Wall clock time and date at job start Tue Mar 31 2020 16:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46686 * 2 1 4 4 C 1.38256 * 119.99660 * 265.01891 * 3 2 1 5 5 C 1.38220 * 119.99851 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99697 * 359.95561 * 5 4 3 7 7 C 1.38209 * 120.00345 * 359.79644 * 6 5 4 8 8 C 1.38206 * 120.00104 * 85.00232 * 3 2 1 9 9 C 1.50703 * 119.99866 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.46782 * 85.00807 * 9 8 3 11 11 O 1.21280 * 120.00226 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00002 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.52129 * 324.91643 * 13 12 10 15 15 C 1.53070 * 109.38961 * 204.75069 * 13 12 10 16 16 C 1.53043 * 109.65786 * 301.27523 * 15 13 12 17 17 C 1.53189 * 109.31162 * 298.70338 * 16 15 13 18 18 H 1.09006 * 109.70387 * 294.77090 * 17 16 15 19 19 C 1.53004 * 109.58697 * 174.42265 * 17 16 15 20 20 N 1.46922 * 108.77937 * 54.63154 * 17 16 15 21 21 C 1.36939 * 120.63157 * 126.41346 * 20 17 16 22 22 H 1.08002 * 120.00067 * 330.85313 * 21 20 17 23 23 C 1.38808 * 120.00079 * 150.85127 * 21 20 17 24 24 N 1.31620 * 120.00110 * 160.75538 * 23 21 20 25 25 Si 1.86800 * 120.00080 * 340.75793 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.23934 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.24513 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.23737 * 25 23 21 29 29 C 1.46926 * 118.73985 * 306.39639 * 20 17 16 30 30 H 1.09008 * 109.46656 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47069 * 299.99653 * 1 2 3 32 32 H 1.08991 * 109.47278 * 60.00303 * 1 2 3 33 33 H 1.08995 * 109.47022 * 239.99849 * 2 1 3 34 34 H 1.08999 * 109.46995 * 119.99761 * 2 1 3 35 35 H 1.08001 * 119.99957 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99662 * 179.97438 * 5 4 3 37 37 H 1.08003 * 119.99912 * 180.02562 * 6 5 4 38 38 H 1.07997 * 120.00575 * 180.24867 * 7 6 5 39 39 H 1.08993 * 109.47362 * 325.00295 * 9 8 3 40 40 H 1.09005 * 109.46813 * 205.00007 * 9 8 3 41 41 H 0.97001 * 119.99686 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.34962 * 181.25088 * 15 13 12 43 43 H 1.09004 * 109.44694 * 61.35518 * 15 13 12 44 44 H 1.08996 * 109.49613 * 178.74542 * 16 15 13 45 45 H 1.09000 * 109.52177 * 58.66750 * 16 15 13 46 46 H 1.09001 * 109.46970 * 300.70680 * 19 17 16 47 47 H 1.08996 * 109.46820 * 60.70919 * 19 17 16 48 48 H 1.09004 * 109.46938 * 180.70998 * 19 17 16 49 49 H 0.97003 * 120.00221 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.59018 * 173.39292 * 29 20 17 51 51 H 1.09008 * 109.58282 * 293.67448 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1929 5 6 2.8218 3.3409 -1.1929 6 6 2.9538 4.0275 -0.0001 7 6 2.6207 3.4123 1.1919 8 6 2.1643 2.1072 1.1923 9 6 1.8054 1.4348 2.4925 10 6 2.9845 0.6376 2.9878 11 8 4.0145 0.6170 2.3479 12 7 2.8939 -0.0534 4.1414 13 6 4.0398 -0.8289 4.6227 14 1 4.5756 -1.2525 3.7731 15 6 3.5447 -1.9562 5.5322 16 6 2.7673 -1.3637 6.7098 17 6 3.6953 -0.4573 7.5247 18 1 4.4868 -1.0541 7.9781 19 6 2.8922 0.2465 8.6205 20 7 4.2864 0.5442 6.6269 21 6 4.1936 1.8799 6.9140 22 1 3.3510 2.2541 7.4766 23 6 5.1825 2.7530 6.4820 24 7 4.9356 4.0439 6.4111 25 14 6.8637 2.0959 6.0011 26 1 6.8874 1.8164 4.5429 27 1 7.9020 3.1058 6.3286 28 1 7.1382 0.8431 6.7498 29 6 4.9793 0.0854 5.4152 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2576 1.5015 -2.1246 36 1 3.0787 3.8228 -2.1246 37 1 3.3137 5.0458 -0.0001 38 1 2.7199 3.9499 2.1233 39 1 0.9569 0.7691 2.3351 40 1 1.5418 2.1911 3.2319 41 1 2.0699 -0.0372 4.6530 42 1 4.3994 -2.5190 5.9076 43 1 2.8932 -2.6207 4.9646 44 1 2.3971 -2.1695 7.3435 45 1 1.9265 -0.7803 6.3346 46 1 2.0983 0.8387 8.1656 47 1 2.4547 -0.4981 9.2854 48 1 3.5518 0.9004 9.1911 49 1 5.6265 4.6540 6.1089 50 1 5.2544 0.9448 4.8040 51 1 5.8768 -0.4667 5.6945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071608265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:59 Heat of formation + Delta-G solvation = -1.725944 kcal Electronic energy + Delta-G solvation = -29987.738716 eV Core-core repulsion = 26272.925196 eV Total energy + Delta-G solvation = -3714.813520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.08561 -39.05761 -37.59258 -34.27807 -34.14786 -32.72654 -32.41932 -30.77162 -30.68774 -29.39416 -27.50150 -26.21080 -24.82450 -23.79660 -22.72299 -22.09997 -21.01307 -20.39591 -19.93701 -18.89999 -16.92974 -16.55452 -16.18310 -15.90588 -15.58450 -15.12365 -14.85383 -14.49676 -14.23955 -13.80594 -13.68116 -13.56676 -13.49003 -13.33661 -13.08163 -12.86841 -12.79057 -12.54067 -12.07510 -11.99344 -11.86358 -11.70834 -11.60250 -11.49515 -11.27341 -11.22266 -10.96810 -10.69370 -10.56944 -10.52562 -10.41681 -10.29162 -9.94580 -9.68383 -9.37822 -9.34449 -8.68558 -8.57726 -8.38886 -8.35508 -6.87704 -5.91075 -3.27949 1.53026 1.61246 3.17729 3.44132 3.54056 3.55060 3.65989 4.06518 4.59565 4.77116 4.85889 4.89536 5.02346 5.11225 5.16561 5.22586 5.26199 5.30401 5.32918 5.36776 5.46855 5.49027 5.56105 5.63541 5.69971 5.77791 5.80089 5.87047 5.94817 5.99627 6.00136 6.10470 6.13444 6.22747 6.24841 6.26472 6.31467 6.32064 6.41645 6.48962 6.50773 6.65900 6.72035 6.75587 6.86011 6.95158 7.03187 7.09827 7.21489 8.00057 8.06861 8.37781 8.78804 8.97762 9.77684 10.14886 11.24297 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004500 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.017075 B = 6221.387308 C = 7486.954084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.068 4.068 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.055 4.055 9 C -0.107 4.107 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.704 5.704 13 C 0.129 3.871 14 H 0.078 0.922 15 C -0.119 4.119 16 C -0.131 4.131 17 C 0.169 3.831 18 H 0.029 0.971 19 C -0.136 4.136 20 N -0.598 5.598 21 C -0.257 4.257 22 H 0.090 0.910 23 C 0.029 3.971 24 N -0.908 5.908 25 Si 0.874 3.126 26 H -0.285 1.285 27 H -0.305 1.305 28 H -0.272 1.272 29 C 0.114 3.886 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.397 0.603 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.261 0.739 50 H 0.080 0.920 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -8.995 -9.637 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.068 4.068 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.118 4.118 8 C -0.055 4.055 9 C -0.147 4.147 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.356 5.356 13 C 0.023 3.977 14 H 0.096 0.904 15 C -0.157 4.157 16 C -0.170 4.170 17 C 0.063 3.937 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.322 5.322 21 C -0.385 4.385 22 H 0.107 0.893 23 C -0.170 4.170 24 N -0.551 5.551 25 Si 0.704 3.296 26 H -0.212 1.212 27 H -0.233 1.233 28 H -0.197 1.197 29 C -0.012 4.012 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.436 -8.841 -10.093 16.403 hybrid contribution 0.863 -0.100 -0.010 0.869 sum -8.573 -8.940 -10.104 15.985 Atomic orbital electron populations 1.21773 0.94899 1.01530 1.02176 1.20532 0.95763 0.93121 1.02921 1.19610 0.98940 0.95567 0.92658 1.20894 1.00873 0.95238 0.97101 1.21046 1.00303 0.94890 0.97847 1.21073 1.00577 1.00026 0.92530 1.21131 0.97535 0.94585 0.98508 1.19134 0.99400 0.93893 0.93067 1.20741 0.97593 1.00285 0.96086 1.20275 0.89183 0.79237 0.80837 1.90694 1.31034 1.62569 1.57433 1.45814 1.16603 1.49978 1.23162 1.21432 0.88212 0.91803 0.96250 0.90389 1.21695 1.00443 0.96740 0.96789 1.22055 0.98954 0.98992 0.97019 1.20475 0.93151 0.90065 0.90027 0.95375 1.21802 1.00196 0.99648 0.97675 1.44377 1.65188 1.02909 1.19728 1.18833 1.04895 0.80502 1.34274 0.89262 1.25262 0.97624 0.94942 0.99147 1.69800 1.33622 1.02184 1.49538 0.87070 0.86296 0.78001 0.78192 1.21231 1.23340 1.19727 1.21750 0.93030 0.97721 0.88715 0.92512 0.92419 0.92585 0.91287 0.91014 0.86573 0.86530 0.86259 0.85684 0.88439 0.87729 0.76778 0.91141 0.92449 0.92434 0.92191 0.92543 0.94226 0.91774 0.92923 0.90150 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.72 37.16 0.36 -1.02 16 2 C -0.09 -1.02 5.38 -27.88 -0.15 -1.17 16 3 C -0.07 -0.96 5.13 -104.62 -0.54 -1.49 16 4 C -0.12 -1.62 9.68 -39.58 -0.38 -2.00 16 5 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 6 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 7 C -0.10 -1.62 9.68 -39.58 -0.38 -2.00 16 8 C -0.05 -0.85 4.37 -104.62 -0.46 -1.31 16 9 C -0.11 -1.58 5.16 -29.03 -0.15 -1.73 16 10 C 0.52 9.46 6.99 -10.98 -0.08 9.39 16 11 O -0.54 -12.04 15.70 5.56 0.09 -11.95 16 12 N -0.70 -11.88 4.92 -53.68 -0.26 -12.15 16 13 C 0.13 2.30 2.82 -67.80 -0.19 2.11 16 14 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 15 C -0.12 -1.68 5.57 -26.67 -0.15 -1.83 16 16 C -0.13 -1.89 5.21 -26.61 -0.14 -2.03 16 17 C 0.17 3.08 3.50 -67.60 -0.24 2.84 16 18 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 19 C -0.14 -2.34 7.94 37.16 0.30 -2.05 16 20 N -0.60 -13.42 2.67 -164.78 -0.44 -13.86 16 21 C -0.26 -6.82 9.04 -15.06 -0.14 -6.96 16 22 H 0.09 2.49 6.40 -52.49 -0.34 2.15 16 23 C 0.03 0.84 5.24 -17.43 -0.09 0.75 16 24 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 25 Si 0.87 23.27 24.34 -169.99 -4.14 19.13 16 26 H -0.28 -7.79 6.62 56.52 0.37 -7.42 16 27 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 28 H -0.27 -7.05 6.63 56.52 0.37 -6.68 16 29 C 0.11 2.54 3.80 -3.71 -0.01 2.52 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.54 6.80 -51.93 -0.35 0.19 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.07 0.94 6.42 -51.93 -0.33 0.60 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.10 1.14 5.62 -51.93 -0.29 0.85 16 40 H 0.10 1.53 8.05 -51.93 -0.42 1.11 16 41 H 0.40 5.89 6.78 -40.82 -0.28 5.61 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.85 6.42 -51.93 -0.33 0.52 16 46 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 50 H 0.08 2.10 4.62 -51.93 -0.24 1.86 16 51 H 0.03 0.64 7.02 -51.92 -0.36 0.27 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -33.10 387.66 -9.75 -42.85 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.38 Total: 7.20 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.23 Total: -10.17 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.07 Total: -52.90 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.14 Total: 19.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.10 -9.75 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.126 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds