Wall clock time and date at job start Tue Mar 31 2020 16:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47354 * 2 1 4 4 C 1.38256 * 120.00175 * 265.23819 * 3 2 1 5 5 C 1.38218 * 120.00165 * 180.27710 * 4 3 2 6 6 C 1.38263 * 119.99662 * 359.73512 * 5 4 3 7 7 C 1.38213 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.99875 * 84.99754 * 3 2 1 9 9 C 1.50701 * 120.00219 * 0.02562 * 8 3 2 10 10 C 1.50703 * 109.47180 * 84.72025 * 9 8 3 11 11 O 1.21286 * 119.99788 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99833 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99967 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.52609 * 325.08107 * 13 12 10 15 15 C 1.53040 * 109.49758 * 205.00027 * 13 12 10 16 16 C 1.53044 * 109.53661 * 178.68364 * 15 13 12 17 17 C 1.53194 * 109.31373 * 61.36456 * 16 15 13 18 18 H 1.09003 * 109.58378 * 65.15197 * 17 16 15 19 19 C 1.52998 * 109.58433 * 185.57617 * 17 16 15 20 20 N 1.46922 * 108.77397 * 305.36305 * 17 16 15 21 21 C 1.36936 * 120.63100 * 233.58742 * 20 17 16 22 22 H 1.07993 * 120.00038 * 29.03060 * 21 20 17 23 23 C 1.38812 * 119.99785 * 209.03584 * 21 20 17 24 24 N 1.31617 * 120.00378 * 15.01823 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 195.01873 * 23 21 20 26 26 H 1.48494 * 109.47225 * 90.00113 * 25 23 21 27 27 H 1.48501 * 109.46797 * 209.99979 * 25 23 21 28 28 H 1.48497 * 109.47032 * 329.99739 * 25 23 21 29 29 C 1.46931 * 118.73776 * 53.61311 * 20 17 16 30 30 H 1.09003 * 109.46806 * 299.99664 * 1 2 3 31 31 H 1.08994 * 109.47038 * 59.99790 * 1 2 3 32 32 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47166 * 240.00017 * 2 1 3 34 34 H 1.09001 * 109.47364 * 120.00466 * 2 1 3 35 35 H 1.08000 * 120.00434 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00248 * 179.72523 * 5 4 3 37 37 H 1.07995 * 119.99514 * 179.97438 * 6 5 4 38 38 H 1.07995 * 120.00249 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.46740 * 324.72220 * 9 8 3 40 40 H 1.09001 * 109.47189 * 204.72203 * 9 8 3 41 41 H 0.97007 * 120.00278 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.46273 * 58.66293 * 15 13 12 43 43 H 1.09003 * 109.45883 * 298.70088 * 15 13 12 44 44 H 1.09003 * 109.49323 * 181.31636 * 16 15 13 45 45 H 1.09000 * 109.49895 * 301.41088 * 16 15 13 46 46 H 1.09002 * 109.47321 * 60.00447 * 19 17 16 47 47 H 1.09005 * 109.46837 * 179.97438 * 19 17 16 48 48 H 1.09001 * 109.47185 * 299.99946 * 19 17 16 49 49 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58018 * 186.60383 * 29 20 17 51 51 H 1.08993 * 109.70630 * 66.24601 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3566 2.0393 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9597 4.0253 0.0006 7 6 2.6310 3.4085 1.1930 8 6 2.1643 2.1070 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9838 0.6322 2.9840 11 8 4.0124 0.6093 2.3418 12 7 2.8936 -0.0598 4.1369 13 6 4.0382 -0.8392 4.6149 14 1 4.5727 -1.2611 3.7637 15 6 3.5440 -1.9705 5.5193 16 6 4.7362 -2.8052 5.9928 17 6 5.6859 -1.9178 6.8036 18 1 5.1880 -1.5869 7.7150 19 6 6.9459 -2.7083 7.1620 20 7 6.0518 -0.7501 5.9904 21 6 7.3667 -0.4323 5.7779 22 1 8.1162 -1.2098 5.7728 23 6 7.7362 0.8894 5.5690 24 7 6.8985 1.8612 5.8623 25 14 9.4226 1.2885 4.8714 26 1 9.3467 1.3354 3.3892 27 1 9.8716 2.6071 5.3860 28 1 10.3899 0.2404 5.2847 29 6 4.9800 0.0705 5.4101 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2502 1.5043 -2.1253 36 1 3.0802 3.8223 -2.1244 37 1 3.3244 5.0418 0.0010 38 1 2.7383 3.9432 2.1251 39 1 0.9551 0.7719 2.3366 40 1 1.5473 2.1906 3.2337 41 1 2.0710 -0.0412 4.6507 42 1 2.8544 -2.6053 4.9630 43 1 3.0312 -1.5472 6.3831 44 1 4.3813 -3.6246 6.6179 45 1 5.2641 -3.2086 5.1286 46 1 7.4441 -3.0319 6.2481 47 1 7.6204 -2.0751 7.7384 48 1 6.6710 -3.5810 7.7546 49 1 7.1567 2.7847 5.7160 50 1 5.4120 0.8191 4.7460 51 1 4.4240 0.5654 6.2062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071608264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:55 Heat of formation + Delta-G solvation = -28.368972 kcal Electronic energy + Delta-G solvation = -29274.707849 eV Core-core repulsion = 25558.739001 eV Total energy + Delta-G solvation = -3715.968848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.31382 -40.15518 -39.04796 -35.95139 -35.20259 -34.65584 -33.59287 -32.15166 -31.70883 -30.37487 -28.75867 -27.57474 -26.53008 -24.71391 -24.03830 -23.18224 -22.27204 -21.61691 -21.22856 -20.71243 -18.35263 -18.05574 -17.50988 -17.22921 -16.98783 -16.57960 -15.95982 -15.84059 -15.48333 -15.39207 -15.03607 -14.89531 -14.63411 -14.47593 -14.30905 -14.16986 -13.94963 -13.85663 -13.48434 -13.13046 -13.00840 -12.84118 -12.75554 -12.70455 -12.64186 -12.56982 -12.27994 -12.15735 -12.10404 -11.97206 -11.69100 -11.66016 -11.56057 -11.39572 -11.13911 -10.80480 -10.55202 -10.01396 -9.69235 -9.47115 -8.63122 -7.86138 -5.32121 0.42776 0.50859 1.37801 1.43307 1.48364 1.75544 2.28560 2.49372 2.91081 3.30440 3.66475 3.69209 3.85770 3.94944 4.00469 4.09367 4.10542 4.14935 4.29139 4.29689 4.33907 4.40762 4.50626 4.52924 4.62819 4.64304 4.71173 4.73441 4.76091 4.82018 4.89883 5.00469 5.03472 5.07310 5.09245 5.17288 5.19140 5.23109 5.31888 5.36659 5.41771 5.53029 5.54754 5.59074 5.61711 5.61987 5.69571 5.75035 5.83292 6.14835 6.40652 6.71368 7.15460 7.43776 7.90025 8.38392 9.18574 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003817 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.134282 B = 7333.874431 C = 8987.584165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.078 4.078 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.139 4.139 7 C -0.126 4.126 8 C -0.079 4.079 9 C -0.096 4.096 10 C 0.507 3.493 11 O -0.581 6.581 12 N -0.711 5.711 13 C 0.133 3.867 14 H 0.046 0.954 15 C -0.107 4.107 16 C -0.118 4.118 17 C 0.153 3.847 18 H 0.022 0.978 19 C -0.130 4.130 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.074 0.926 23 C -0.052 4.052 24 N -0.933 5.933 25 Si 0.953 3.047 26 H -0.299 1.299 27 H -0.293 1.293 28 H -0.260 1.260 29 C 0.180 3.820 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.414 0.586 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.037 0.963 48 H 0.079 0.921 49 H 0.244 0.756 50 H 0.041 0.959 51 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.848 -4.487 -8.328 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.079 4.079 9 C -0.135 4.135 10 C 0.294 3.706 11 O -0.460 6.460 12 N -0.363 5.363 13 C 0.026 3.974 14 H 0.064 0.936 15 C -0.145 4.145 16 C -0.158 4.158 17 C 0.048 3.952 18 H 0.040 0.960 19 C -0.187 4.187 20 N -0.329 5.329 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.247 4.247 24 N -0.580 5.580 25 Si 0.782 3.218 26 H -0.227 1.227 27 H -0.219 1.219 28 H -0.184 1.184 29 C 0.053 3.947 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.250 0.750 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -17.069 -4.376 -8.755 19.676 hybrid contribution 1.162 1.071 -0.016 1.580 sum -15.906 -3.305 -8.771 18.463 Atomic orbital electron populations 1.21736 0.92560 1.02741 1.02633 1.20568 0.97674 0.91654 1.02486 1.19968 0.98551 0.96487 0.92763 1.21287 1.00140 0.95570 0.97942 1.21422 0.99210 0.95005 0.98678 1.21351 1.00706 1.00977 0.92640 1.21249 0.99049 0.95295 0.98845 1.19354 1.00392 0.94125 0.94034 1.20776 0.96546 1.00333 0.95832 1.21147 0.89581 0.79257 0.80573 1.90747 1.33359 1.63832 1.58097 1.45908 1.16902 1.49805 1.23693 1.21441 0.87001 0.92681 0.96241 0.93604 1.21642 0.98224 0.95738 0.98851 1.21956 0.95789 0.98009 1.00027 1.20807 0.95046 0.87266 0.92057 0.96000 1.21738 0.97251 0.99076 1.00647 1.44341 1.01858 1.29930 1.56728 1.19497 0.85667 0.91075 1.41839 0.90797 1.25754 1.00665 0.96240 1.02074 1.70150 1.37399 0.98392 1.52011 0.85462 0.81219 0.77473 0.77613 1.22661 1.21933 1.18447 1.20767 0.87995 0.92256 0.93679 0.91965 0.92022 0.90976 0.90823 0.92589 0.84326 0.83923 0.84755 0.86258 0.85015 0.86293 0.74963 0.89569 0.90785 0.88577 0.93140 0.93673 0.94379 0.90189 0.94726 0.94045 0.98517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.72 71.98 0.70 -1.42 16 2 C -0.09 -1.89 5.38 29.85 0.16 -1.73 16 3 C -0.08 -2.05 5.13 -19.87 -0.10 -2.15 16 4 C -0.13 -3.20 9.68 22.27 0.22 -2.99 16 5 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 6 C -0.14 -3.65 10.05 22.27 0.22 -3.42 16 7 C -0.13 -3.69 9.68 22.27 0.22 -3.48 16 8 C -0.08 -2.23 4.37 -19.86 -0.09 -2.32 16 9 C -0.10 -2.35 5.16 29.10 0.15 -2.20 16 10 C 0.51 17.70 6.97 87.66 0.61 18.31 16 11 O -0.58 -27.49 15.70 -3.05 -0.05 -27.53 16 12 N -0.71 -22.31 5.08 -442.17 -2.25 -24.56 16 13 C 0.13 5.18 2.60 45.07 0.12 5.29 16 14 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 15 C -0.11 -3.11 5.35 30.62 0.16 -2.95 16 16 C -0.12 -3.69 5.37 30.67 0.16 -3.52 16 17 C 0.15 6.14 3.50 44.98 0.16 6.30 16 18 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 19 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 20 N -0.60 -31.06 2.99 -675.23 -2.02 -33.08 16 21 C -0.25 -14.28 8.61 84.03 0.72 -13.56 16 22 H 0.07 4.07 6.20 -2.91 -0.02 4.05 16 23 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 24 N -0.93 -58.76 11.14 21.65 0.24 -58.52 16 25 Si 0.95 48.51 29.58 68.60 2.03 50.54 16 26 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 27 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 29 C 0.18 9.12 4.86 86.36 0.42 9.54 16 30 H 0.06 0.87 6.80 -2.39 -0.02 0.85 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.52 8.05 -2.38 -0.02 1.50 16 34 H 0.06 1.41 6.40 -2.39 -0.02 1.39 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.13 2.32 5.64 -2.39 -0.01 2.31 16 40 H 0.12 2.44 8.05 -2.39 -0.02 2.42 16 41 H 0.41 9.20 8.61 -92.70 -0.80 8.40 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.70 7.40 -2.39 -0.02 1.68 16 47 H 0.04 1.53 7.66 -2.38 -0.02 1.51 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.04 2.55 6.06 -2.39 -0.01 2.53 16 51 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -79.84 397.47 3.12 -76.72 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.11 Total: 26.32 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.05 Total: -9.90 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -4.02 Total: -116.15 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -79.84 3.12 -76.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.349 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds