Wall clock time and date at job start Tue Mar 31 2020 16:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47617 * 2 1 4 4 C 1.38257 * 119.99966 * 264.99813 * 3 2 1 5 5 C 1.38212 * 120.00115 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99943 * 359.96125 * 5 4 3 7 7 C 1.38208 * 119.99672 * 0.27349 * 6 5 4 8 8 C 1.38210 * 120.00119 * 85.02011 * 3 2 1 9 9 C 1.50701 * 119.99918 * 0.02562 * 8 3 2 10 10 C 1.50703 * 109.46597 * 85.00311 * 9 8 3 11 11 O 1.21277 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00109 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.49605 * 34.93455 * 13 12 10 15 15 C 1.53043 * 109.49639 * 154.99814 * 13 12 10 16 16 C 1.53046 * 109.53771 * 181.31725 * 15 13 12 17 17 C 1.53192 * 109.31202 * 298.63842 * 16 15 13 18 18 H 1.08999 * 109.58242 * 294.70086 * 17 16 15 19 19 C 1.52994 * 109.58800 * 174.42242 * 17 16 15 20 20 N 1.46926 * 108.77770 * 54.63201 * 17 16 15 21 21 C 1.36938 * 120.63082 * 126.41057 * 20 17 16 22 22 H 1.07996 * 119.99830 * 330.85886 * 21 20 17 23 23 C 1.38811 * 119.99982 * 150.85369 * 21 20 17 24 24 N 1.31608 * 120.00126 * 160.75138 * 23 21 20 25 25 Si 1.86800 * 119.99930 * 340.75180 * 23 21 20 26 26 H 1.48499 * 109.47186 * 92.27896 * 25 23 21 27 27 H 1.48498 * 109.47181 * 212.27868 * 25 23 21 28 28 H 1.48502 * 109.47484 * 332.28103 * 25 23 21 29 29 C 1.46923 * 118.73907 * 306.39379 * 20 17 16 30 30 H 1.09004 * 109.47161 * 300.00467 * 1 2 3 31 31 H 1.09005 * 109.46894 * 59.99959 * 1 2 3 32 32 H 1.09001 * 109.47615 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47161 * 239.99533 * 2 1 3 34 34 H 1.09005 * 109.46894 * 120.00041 * 2 1 3 35 35 H 1.07999 * 120.00383 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00255 * 179.97438 * 5 4 3 37 37 H 1.08005 * 119.99872 * 180.02562 * 6 5 4 38 38 H 1.08007 * 119.99700 * 179.72895 * 7 6 5 39 39 H 1.09002 * 109.46992 * 204.99938 * 9 8 3 40 40 H 1.09000 * 109.47411 * 325.00430 * 9 8 3 41 41 H 0.97002 * 119.99733 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.45915 * 301.33562 * 15 13 12 43 43 H 1.09000 * 109.45992 * 61.30987 * 15 13 12 44 44 H 1.08999 * 109.49504 * 58.58891 * 16 15 13 45 45 H 1.09001 * 109.49564 * 178.64962 * 16 15 13 46 46 H 1.09004 * 109.47451 * 59.99439 * 19 17 16 47 47 H 1.08992 * 109.47432 * 179.97438 * 19 17 16 48 48 H 1.09000 * 109.46912 * 299.99820 * 19 17 16 49 49 H 0.97002 * 120.00263 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58820 * 293.82026 * 29 20 17 51 51 H 1.09001 * 109.59063 * 173.39355 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3613 2.0376 -1.1928 5 6 2.8226 3.3405 -1.1928 6 6 2.9544 4.0272 0.0000 7 6 2.6302 3.4088 1.1928 8 6 2.1648 2.1069 1.1924 9 6 1.8074 1.4341 2.4926 10 6 2.9872 0.6374 2.9869 11 8 4.0168 0.6175 2.3461 12 7 2.8980 -0.0539 4.1404 13 6 4.0447 -0.8289 4.6207 14 1 4.9680 -0.3098 4.3634 15 6 3.9540 -0.9871 6.1402 16 6 5.1686 -1.7683 6.6468 17 6 5.1730 -3.1638 6.0148 18 1 4.3072 -3.7261 6.3647 19 6 6.4554 -3.9003 6.4067 20 7 5.1137 -3.0214 4.5536 21 6 6.0446 -3.6302 3.7549 22 1 7.0428 -3.8070 4.1274 23 6 5.7053 -4.0201 2.4667 24 7 6.6489 -4.2472 1.5778 25 14 3.9093 -4.2224 1.9946 26 1 3.4008 -2.9490 1.4245 27 1 3.7818 -5.3030 0.9840 28 1 3.1174 -4.5761 3.2001 29 6 4.0364 -2.2137 3.9657 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2578 1.5015 -2.1246 36 1 3.0799 3.8223 -2.1245 37 1 3.3145 5.0454 0.0000 38 1 2.7374 3.9437 2.1249 39 1 1.5438 2.1900 3.2324 40 1 0.9591 0.7678 2.3358 41 1 2.0744 -0.0382 4.6527 42 1 3.9350 -0.0024 6.6073 43 1 3.0425 -1.5276 6.3952 44 1 6.0815 -1.2409 6.3705 45 1 5.1155 -1.8599 7.7317 46 1 6.5037 -3.9938 7.4917 47 1 6.4564 -4.8929 5.9565 48 1 7.3197 -3.3391 6.0516 49 1 6.4118 -4.5200 0.6776 50 1 3.0765 -2.6976 4.1465 51 1 4.2001 -2.1114 2.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071608266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:02 Heat of formation + Delta-G solvation = -2.748359 kcal Electronic energy + Delta-G solvation = -29605.109268 eV Core-core repulsion = 25890.251413 eV Total energy + Delta-G solvation = -3714.857855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.22550 -39.05216 -37.73442 -34.54331 -34.28079 -32.81210 -32.58768 -30.81601 -30.65376 -29.49794 -27.72911 -25.98162 -24.78594 -23.84139 -22.77716 -22.13288 -21.02696 -20.48674 -20.01595 -19.25136 -16.93515 -16.59156 -16.42419 -16.04104 -15.87863 -15.15875 -14.82833 -14.60419 -14.31142 -13.90150 -13.77041 -13.67002 -13.48467 -13.38762 -13.16702 -12.99824 -12.90479 -12.45016 -12.12707 -12.11058 -11.93498 -11.78059 -11.68877 -11.41793 -11.28822 -11.24621 -10.79778 -10.76212 -10.69958 -10.67340 -10.34995 -10.25379 -9.99499 -9.64545 -9.59093 -9.35460 -8.80248 -8.74104 -8.52502 -8.45694 -6.88452 -5.87668 -3.25526 1.37503 1.45852 2.93368 3.37354 3.41062 3.50143 3.53223 3.87770 4.60089 4.61668 4.75262 4.89869 4.94147 4.96330 5.08764 5.13687 5.20708 5.24821 5.25645 5.32109 5.36714 5.47675 5.49943 5.53119 5.58073 5.64541 5.77065 5.87676 5.93521 5.94500 6.01845 6.03857 6.12434 6.14131 6.24947 6.27023 6.28458 6.35913 6.49206 6.50788 6.53855 6.55576 6.64654 6.69215 6.71583 6.89833 7.01595 7.05582 7.10994 7.78708 8.04066 8.42282 8.55687 9.00250 9.79727 10.15706 11.27973 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.004079 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.927320 B = 6863.084087 C = 7839.464032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.059 4.059 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.127 4.127 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.107 4.107 10 C 0.507 3.493 11 O -0.516 6.516 12 N -0.729 5.729 13 C 0.126 3.874 14 H 0.090 0.910 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.169 3.831 18 H 0.029 0.971 19 C -0.137 4.137 20 N -0.598 5.598 21 C -0.261 4.261 22 H 0.092 0.908 23 C 0.029 3.971 24 N -0.906 5.906 25 Si 0.879 3.121 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.273 1.273 29 C 0.122 3.878 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.393 0.607 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.022 0.978 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 13.814 3.401 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.059 4.059 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.145 4.145 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.147 4.147 10 C 0.292 3.708 11 O -0.391 6.391 12 N -0.381 5.381 13 C 0.021 3.979 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.063 3.937 18 H 0.047 0.953 19 C -0.194 4.194 20 N -0.322 5.322 21 C -0.389 4.389 22 H 0.110 0.890 23 C -0.170 4.170 24 N -0.549 5.549 25 Si 0.710 3.290 26 H -0.214 1.214 27 H -0.233 1.233 28 H -0.198 1.198 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.226 0.774 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.040 0.960 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.968 13.709 2.762 19.071 hybrid contribution -1.366 -0.095 -0.195 1.383 sum -14.334 13.614 2.567 19.934 Atomic orbital electron populations 1.21759 0.94740 1.01811 1.01892 1.20614 0.95849 0.92914 1.03750 1.19678 0.97996 0.95529 0.92680 1.20988 1.00062 0.95162 0.97404 1.21080 0.99797 0.94810 0.97990 1.21023 1.01018 0.99884 0.92576 1.20925 0.98841 0.94470 0.98057 1.19101 1.00020 0.93968 0.93086 1.20768 0.97925 1.00027 0.95958 1.20454 0.89510 0.79822 0.81048 1.90802 1.30815 1.62180 1.55268 1.46156 1.17113 1.50459 1.24378 1.21740 0.89035 0.93660 0.93500 0.89187 1.21683 0.99396 0.99815 0.94531 1.22052 0.97658 0.98145 0.98890 1.20497 0.96388 0.92489 0.84323 0.95324 1.21811 0.97859 1.01558 0.98221 1.44371 1.31787 1.55175 1.00888 1.18901 0.92119 1.33115 0.94796 0.89042 1.25289 0.96727 0.98627 0.96400 1.69809 1.31860 1.49538 1.03661 0.86980 0.87855 0.76627 0.77565 1.21419 1.23291 1.19804 1.21675 0.91322 0.88865 0.98624 0.92625 0.92517 0.92271 0.90815 0.90799 0.86222 0.86310 0.86305 0.86367 0.88323 0.88023 0.77383 0.92500 0.92195 0.91630 0.92237 0.94120 0.91749 0.92330 0.92846 0.96046 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.72 37.16 0.36 -1.19 16 2 C -0.09 -1.33 5.38 -27.89 -0.15 -1.48 16 3 C -0.06 -0.84 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.56 9.68 -39.58 -0.38 -1.95 16 5 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 6 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 7 C -0.10 -1.34 9.68 -39.59 -0.38 -1.72 16 8 C -0.06 -0.85 4.37 -104.62 -0.46 -1.31 16 9 C -0.11 -1.29 5.16 -29.03 -0.15 -1.44 16 10 C 0.51 8.38 7.00 -10.98 -0.08 8.30 16 11 O -0.52 -11.38 15.70 5.56 0.09 -11.29 16 12 N -0.73 -10.88 5.08 -53.69 -0.27 -11.15 16 13 C 0.13 2.31 2.60 -67.81 -0.18 2.13 16 14 H 0.09 1.93 7.58 -51.93 -0.39 1.54 16 15 C -0.12 -1.71 5.35 -26.69 -0.14 -1.85 16 16 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 17 C 0.17 3.28 3.50 -67.60 -0.24 3.04 16 18 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 19 C -0.14 -2.52 7.94 37.15 0.30 -2.23 16 20 N -0.60 -14.34 2.75 -164.78 -0.45 -14.79 16 21 C -0.26 -7.38 9.05 -15.06 -0.14 -7.52 16 22 H 0.09 2.71 6.39 -52.49 -0.34 2.37 16 23 C 0.03 0.86 5.24 -17.44 -0.09 0.77 16 24 N -0.91 -28.72 13.97 55.49 0.78 -27.95 16 25 Si 0.88 23.34 24.34 -169.99 -4.14 19.20 16 26 H -0.29 -7.58 6.63 56.52 0.37 -7.21 16 27 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 28 H -0.27 -7.02 6.63 56.52 0.37 -6.64 16 29 C 0.12 2.75 3.77 -3.71 -0.01 2.74 16 30 H 0.05 0.53 6.80 -51.93 -0.35 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.07 1.22 6.42 -51.93 -0.33 0.89 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 39 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.10 1.06 5.63 -51.93 -0.29 0.77 16 41 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 1.29 7.66 -51.93 -0.40 0.89 16 48 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 49 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 50 H 0.02 0.48 7.03 -51.93 -0.37 0.11 16 51 H 0.08 2.08 4.62 -51.93 -0.24 1.84 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -35.33 391.17 -9.87 -45.20 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.54 Total: 5.89 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.22 Total: -11.00 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.05 Total: -53.89 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.33 -9.87 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.450 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds