Wall clock time and date at job start Tue Mar 31 2020 16:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46686 * 2 1 4 4 C 1.38256 * 119.99660 * 265.01891 * 3 2 1 5 5 C 1.38220 * 119.99851 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99697 * 359.95561 * 5 4 3 7 7 C 1.38209 * 120.00345 * 359.79644 * 6 5 4 8 8 C 1.38206 * 120.00104 * 85.00232 * 3 2 1 9 9 C 1.50703 * 119.99866 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.46782 * 85.00807 * 9 8 3 11 11 O 1.21280 * 120.00226 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00002 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.52129 * 324.91643 * 13 12 10 15 15 C 1.53070 * 109.38961 * 204.75069 * 13 12 10 16 16 C 1.53043 * 109.65786 * 301.27523 * 15 13 12 17 17 C 1.53189 * 109.31162 * 298.70338 * 16 15 13 18 18 H 1.09006 * 109.70387 * 294.77090 * 17 16 15 19 19 C 1.53004 * 109.58697 * 174.42265 * 17 16 15 20 20 N 1.46922 * 108.77937 * 54.63154 * 17 16 15 21 21 C 1.36939 * 120.63157 * 126.41346 * 20 17 16 22 22 H 1.08002 * 120.00067 * 330.85313 * 21 20 17 23 23 C 1.38808 * 120.00079 * 150.85127 * 21 20 17 24 24 N 1.31620 * 120.00110 * 160.75538 * 23 21 20 25 25 Si 1.86800 * 120.00080 * 340.75793 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.23934 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.24513 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.23737 * 25 23 21 29 29 C 1.46926 * 118.73985 * 306.39639 * 20 17 16 30 30 H 1.09008 * 109.46656 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47069 * 299.99653 * 1 2 3 32 32 H 1.08991 * 109.47278 * 60.00303 * 1 2 3 33 33 H 1.08995 * 109.47022 * 239.99849 * 2 1 3 34 34 H 1.08999 * 109.46995 * 119.99761 * 2 1 3 35 35 H 1.08001 * 119.99957 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.99662 * 179.97438 * 5 4 3 37 37 H 1.08003 * 119.99912 * 180.02562 * 6 5 4 38 38 H 1.07997 * 120.00575 * 180.24867 * 7 6 5 39 39 H 1.08993 * 109.47362 * 325.00295 * 9 8 3 40 40 H 1.09005 * 109.46813 * 205.00007 * 9 8 3 41 41 H 0.97001 * 119.99686 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.34962 * 181.25088 * 15 13 12 43 43 H 1.09004 * 109.44694 * 61.35518 * 15 13 12 44 44 H 1.08996 * 109.49613 * 178.74542 * 16 15 13 45 45 H 1.09000 * 109.52177 * 58.66750 * 16 15 13 46 46 H 1.09001 * 109.46970 * 300.70680 * 19 17 16 47 47 H 1.08996 * 109.46820 * 60.70919 * 19 17 16 48 48 H 1.09004 * 109.46938 * 180.70998 * 19 17 16 49 49 H 0.97003 * 120.00221 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.59018 * 173.39292 * 29 20 17 51 51 H 1.09008 * 109.58282 * 293.67448 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1929 5 6 2.8218 3.3409 -1.1929 6 6 2.9538 4.0275 -0.0001 7 6 2.6207 3.4123 1.1919 8 6 2.1643 2.1072 1.1923 9 6 1.8054 1.4348 2.4925 10 6 2.9845 0.6376 2.9878 11 8 4.0145 0.6170 2.3479 12 7 2.8939 -0.0534 4.1414 13 6 4.0398 -0.8289 4.6227 14 1 4.5756 -1.2525 3.7731 15 6 3.5447 -1.9562 5.5322 16 6 2.7673 -1.3637 6.7098 17 6 3.6953 -0.4573 7.5247 18 1 4.4868 -1.0541 7.9781 19 6 2.8922 0.2465 8.6205 20 7 4.2864 0.5442 6.6269 21 6 4.1936 1.8799 6.9140 22 1 3.3510 2.2541 7.4766 23 6 5.1825 2.7530 6.4820 24 7 4.9356 4.0439 6.4111 25 14 6.8637 2.0959 6.0011 26 1 6.8874 1.8164 4.5429 27 1 7.9020 3.1058 6.3286 28 1 7.1382 0.8431 6.7498 29 6 4.9793 0.0854 5.4152 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2576 1.5015 -2.1246 36 1 3.0787 3.8228 -2.1246 37 1 3.3137 5.0458 -0.0001 38 1 2.7199 3.9499 2.1233 39 1 0.9569 0.7691 2.3351 40 1 1.5418 2.1911 3.2319 41 1 2.0699 -0.0372 4.6530 42 1 4.3994 -2.5190 5.9076 43 1 2.8932 -2.6207 4.9646 44 1 2.3971 -2.1695 7.3435 45 1 1.9265 -0.7803 6.3346 46 1 2.0983 0.8387 8.1656 47 1 2.4547 -0.4981 9.2854 48 1 3.5518 0.9004 9.1911 49 1 5.6265 4.6540 6.1089 50 1 5.2544 0.9448 4.8040 51 1 5.8768 -0.4667 5.6945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071608265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:58 Heat of formation + Delta-G solvation = -22.013632 kcal Electronic energy + Delta-G solvation = -29988.618456 eV Core-core repulsion = 26272.925196 eV Total energy + Delta-G solvation = -3715.693260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40339 -40.34141 -39.08385 -35.82644 -35.20407 -34.49914 -33.60547 -32.56409 -32.15323 -30.37577 -28.70752 -27.78981 -26.53063 -24.72990 -24.38756 -23.28241 -22.24147 -21.84449 -21.12442 -20.49867 -18.43643 -18.28033 -17.39173 -17.30836 -17.02049 -16.66153 -16.17013 -15.99111 -15.69938 -15.28645 -15.08712 -14.97604 -14.64401 -14.45980 -14.34299 -14.29267 -14.08489 -13.87608 -13.70313 -13.46834 -13.24130 -13.02300 -12.82868 -12.64104 -12.63324 -12.52979 -12.38565 -12.18399 -12.10682 -11.82389 -11.68777 -11.64984 -11.56013 -11.37162 -11.12779 -10.86811 -10.71768 -9.97220 -9.70372 -9.47906 -8.80187 -8.15487 -5.43489 0.42489 0.49606 1.25626 1.30230 1.36259 1.73921 2.35954 2.40382 2.91179 3.07113 3.32471 3.68000 3.85653 3.87167 3.97873 4.02505 4.09232 4.13641 4.15026 4.28530 4.31675 4.35023 4.51154 4.53478 4.54507 4.57837 4.62781 4.67518 4.73468 4.76316 4.80879 4.88172 4.99497 5.03684 5.04450 5.09649 5.11607 5.17579 5.21545 5.22631 5.29341 5.42777 5.53589 5.58508 5.61606 5.63286 5.67205 5.75384 5.93483 6.14227 6.20159 6.69035 6.96195 7.39258 7.68351 8.09396 9.03666 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004500 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.017075 B = 6221.387308 C = 7486.954084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.075 4.075 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.075 4.075 9 C -0.099 4.099 10 C 0.514 3.486 11 O -0.586 6.586 12 N -0.696 5.696 13 C 0.134 3.866 14 H 0.072 0.928 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.157 3.843 18 H 0.034 0.966 19 C -0.130 4.130 20 N -0.607 5.607 21 C -0.216 4.216 22 H 0.075 0.925 23 C -0.029 4.029 24 N -0.953 5.953 25 Si 0.922 3.078 26 H -0.305 1.305 27 H -0.316 1.316 28 H -0.259 1.259 29 C 0.112 3.888 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.409 0.591 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.080 0.920 48 H 0.034 0.966 49 H 0.254 0.746 50 H 0.035 0.965 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 -12.540 -10.293 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.075 4.075 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.076 4.076 9 C -0.138 4.138 10 C 0.301 3.699 11 O -0.466 6.466 12 N -0.348 5.348 13 C 0.027 3.973 14 H 0.090 0.910 15 C -0.147 4.147 16 C -0.160 4.160 17 C 0.053 3.947 18 H 0.052 0.948 19 C -0.187 4.187 20 N -0.332 5.332 21 C -0.346 4.346 22 H 0.092 0.908 23 C -0.223 4.223 24 N -0.601 5.601 25 Si 0.755 3.245 26 H -0.234 1.234 27 H -0.245 1.245 28 H -0.184 1.184 29 C -0.014 4.014 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.246 0.754 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.627 -12.457 -10.708 20.125 hybrid contribution 1.498 0.943 0.206 1.782 sum -10.130 -11.514 -10.502 18.587 Atomic orbital electron populations 1.21744 0.92856 1.02794 1.02435 1.20567 0.97439 0.91369 1.02774 1.19964 0.98456 0.96716 0.92381 1.21314 0.99804 0.95397 0.97965 1.21419 0.99205 0.95044 0.98346 1.21309 1.00778 1.00874 0.92633 1.21199 0.99595 0.95574 0.98546 1.19306 1.00319 0.93856 0.94113 1.20728 0.97178 1.00193 0.95701 1.20879 0.89415 0.78852 0.80747 1.90665 1.32951 1.64131 1.58861 1.45792 1.16798 1.49398 1.22790 1.21325 0.87788 0.91984 0.96188 0.90962 1.21688 1.01428 0.95446 0.96119 1.21967 0.97834 0.99200 0.96971 1.20851 0.94014 0.89648 0.90210 0.94824 1.21745 0.99202 1.00113 0.97690 1.44537 1.65347 1.02315 1.20993 1.18857 1.02892 0.82371 1.30516 0.90755 1.25720 1.00026 0.95202 1.01353 1.69896 1.33998 1.03141 1.53020 0.86290 0.84070 0.77503 0.76681 1.23395 1.24520 1.18362 1.21666 0.94322 0.96890 0.88569 0.90704 0.92548 0.91980 0.90182 0.92393 0.83688 0.83552 0.85134 0.87854 0.85015 0.88203 0.75372 0.90143 0.88979 0.88509 0.91828 0.93563 0.90100 0.94727 0.93699 0.94688 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.72 71.98 0.70 -1.55 16 2 C -0.08 -1.82 5.38 29.85 0.16 -1.66 16 3 C -0.08 -2.05 5.13 -19.87 -0.10 -2.16 16 4 C -0.13 -3.13 9.68 22.27 0.22 -2.91 16 5 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 6 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 7 C -0.13 -4.51 9.68 22.27 0.22 -4.30 16 8 C -0.08 -2.41 4.37 -19.86 -0.09 -2.50 16 9 C -0.10 -2.93 5.16 29.10 0.15 -2.78 16 10 C 0.51 18.87 6.99 87.66 0.61 19.49 16 11 O -0.59 -26.90 15.70 -3.03 -0.05 -26.95 16 12 N -0.70 -22.69 4.92 -442.12 -2.17 -24.86 16 13 C 0.13 4.55 2.82 45.08 0.13 4.68 16 14 H 0.07 2.57 7.58 -2.38 -0.02 2.56 16 15 C -0.11 -2.61 5.57 30.63 0.17 -2.44 16 16 C -0.12 -2.91 5.21 30.67 0.16 -2.75 16 17 C 0.16 5.28 3.50 44.98 0.16 5.44 16 18 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 19 C -0.13 -4.18 7.94 71.98 0.57 -3.61 16 20 N -0.61 -26.86 2.67 -675.23 -1.80 -28.66 16 21 C -0.22 -11.70 9.04 84.03 0.76 -10.94 16 22 H 0.07 4.24 6.40 -2.91 -0.02 4.22 16 23 C -0.03 -1.71 5.24 84.86 0.44 -1.27 16 24 N -0.95 -60.97 13.97 21.65 0.30 -60.67 16 25 Si 0.92 50.47 24.34 68.60 1.67 52.14 16 26 H -0.31 -17.50 6.62 99.48 0.66 -16.85 16 27 H -0.32 -17.59 7.11 99.48 0.71 -16.88 16 28 H -0.26 -13.34 6.63 99.48 0.66 -12.69 16 29 C 0.11 4.96 3.80 86.36 0.33 5.28 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.91 6.80 -2.39 -0.02 0.89 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 34 H 0.06 1.42 6.42 -2.39 -0.02 1.40 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.13 2.87 5.62 -2.39 -0.01 2.86 16 40 H 0.10 3.02 8.05 -2.38 -0.02 3.00 16 41 H 0.41 11.22 6.78 -92.71 -0.63 10.59 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.52 6.42 -2.39 -0.02 1.50 16 46 H 0.05 1.56 7.45 -2.39 -0.02 1.55 16 47 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.03 1.29 7.62 -2.38 -0.02 1.27 16 49 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 50 H 0.03 1.88 4.62 -2.39 -0.01 1.87 16 51 H 0.03 1.17 7.02 -2.38 -0.02 1.16 16 Total: -1.00 -77.18 387.66 3.18 -74.01 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.20 Total: 25.65 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.03 Total: -10.67 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.68 Total: -114.19 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.67 Total: 52.14 kcal Total: -77.18 3.18 -74.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.995 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds