Wall clock time and date at job start Tue Mar 31 2020 16:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47618 * 2 1 4 4 C 1.38233 * 120.00285 * 89.99568 * 3 2 1 5 5 C 1.38238 * 120.00142 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99716 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99650 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47082 * 89.99955 * 7 6 5 9 9 O 1.21289 * 120.00000 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00179 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00104 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.51263 * 324.95089 * 11 10 8 13 13 C 1.52421 * 109.30018 * 204.85978 * 11 10 8 14 14 C 1.47090 * 114.22265 * 154.95261 * 13 11 10 15 15 C 1.54864 * 110.32059 * 62.78805 * 14 13 11 16 16 N 1.44574 * 109.60560 * 288.73472 * 15 14 13 17 17 C 1.36937 * 118.64836 * 270.75134 * 16 15 14 18 18 H 1.08004 * 120.00060 * 26.48684 * 17 16 15 19 19 C 1.38814 * 120.00253 * 206.49692 * 17 16 15 20 20 N 1.31621 * 119.99944 * 15.67002 * 19 17 16 21 21 Si 1.86797 * 119.99901 * 195.67665 * 19 17 16 22 22 H 1.48499 * 109.47280 * 89.99582 * 21 19 17 23 23 H 1.48506 * 109.46970 * 209.99488 * 21 19 17 24 24 H 1.48494 * 109.47128 * 329.99311 * 21 19 17 25 25 C 1.47611 * 122.71052 * 90.72711 * 16 15 14 26 26 C 1.50887 * 109.48629 * 84.99945 * 11 10 8 27 27 C 1.38228 * 120.00103 * 0.24642 * 6 5 4 28 28 C 1.38234 * 119.99844 * 270.02231 * 3 2 1 29 29 H 1.09003 * 109.46935 * 59.99967 * 1 2 3 30 30 H 1.08990 * 109.47637 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46855 * 300.00640 * 1 2 3 32 32 H 1.08995 * 109.47429 * 239.99700 * 2 1 3 33 33 H 1.09003 * 109.46935 * 120.00033 * 2 1 3 34 34 H 1.07999 * 119.99760 * 0.02562 * 4 3 2 35 35 H 1.08002 * 119.99733 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47066 * 329.99712 * 7 6 5 37 37 H 1.08998 * 109.46791 * 209.99935 * 7 6 5 38 38 H 0.96998 * 119.99877 * 359.97438 * 10 8 7 39 39 H 1.09001 * 108.57779 * 33.71931 * 13 11 10 40 40 H 1.09003 * 108.56422 * 276.16997 * 13 11 10 41 41 H 1.09003 * 109.32624 * 302.53125 * 14 13 11 42 42 H 1.09002 * 109.33493 * 183.04877 * 14 13 11 43 43 H 1.09005 * 109.44873 * 168.69465 * 15 14 13 44 44 H 1.08994 * 109.42553 * 48.76762 * 15 14 13 45 45 H 0.96993 * 119.99979 * 180.02562 * 20 19 17 46 46 H 1.09000 * 108.94763 * 197.18259 * 25 16 15 47 47 H 1.08994 * 108.94896 * 78.55362 * 25 16 15 48 48 H 1.09004 * 109.36204 * 91.65886 * 26 11 10 49 49 H 1.08996 * 109.36391 * 331.92166 * 26 11 10 50 50 H 1.07996 * 120.00059 * 179.72847 * 27 6 5 51 51 H 1.08005 * 120.00072 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7232 3.3759 1.1971 6 6 2.9527 4.0278 -0.0002 7 6 3.4540 5.4490 -0.0002 8 6 4.9610 5.4500 -0.0007 9 8 5.5682 4.4000 -0.0006 10 7 5.6342 6.6176 -0.0014 11 6 7.0992 6.6186 -0.0013 12 1 7.4638 5.7781 0.5892 13 6 7.6020 7.9246 0.6027 14 6 8.9485 7.8394 1.1887 15 6 9.9899 7.4946 0.0956 16 7 9.8199 6.1205 -0.3203 17 6 10.5049 5.1422 0.3498 18 1 10.7972 5.2954 1.3782 19 6 10.8237 3.9538 -0.2927 20 7 10.7530 3.8754 -1.6047 21 14 11.3530 2.4657 0.7046 22 1 10.1582 1.6611 1.0654 23 1 12.2840 1.6354 -0.1011 24 1 12.0377 2.9175 1.9424 25 6 8.9379 5.7284 -1.4371 26 6 7.6026 6.4942 -1.4182 27 6 2.7170 3.3780 -1.1972 28 6 2.2624 2.0725 -1.1972 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5632 2.1324 35 1 2.9028 3.8852 2.1324 36 1 3.0906 5.9625 0.8900 37 1 3.0900 5.9626 -0.8900 38 1 5.1486 7.4573 -0.0019 39 1 6.9055 8.2385 1.3802 40 1 7.6114 8.6865 -0.1767 41 1 8.9600 7.0644 1.9552 42 1 9.2056 8.7963 1.6429 43 1 10.9947 7.6311 0.4956 44 1 9.8479 8.1534 -0.7610 45 1 10.9755 3.0449 -2.0536 46 1 8.7341 4.6598 -1.3687 47 1 9.4483 5.9301 -2.3788 48 1 7.7506 7.4893 -1.8379 49 1 6.8683 5.9551 -2.0167 50 1 2.8921 3.8888 -2.1325 51 1 2.0824 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052757495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:47 Heat of formation + Delta-G solvation = -26.413004 kcal Electronic energy + Delta-G solvation = -28639.594156 eV Core-core repulsion = 24923.710125 eV Total energy + Delta-G solvation = -3715.884031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22341 -40.20704 -39.07377 -36.31426 -35.48958 -34.47080 -32.82358 -32.54269 -31.80884 -31.61632 -28.44309 -27.53244 -25.56059 -25.10926 -24.04887 -23.65129 -21.88278 -21.60370 -21.07133 -20.87131 -18.56752 -17.94230 -17.56505 -17.05137 -16.76692 -16.65015 -16.15363 -15.99372 -15.68847 -15.51848 -14.97486 -14.85005 -14.61652 -14.56283 -14.33408 -14.20102 -14.01981 -13.73999 -13.61325 -13.35484 -13.03079 -12.93991 -12.83114 -12.80063 -12.54889 -12.48822 -12.10914 -12.06917 -12.02234 -11.75198 -11.71220 -11.66881 -11.50171 -11.38417 -11.34764 -10.79903 -10.45261 -9.98738 -9.79339 -9.40489 -8.65386 -7.86926 -5.32037 0.40179 0.52891 1.37993 1.43891 1.48851 1.77266 2.29965 2.48669 2.91468 3.27562 3.68363 3.70399 3.84095 3.88297 3.93665 4.10413 4.12858 4.16238 4.20525 4.41535 4.46081 4.48541 4.49289 4.50320 4.58086 4.61135 4.71201 4.73145 4.77376 4.86327 4.95435 5.02488 5.03770 5.06719 5.16078 5.19439 5.22497 5.24336 5.26712 5.36562 5.38597 5.51302 5.53823 5.59292 5.66247 5.68237 5.72835 5.74124 5.77932 6.14378 6.40206 6.73300 7.17744 7.46868 7.96215 8.33883 9.17860 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.003229 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.259851 B = 8668.418847 C =10246.383051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.089 4.089 8 C 0.501 3.499 9 O -0.585 6.585 10 N -0.713 5.713 11 C 0.164 3.836 12 H 0.045 0.955 13 C -0.103 4.103 14 C -0.133 4.133 15 C 0.147 3.853 16 N -0.604 5.604 17 C -0.258 4.258 18 H 0.065 0.935 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.955 3.045 22 H -0.299 1.299 23 H -0.291 1.291 24 H -0.262 1.262 25 C 0.195 3.805 26 C -0.130 4.130 27 C -0.119 4.119 28 C -0.132 4.132 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.416 0.584 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.246 0.754 46 H 0.025 0.975 47 H -0.005 1.005 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.127 0.873 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.132 5.773 3.852 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.136 4.136 6 C -0.085 4.085 7 C -0.129 4.129 8 C 0.289 3.711 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.059 3.941 12 H 0.063 0.937 13 C -0.141 4.141 14 C -0.173 4.173 15 C 0.021 3.979 16 N -0.326 5.326 17 C -0.389 4.389 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.784 3.216 22 H -0.227 1.227 23 H -0.217 1.217 24 H -0.186 1.186 25 C 0.069 3.931 26 C -0.170 4.170 27 C -0.137 4.137 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.254 0.746 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.013 0.987 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.145 0.855 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.651 4.950 3.743 23.486 hybrid contribution 0.706 -1.040 0.062 1.259 sum -21.945 3.910 3.805 22.612 Atomic orbital electron populations 1.21699 0.93485 1.02447 1.02071 1.20588 0.97137 0.91424 1.03167 1.20189 0.98955 0.97181 0.93123 1.21232 1.00427 0.94936 0.98306 1.21226 0.98958 0.95472 0.97916 1.19542 0.99233 0.96094 0.93625 1.20720 0.89159 0.95150 1.07847 1.21324 0.91198 0.83401 0.75174 1.90806 1.71585 1.33498 1.50507 1.46074 1.06691 1.08858 1.74925 1.20091 0.78963 0.99336 0.95734 0.93693 1.20491 0.97330 0.95045 1.01195 1.21295 0.95994 1.01208 0.98822 1.20962 0.96647 0.84595 0.95705 1.43840 1.49000 1.02401 1.37367 1.19474 1.29115 0.96311 0.94000 0.91761 1.25720 1.00821 1.02074 0.96039 1.70207 1.54239 1.25812 1.07840 0.85436 0.77111 0.80293 0.78737 1.22654 1.21728 1.18645 1.20583 0.87622 0.96446 0.88423 1.22221 0.97101 1.00641 0.97026 1.21221 0.99033 0.95493 0.97945 1.21229 1.00505 0.94906 0.98343 0.92696 0.91109 0.92613 0.90871 0.90753 0.84818 0.85264 0.84990 0.85198 0.74622 0.90079 0.90141 0.94650 0.89184 0.94377 0.93302 0.94531 0.95623 0.98701 0.90688 0.93483 0.85499 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.09 -1.54 6.06 29.85 0.18 -1.36 16 3 C -0.09 -2.21 5.13 -19.87 -0.10 -2.31 16 4 C -0.13 -3.14 9.70 22.27 0.22 -2.92 16 5 C -0.12 -2.94 9.70 22.27 0.22 -2.73 16 6 C -0.08 -2.13 4.37 -19.87 -0.09 -2.22 16 7 C -0.09 -1.76 5.83 29.10 0.17 -1.59 16 8 C 0.50 15.37 7.64 87.66 0.67 16.04 16 9 O -0.58 -26.22 15.70 -3.06 -0.05 -26.27 16 10 N -0.71 -18.62 4.93 -446.73 -2.20 -20.82 16 11 C 0.16 5.71 2.05 44.11 0.09 5.80 16 12 H 0.04 2.13 6.91 -2.39 -0.02 2.11 16 13 C -0.10 -2.78 4.68 28.56 0.13 -2.64 16 14 C -0.13 -4.23 5.74 29.39 0.17 -4.06 16 15 C 0.15 5.94 5.65 87.38 0.49 6.43 16 16 N -0.60 -31.14 2.27 -698.37 -1.58 -32.72 16 17 C -0.26 -14.96 9.44 84.03 0.79 -14.17 16 18 H 0.06 3.64 7.88 -2.91 -0.02 3.62 16 19 C -0.05 -3.09 4.87 84.86 0.41 -2.68 16 20 N -0.93 -59.28 11.01 21.65 0.24 -59.04 16 21 Si 0.96 48.95 29.58 68.60 2.03 50.98 16 22 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 23 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 24 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 25 C 0.20 10.18 4.67 86.49 0.40 10.58 16 26 C -0.13 -5.09 5.39 30.23 0.16 -4.93 16 27 C -0.12 -3.04 9.70 22.27 0.22 -2.83 16 28 C -0.13 -3.22 9.70 22.27 0.22 -3.01 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 1.26 8.09 -2.39 -0.02 1.25 16 33 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 36 H 0.13 1.71 8.09 -2.39 -0.02 1.69 16 37 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 38 H 0.42 6.69 8.59 -92.71 -0.80 5.89 16 39 H 0.08 1.72 8.03 -2.39 -0.02 1.70 16 40 H 0.08 1.83 7.36 -2.39 -0.02 1.81 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.04 1.57 7.99 -2.38 -0.02 1.55 16 44 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.03 1.58 6.33 -2.39 -0.02 1.56 16 47 H -0.01 -0.29 8.03 -2.39 -0.02 -0.30 16 48 H 0.07 2.49 7.32 -2.39 -0.02 2.48 16 49 H 0.05 1.89 7.84 -2.39 -0.02 1.88 16 50 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 51 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -81.10 402.99 3.60 -77.49 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.10 Total: 20.25 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.07 Total: -9.87 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.54 Total: -112.59 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -81.10 3.60 -77.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052757495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.079 kcal (2) G-P(sol) polarization free energy of solvation -81.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds