Wall clock time and date at job start Tue Mar 31 2020 16:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47354 * 2 1 4 4 C 1.38256 * 120.00175 * 265.23819 * 3 2 1 5 5 C 1.38218 * 120.00165 * 180.27710 * 4 3 2 6 6 C 1.38263 * 119.99662 * 359.73512 * 5 4 3 7 7 C 1.38213 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.99875 * 84.99754 * 3 2 1 9 9 C 1.50701 * 120.00219 * 0.02562 * 8 3 2 10 10 C 1.50703 * 109.47180 * 84.72025 * 9 8 3 11 11 O 1.21286 * 119.99788 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99833 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99967 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.52609 * 325.08107 * 13 12 10 15 15 C 1.53040 * 109.49758 * 205.00027 * 13 12 10 16 16 C 1.53044 * 109.53661 * 178.68364 * 15 13 12 17 17 C 1.53194 * 109.31373 * 61.36456 * 16 15 13 18 18 H 1.09003 * 109.58378 * 65.15197 * 17 16 15 19 19 C 1.52998 * 109.58433 * 185.57617 * 17 16 15 20 20 N 1.46922 * 108.77397 * 305.36305 * 17 16 15 21 21 C 1.36936 * 120.63100 * 233.58742 * 20 17 16 22 22 H 1.07993 * 120.00038 * 29.03060 * 21 20 17 23 23 C 1.38812 * 119.99785 * 209.03584 * 21 20 17 24 24 N 1.31617 * 120.00378 * 15.01823 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 195.01873 * 23 21 20 26 26 H 1.48494 * 109.47225 * 90.00113 * 25 23 21 27 27 H 1.48501 * 109.46797 * 209.99979 * 25 23 21 28 28 H 1.48497 * 109.47032 * 329.99739 * 25 23 21 29 29 C 1.46931 * 118.73776 * 53.61311 * 20 17 16 30 30 H 1.09003 * 109.46806 * 299.99664 * 1 2 3 31 31 H 1.08994 * 109.47038 * 59.99790 * 1 2 3 32 32 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47166 * 240.00017 * 2 1 3 34 34 H 1.09001 * 109.47364 * 120.00466 * 2 1 3 35 35 H 1.08000 * 120.00434 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00248 * 179.72523 * 5 4 3 37 37 H 1.07995 * 119.99514 * 179.97438 * 6 5 4 38 38 H 1.07995 * 120.00249 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.46740 * 324.72220 * 9 8 3 40 40 H 1.09001 * 109.47189 * 204.72203 * 9 8 3 41 41 H 0.97007 * 120.00278 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.46273 * 58.66293 * 15 13 12 43 43 H 1.09003 * 109.45883 * 298.70088 * 15 13 12 44 44 H 1.09003 * 109.49323 * 181.31636 * 16 15 13 45 45 H 1.09000 * 109.49895 * 301.41088 * 16 15 13 46 46 H 1.09002 * 109.47321 * 60.00447 * 19 17 16 47 47 H 1.09005 * 109.46837 * 179.97438 * 19 17 16 48 48 H 1.09001 * 109.47185 * 299.99946 * 19 17 16 49 49 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58018 * 186.60383 * 29 20 17 51 51 H 1.08993 * 109.70630 * 66.24601 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3566 2.0393 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9597 4.0253 0.0006 7 6 2.6310 3.4085 1.1930 8 6 2.1643 2.1070 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9838 0.6322 2.9840 11 8 4.0124 0.6093 2.3418 12 7 2.8936 -0.0598 4.1369 13 6 4.0382 -0.8392 4.6149 14 1 4.5727 -1.2611 3.7637 15 6 3.5440 -1.9705 5.5193 16 6 4.7362 -2.8052 5.9928 17 6 5.6859 -1.9178 6.8036 18 1 5.1880 -1.5869 7.7150 19 6 6.9459 -2.7083 7.1620 20 7 6.0518 -0.7501 5.9904 21 6 7.3667 -0.4323 5.7779 22 1 8.1162 -1.2098 5.7728 23 6 7.7362 0.8894 5.5690 24 7 6.8985 1.8612 5.8623 25 14 9.4226 1.2885 4.8714 26 1 9.3467 1.3354 3.3892 27 1 9.8716 2.6071 5.3860 28 1 10.3899 0.2404 5.2847 29 6 4.9800 0.0705 5.4101 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2502 1.5043 -2.1253 36 1 3.0802 3.8223 -2.1244 37 1 3.3244 5.0418 0.0010 38 1 2.7383 3.9432 2.1251 39 1 0.9551 0.7719 2.3366 40 1 1.5473 2.1906 3.2337 41 1 2.0710 -0.0412 4.6507 42 1 2.8544 -2.6053 4.9630 43 1 3.0312 -1.5472 6.3831 44 1 4.3813 -3.6246 6.6179 45 1 5.2641 -3.2086 5.1286 46 1 7.4441 -3.0319 6.2481 47 1 7.6204 -2.0751 7.7384 48 1 6.6710 -3.5810 7.7546 49 1 7.1567 2.7847 5.7160 50 1 5.4120 0.8191 4.7460 51 1 4.4240 0.5654 6.2062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071608264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:56 Heat of formation + Delta-G solvation = -8.210308 kcal Electronic energy + Delta-G solvation = -29273.833704 eV Core-core repulsion = 25558.739001 eV Total energy + Delta-G solvation = -3715.094703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.09553 -38.85820 -37.46769 -34.38044 -34.23598 -32.78727 -32.49707 -30.66288 -29.81372 -29.46580 -27.60959 -25.78757 -24.83537 -23.84179 -22.32310 -22.02955 -20.96632 -20.31463 -19.81686 -19.15150 -16.74054 -16.50454 -16.25724 -16.00097 -15.59433 -15.04837 -14.79838 -14.17545 -13.94559 -13.79517 -13.75949 -13.59720 -13.37295 -13.35086 -13.02542 -12.88475 -12.72480 -12.34334 -12.08136 -11.92750 -11.83229 -11.73953 -11.38548 -11.29109 -11.09599 -10.84946 -10.77338 -10.69482 -10.65064 -10.47575 -10.36585 -10.22784 -9.92596 -9.70552 -9.41962 -9.31534 -8.67280 -8.47369 -8.45559 -8.37167 -6.58035 -5.70280 -3.14853 1.43997 1.51810 3.11954 3.45148 3.51470 3.53142 3.56687 3.97448 4.57121 4.68364 4.77616 4.94214 5.00304 5.15396 5.20081 5.26264 5.32731 5.37921 5.40452 5.44501 5.52589 5.55329 5.58088 5.61302 5.68425 5.71937 5.82963 5.89987 6.00026 6.04117 6.13384 6.16631 6.23331 6.29417 6.34085 6.41387 6.48076 6.54615 6.57215 6.61167 6.65240 6.75109 6.78708 7.02119 7.06818 7.11674 7.15170 7.37230 7.79801 7.89386 8.01215 8.54036 8.75247 9.28630 9.92876 10.47774 11.37643 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003817 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.134282 B = 7333.874431 C = 8987.584165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.057 4.057 9 C -0.107 4.107 10 C 0.510 3.490 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.117 3.883 14 H 0.080 0.920 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.165 3.835 18 H 0.024 0.976 19 C -0.136 4.136 20 N -0.584 5.584 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.168 3.832 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.391 0.609 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.252 0.748 50 H 0.095 0.905 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 -2.394 -8.176 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.058 4.058 9 C -0.147 4.147 10 C 0.295 3.705 11 O -0.397 6.397 12 N -0.375 5.375 13 C 0.012 3.988 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.059 3.941 18 H 0.042 0.958 19 C -0.194 4.194 20 N -0.307 5.307 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.729 3.271 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.041 3.959 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.224 0.776 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.113 0.887 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -14.885 -2.243 -8.642 17.358 hybrid contribution 0.493 0.446 -0.066 0.668 sum -14.392 -1.797 -8.708 16.917 Atomic orbital electron populations 1.21770 0.94881 1.01610 1.02063 1.20552 0.95732 0.93057 1.03186 1.19626 0.98682 0.95550 0.92647 1.20929 1.00548 0.95206 0.97216 1.21065 1.00009 0.94914 0.97924 1.21057 1.00624 1.00011 0.92566 1.21020 0.98119 0.94610 0.98251 1.19124 0.99614 0.93907 0.93124 1.20771 0.97917 1.00085 0.95962 1.20321 0.89173 0.79924 0.81092 1.90774 1.30693 1.61880 1.56310 1.46088 1.17007 1.50632 1.23751 1.21948 0.86736 0.92465 0.97636 0.90198 1.21675 0.97971 0.96915 0.98828 1.22049 0.96476 0.97714 1.00367 1.20481 0.93305 0.88204 0.92143 0.95812 1.21802 0.98499 0.98263 1.00826 1.44033 1.02531 1.28712 1.55462 1.19155 0.84140 0.91130 1.43793 0.91202 1.25054 0.97535 0.95982 1.00628 1.69993 1.35844 0.98677 1.49984 0.86339 0.84068 0.77378 0.79295 1.21338 1.21818 1.20433 1.21079 0.87600 0.92250 0.94926 0.92524 0.92581 0.92431 0.91127 0.90892 0.86436 0.86428 0.86269 0.86091 0.88283 0.88283 0.77634 0.93184 0.92350 0.92750 0.92128 0.92792 0.92033 0.94361 0.93786 0.88689 0.96683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.72 37.16 0.36 -0.93 16 2 C -0.09 -1.01 5.38 -27.89 -0.15 -1.16 16 3 C -0.06 -0.87 5.13 -104.63 -0.54 -1.41 16 4 C -0.12 -1.52 9.68 -39.58 -0.38 -1.91 16 5 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 6 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 7 C -0.10 -1.45 9.68 -39.58 -0.38 -1.83 16 8 C -0.06 -0.81 4.37 -104.62 -0.46 -1.27 16 9 C -0.11 -1.37 5.16 -29.03 -0.15 -1.52 16 10 C 0.51 8.80 6.97 -10.99 -0.08 8.72 16 11 O -0.52 -11.76 15.70 5.55 0.09 -11.67 16 12 N -0.72 -11.58 5.08 -53.69 -0.27 -11.86 16 13 C 0.12 2.29 2.60 -67.81 -0.18 2.11 16 14 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.87 5.35 -26.69 -0.14 -2.01 16 16 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 17 C 0.17 3.41 3.50 -67.60 -0.24 3.18 16 18 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 19 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 20 N -0.58 -14.71 2.99 -164.78 -0.49 -15.20 16 21 C -0.25 -7.02 8.61 -15.06 -0.13 -7.15 16 22 H 0.07 1.89 6.20 -52.49 -0.33 1.57 16 23 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 24 N -0.90 -26.99 11.14 55.49 0.62 -26.37 16 25 Si 0.90 22.78 29.58 -169.99 -5.03 17.75 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.17 4.11 4.86 -3.71 -0.02 4.09 16 30 H 0.06 0.47 6.80 -51.93 -0.35 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.77 8.05 -51.92 -0.42 0.35 16 34 H 0.07 0.94 6.40 -51.93 -0.33 0.61 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.10 0.99 5.64 -51.93 -0.29 0.70 16 40 H 0.10 1.07 8.05 -51.93 -0.42 0.66 16 41 H 0.39 4.78 8.61 -40.82 -0.35 4.43 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.05 7.40 -51.93 -0.38 0.66 16 47 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.09 2.76 6.06 -51.93 -0.31 2.44 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -33.85 397.47 -10.92 -44.77 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.61 Total: 6.06 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.21 Total: -9.48 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.15 Total: -53.43 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.85 -10.92 -44.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.563 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds