1.06500 0.86350 0.78003 0.83406 0.79372 1.21348 1.21839 1.20516 1.20941 0.85200 0.98552 0.89622 1.22433 1.00522 1.00303 0.95326 1.20946 0.98700 0.94921 0.97365 1.20939 1.00372 0.94718 0.97431 0.92618 0.92559 0.92645 0.91070 0.91107 0.86341 0.86358 0.88395 0.88344 0.77710 0.93485 0.92886 0.91985 0.93095 0.93609 0.95024 0.93762 0.90385 0.95747 0.93698 0.92709 0.86289 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.09 -0.80 6.06 -27.89 -0.17 -0.96 16 3 C -0.09 -1.01 5.13 -104.63 -0.54 -1.55 16 4 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 5 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 6 C -0.07 -0.86 4.37 -104.62 -0.46 -1.31 16 7 C -0.10 -1.14 5.83 -29.03 -0.17 -1.31 16 8 C 0.51 8.01 7.64 -10.99 -0.08 7.93 16 9 O -0.52 -11.21 15.70 5.55 0.09 -11.13 16 10 N -0.73 -10.48 4.93 -55.13 -0.27 -10.75 16 11 C 0.15 2.79 2.05 -69.29 -0.14 2.65 16 12 H 0.10 2.35 6.91 -51.93 -0.36 1.99 16 13 C -0.11 -1.64 4.68 -29.86 -0.14 -1.78 16 14 C -0.15 -2.54 5.74 -28.58 -0.16 -2.70 16 15 C 0.16 3.26 5.65 -4.09 -0.02 3.23 16 16 N -0.59 -14.90 2.27 -172.09 -0.39 -15.29 16 17 C -0.26 -7.27 9.44 -15.06 -0.14 -7.41 16 18 H 0.06 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.01 0.21 4.87 -17.43 -0.08 0.12 16 20 N -0.90 -27.19 11.01 55.49 0.61 -26.58 16 21 Si 0.90 22.94 29.58 -169.99 -5.03 17.91 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.18 4.56 4.67 -2.94 -0.01 4.54 16 26 C -0.15 -2.88 5.39 -27.30 -0.15 -3.03 16 27 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 28 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.39 4.05 8.59 -40.82 -0.35 3.70 16 39 H 0.05 0.63 8.03 -51.93 -0.42 0.21 16 40 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 44 H 0.03 0.62 8.06 -51.93 -0.42 0.20 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 2.27 6.33 -51.93 -0.33 1.94 16 47 H 0.02 0.66 8.03 -51.93 -0.42 0.24 16 48 H 0.04 0.81 7.32 -51.93 -0.38 0.43 16 49 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 51 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -33.97 402.99 -11.27 -45.24 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.91 Total: 3.84 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.44 Total: -9.31 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.05 Total: -52.62 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.97 -11.27 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052757495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.427 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds